File: nhx.t

package info (click to toggle)
bioperl 1.6.1-2
  • links: PTS, VCS
  • area: main
  • in suites: squeeze
  • size: 40,768 kB
  • ctags: 12,005
  • sloc: perl: 174,299; xml: 13,923; sh: 1,941; lisp: 1,803; asm: 109; makefile: 53
file content (33 lines) | stat: -rw-r--r-- 672 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
# -*-Perl-*- Test Harness script for Bioperl
# $Id: TreeIO.t 14580 2008-03-01 17:01:30Z cjfields $

use strict;

BEGIN {
    use lib '.';
    use Bio::Root::Test;
    
    test_begin(-tests => 7);
    use_ok('Bio::TreeIO');
}

my $verbose = test_debug();

my $treeio = Bio::TreeIO->new(-verbose => $verbose,
			  -file   => test_input_file('test.nhx'));
my $tree;



ok($treeio);
$tree = $treeio->next_tree;

isa_ok($tree, 'Bio::Tree::TreeI');

my @nodes = $tree->get_nodes;
is(@nodes, 13, "Total Nodes");

my $adhy = $tree->find_node('ADHY');
is($adhy->branch_length, 0.1);
is(($adhy->get_tag_values('S'))[0], 'nematode');
is(($adhy->get_tag_values('E'))[0], '1.1.1.1');