1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33
|
# -*-Perl-*- Test Harness script for Bioperl
# $Id: TreeIO.t 14580 2008-03-01 17:01:30Z cjfields $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 7);
use_ok('Bio::TreeIO');
}
my $verbose = test_debug();
my $treeio = Bio::TreeIO->new(-verbose => $verbose,
-file => test_input_file('test.nhx'));
my $tree;
ok($treeio);
$tree = $treeio->next_tree;
isa_ok($tree, 'Bio::Tree::TreeI');
my @nodes = $tree->get_nodes;
is(@nodes, 13, "Total Nodes");
my $adhy = $tree->find_node('ADHY');
is($adhy->branch_length, 0.1);
is(($adhy->get_tag_values('S'))[0], 'nematode');
is(($adhy->get_tag_values('E'))[0], '1.1.1.1');
|