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seed used = 30455833
BASEML (in paml 3.14, January 2004) m.phy HKY85 dGamma (ncatG=5)
ns = 3 ls = 57
# site patterns = 12
7 16 15 1 3 2 1 1 8 1 1 1
wih99_snap GTAGAGTACT TT
wm276_snap ...AGAG..G A.
jec21_snap ....GACT.. CC
Frequencies..
T C A G
wih99_snap 0.3509 0.1404 0.3333 0.1754
wm276_snap 0.2982 0.1404 0.3509 0.2105
jec21_snap 0.3158 0.1930 0.2982 0.1930
Average 0.3216 0.1579 0.3275 0.1930
# constant sites: 46 (80.70%)
ln Lmax (unconstrained) = -110.532715
Distances:HKY85 (kappa) (alpha set at 0.50)
This matrix is not used in later m.l. analysis.
wih99_snap
wm276_snap 0.3240( 9.3595)
jec21_snap 0.2974(33.1197) 0.1343( 1.1101)
TREE # 1: (2, 3, 1); MP score: 13.00
lnL(ntime: 3 np: 3): -129.328757 +0.000000
4..2 4..3 4..1
0.08669 0.05274 0.15105
tree length = 0.29048
(wm276_snap, jec21_snap, wih99_snap);
(wm276_snap: 0.086692, jec21_snap: 0.052740, wih99_snap: 0.151050);
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