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TBLASTX 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= HUMBETGLOA Human haplotype C4 beta-globin gene, complete cds.
(3002 letters)
Database: ecoli.nt
400 sequences; 4,662,239 total letters
Searching.................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AE000479.1|AE000479 Escherichia coli K-12 MG1655 section 369 ... 34 0.13
gb|AE000302.1|AE000302 Escherichia coli K-12 MG1655 section 192 ... 31 0.61
gb|AE000277.1|AE000277 Escherichia coli K-12 MG1655 section 167 ... 31 0.84
gb|AE000168.1|AE000168 Escherichia coli K-12 MG1655 section 58 o... 29 2.2
gb|AE000400.1|AE000400 Escherichia coli K-12 MG1655 section 290 ... 29 3.0
gb|AE000408.1|AE000408 Escherichia coli K-12 MG1655 section 298 ... 29 3.0
gb|AE000438.1|AE000438 Escherichia coli K-12 MG1655 section 328 ... 29 3.0
gb|AE000396.1|AE000396 Escherichia coli K-12 MG1655 section 286 ... 29 3.0
gb|AE000466.1|AE000466 Escherichia coli K-12 MG1655 section 356 ... 26 3.4
gb|AE000482.1|AE000482 Escherichia coli K-12 MG1655 section 372 ... 29 4.1
gb|AE000341.1|AE000341 Escherichia coli K-12 MG1655 section 231 ... 29 4.1
gb|AE000198.1|AE000198 Escherichia coli K-12 MG1655 section 88 o... 29 4.1
gb|AE000367.1|AE000367 Escherichia coli K-12 MG1655 section 257 ... 29 4.1
gb|AE000136.1|AE000136 Escherichia coli K-12 MG1655 section 26 o... 29 4.1
gb|AE000327.1|AE000327 Escherichia coli K-12 MG1655 section 217 ... 28 5.7
gb|AE000498.1|AE000498 Escherichia coli K-12 MG1655 section 388 ... 28 7.8
gb|AE000509.1|AE000509 Escherichia coli K-12 MG1655 section 399 ... 28 7.8
gb|AE000306.1|AE000306 Escherichia coli K-12 MG1655 section 196 ... 28 7.8
gb|AE000203.1|AE000203 Escherichia coli K-12 MG1655 section 93 o... 28 7.8
gb|AE000208.1|AE000208 Escherichia coli K-12 MG1655 section 98 o... 28 7.8
>gb|AE000479.1|AE000479 Escherichia coli K-12 MG1655 section 369 of 400 of the complete
genome
Length = 10934
Score = 33.6 bits (67), Expect = 0.13
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1 / -2
Query: 1057 SAYWSIFPPLGCWWSTLGPRGSLSPL 1134
+A W++FPP+G W L + SPL
Sbjct: 5893 AAVWALFPPVGSQWGCLASQWRTSPL 5816
>gb|AE000302.1|AE000302 Escherichia coli K-12 MG1655 section 192 of 400 of the complete
genome
Length = 10264
Score = 31.3 bits (62), Expect = 0.61
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2 / +2
Query: 2177 WSVCWPITLAKNSPHQC 2227
+ CWP+ L ++SP+QC
Sbjct: 1157 YPACWPLPLRRSSPYQC 1207
>gb|AE000277.1|AE000277 Escherichia coli K-12 MG1655 section 167 of 400 of the complete
genome
Length = 11653
Score = 30.8 bits (61), Expect = 0.84
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2 / -3
Query: 2174 CWSVCWPITLAKNSPHQCRLPIRKW 2248
CW + L K+ P QCR+ + +W
Sbjct: 4931 CWLTASVLRLQKSLPRQCRITVVRW 4857
>gb|AE000168.1|AE000168 Escherichia coli K-12 MG1655 section 58 of 400 of the complete genome
Length = 12663
Score = 29.5 bits (58), Expect = 2.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -1 / +1
Query: 2813 KEHFRGKVVSLSKRTEWSQG*EMQDKQMGSEKTFMRTAKTI 2691
K H RG+ V + ++ ++ E+ D++ G+ + RT +TI
Sbjct: 13 KRHLRGE*VKVGEKYITARRGELPDQEPGNGEASYRTMRTI 135
>gb|AE000400.1|AE000400 Escherichia coli K-12 MG1655 section 290 of 400 of the complete
genome
Length = 14295
Score = 29.0 bits (57), Expect = 3.0
Identities = 7/18 (38%), Positives = 10/18 (54%)
Frame = +2 / +3
Query: 2165 WATCWSVCWPITLAKNSP 2218
W TCW+ CW ++P
Sbjct: 9096 WITCWNCCWQAGWISSAP 9149
>gb|AE000408.1|AE000408 Escherichia coli K-12 MG1655 section 298 of 400 of the complete
genome
Length = 10944
Score = 29.0 bits (57), Expect = 3.0
Identities = 17/39 (43%), Positives = 20/39 (50%)
Frame = -3 / +1
Query: 1020 LSPHAQFLLVSLNLSCNLDTNLPRASPPTSSTFTLPHRA 904
L+ A FLLV + +S DT LPR T TF RA
Sbjct: 7618 LTSTAAFLLV*VKISRACDTFLPRIRSATRRTF*AEERA 7734
>gb|AE000438.1|AE000438 Escherichia coli K-12 MG1655 section 328 of 400 of the complete
genome
Length = 10426
Score = 29.0 bits (57), Expect = 3.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2 / +3
Query: 2165 WATCWSVCWPITLAKNSPHQCRLPIRKW 2248
WA CW C + +A NS R W
Sbjct: 750 WACCWRTCSLVVVALNSLRAVRQSSTSW 833
>gb|AE000396.1|AE000396 Escherichia coli K-12 MG1655 section 286 of 400 of the complete
genome
Length = 10098
Score = 29.0 bits (57), Expect = 3.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3 / -1
Query: 633 PPSKIYLLAPYHQYKLLLKTSSFASVF 553
PP++ YLL+P H+++++ S + F
Sbjct: 309 PPARFYLLSPVHEWRVIAS*SWYHQSF 229
>gb|AE000466.1|AE000466 Escherichia coli K-12 MG1655 section 356 of 400 of the complete
genome
Length = 10208
Score = 26.3 bits (51), Expect(2) = 3.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3 / +2
Query: 2796 SPEVFLPCFTARWFLLAWPLSLSCLC 2873
S V L C T ++L W L+LS C
Sbjct: 5579 SSAVVLRCLTTVFWLPVWALTLSICC 5656
Score = 20.3 bits (38), Expect(2) = 3.4
Identities = 4/11 (36%), Positives = 7/11 (63%)
Frame = +3 / +1
Query: 2892 LKKEKQGSWFD 2924
+K+ +G W D
Sbjct: 5737 MKRPFKGDWLD 5769
>gb|AE000482.1|AE000482 Escherichia coli K-12 MG1655 section 372 of 400 of the complete genome
Length = 20906
Score = 28.6 bits (56), Expect = 4.1
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +3 / +1
Query: 660 SQCQKSQGQVRLSSLRPHPVEPHPRVGQSTPRSREGRSQGWA*KSGQS 803
S+C G R RP + P +P GR +GW GQ+
Sbjct: 20239 SRCALILGPARRWVHRPESLSPAASAHGQSPHVAAGRRRGWKRADGQN 20382
>gb|AE000341.1|AE000341 Escherichia coli K-12 MG1655 section 231 of 400 of the complete
genome
Length = 10231
Score = 28.6 bits (56), Expect = 4.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2 / +2
Query: 2995 PGD*HCRFRVTVSGGGREEG 2936
PG H +R TVSG GRE G
Sbjct: 7538 PGWLHAVYRETVSGSGREAG 7597
>gb|AE000198.1|AE000198 Escherichia coli K-12 MG1655 section 88 of 400 of the complete genome
Length = 11639
Score = 28.6 bits (56), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1 / +3
Query: 2332 FPKSNY*TGGYYEGP*ASGFCL 2397
F +S * GGY+ GP +S FC+
Sbjct: 10947 FQRSGG*PGGYHAGPGSSPFCV 11012
>gb|AE000367.1|AE000367 Escherichia coli K-12 MG1655 section 257 of 400 of the complete
genome
Length = 11438
Score = 28.6 bits (56), Expect = 4.1
Identities = 8/27 (29%), Positives = 13/27 (47%)
Frame = +3 / -2
Query: 1332 CFLSPSFLWLSSCHRKGISNRVQFRMG 1412
C + +F+W + CH+ I F G
Sbjct: 7990 CLFAAAFVWFAKCHQPVIGRNTTFSKG 7910
>gb|AE000136.1|AE000136 Escherichia coli K-12 MG1655 section 26 of 400 of the complete genome
Length = 16823
Score = 28.6 bits (56), Expect = 4.1
Identities = 11/23 (47%), Positives = 12/23 (51%)
Frame = -2 / +1
Query: 2860 RLSGQARRNHLAVKHGRNTSGER 2792
RLSG+ RR A H SG R
Sbjct: 13873 RLSGKVRRRGSAASHFLYLSGSR 13941
>gb|AE000327.1|AE000327 Escherichia coli K-12 MG1655 section 217 of 400 of the complete
genome
Length = 10048
Score = 28.1 bits (55), Expect = 5.7
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = +1 / +2
Query: 1231 WTTSRAPLPH*VSCTVTSC 1287
W S P+PH C+V+SC
Sbjct: 2426 WRQSLYPIPHCYRCSVSSC 2482
>gb|AE000498.1|AE000498 Escherichia coli K-12 MG1655 section 388 of 400 of the complete
genome
Length = 10264
Score = 27.6 bits (54), Expect = 7.8
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3 / +3
Query: 2670 YAVFYITYCFSCPHECLF 2723
+ + T C SCPH C F
Sbjct: 4278 FITLHFT*CVSCPHNCSF 4331
>gb|AE000509.1|AE000509 Escherichia coli K-12 MG1655 section 399 of 400 of the complete
genome
Length = 10589
Score = 27.6 bits (54), Expect = 7.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2 / -3
Query: 682 PWLFWHWLRSWTSNPQP 632
P L W+W+R S+P+P
Sbjct: 261 PSLLWYWVRRCLSSPRP 211
>gb|AE000306.1|AE000306 Escherichia coli K-12 MG1655 section 196 of 400 of the complete
genome
Length = 10446
Score = 27.6 bits (54), Expect = 7.8
Identities = 7/18 (38%), Positives = 12/18 (65%)
Frame = +3 / +1
Query: 1341 SPSFLWLSSCHRKGISNR 1394
+P+ W+S CHR+ + R
Sbjct: 136 TPAGCWISGCHRRSVQQR 189
>gb|AE000203.1|AE000203 Escherichia coli K-12 MG1655 section 93 of 400 of the complete genome
Length = 10751
Score = 27.6 bits (54), Expect = 7.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1 / +3
Query: 1156 LLWATLR*RLMARKCSVPLVMAWLTWTTSRAPLPH*VSCTVTSCTWI 1296
+L T R A + +V + WT S P P + C+++S +W+
Sbjct: 1554 ILRLTYRLPTWAEPVTWAMVSSMRVWTPSVRP*PEALICSISSGSWL 1694
>gb|AE000208.1|AE000208 Escherichia coli K-12 MG1655 section 98 of 400 of the complete genome
Length = 10619
Score = 27.6 bits (54), Expect = 7.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3 / +3
Query: 981 LSCNLDTNLPRASPPTSSTFTLPHR 907
++C L + P ++TFTLPHR
Sbjct: 2829 VACTLTCKYRLSLPQRANTFTLPHR 2903
Database: ecoli.nt
Posted date: Jun 14, 2001 3:27 PM
Number of letters in database: 4,662,239
Number of sequences in database: 400
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 31907970
Number of Sequences: 400
Number of extensions: 491769
Number of successful extensions: 23184
Number of sequences better than 10.0: 20
length of query: 1000
length of database: 1,554,079
effective HSP length: 47
effective length of query: 953
effective length of database: 1,535,279
effective search space: 1463120887
effective search space used: 1463120887
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)
|
