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|
hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: ../Shared/Pfam_fs
Sequence file: single_porphyra_AA.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|90819130|dbj|BAE92499.1|
Accession: [none]
Description: glutamate synthase [Porphyra yezoensis]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glu_synthase Conserved region in glutamate synthas 858.6 3.6e-255 2
GATase_2 Glutamine amidotransferases class-II 731.8 3.9e-226 1
Glu_syn_central Glutamate synthase central domain 649.1 7.9e-213 1
GXGXG GXGXG motif 367.3 2.7e-107 1
HdeA hns-dependent expression protein A (H 9.6 0.015 1
GDC-P Glycine cleavage system P-protein 7.1 0.086 1
Cache_1 Cache domain 7.0 0.14 1
IBN_N Importin-beta N-terminal domain 8.2 0.17 1
DUF1200 Protein of unknown function (DUF1200) 6.7 0.42 1
cobW CobW/HypB/UreG, nucleotide-binding do 5.1 0.45 1
PUF Pumilio-family RNA binding repeat 6.5 0.47 1
Arch_flagellin Archaebacterial flagellin 4.1 0.66 1
FMN_dh FMN-dependent dehydrogenase 3.2 0.89 1
RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 4.6 1.4 1
DUF477 Domain of unknown function (DUF477) 3.8 1.7 1
FRG1 FRG1-like family 0.2 1.7 1
DUF1393 Protein of unknown function (DUF1393) 3.1 2 1
tRNA_anti OB-fold nucleic acid binding domain 4.9 2 1
SelT Selenoprotein T 3.1 2.2 1
RNase_PH_C 3' exoribonuclease family, domain 2 4.2 2.3 1
Pencillinase_R Penicillinase repressor 3.9 2.5 1
Hormone_4 Neurohypophysial hormones, N-terminal 4.4 2.5 1
DSRB Dextransucrase DSRB 2.7 2.7 1
FtsK_SpoIIIE FtsK/SpoIIIE family 2.6 3.1 1
UBA UBA/TS-N domain 4.2 3.1 1
DUF1981 Domain of unknown function (DUF1981) 3.6 3.3 1
Gla Vitamin K-dependent carboxylation/gam 4.0 3.5 1
Scm3 Centromere protein Scm3 2.2 3.5 1
Ribosomal_S6 Ribosomal protein S6 3.3 3.7 1
Cystatin Cystatin domain 2.4 3.9 1
Phage_prot_Gp6 Phage portal protein, SPP1 Gp6-like 1.0 4 1
DUF1976 Domain of unknown function (DUF1976) -1.5 4.3 1
DUF37 Domain of unknown function DUF37 3.0 4.5 1
Flavodoxin_NdrI NrdI Flavodoxin like 2.1 4.6 1
Bac_rhodopsin Bacteriorhodopsin 0.9 4.9 1
Nitro_FeMo-Co Dinitrogenase iron-molybdenum cofacto 2.1 5.3 1
MoCF_biosynth Probable molybdopterin binding domain 1.3 5.6 1
PaaA_PaaC Phenylacetic acid catabolic protein 0.4 5.6 1
Albicidin_res Albicidin resistance domain 1.7 5.7 1
DUF1514 Protein of unknown function (DUF1514) 3.5 5.7 1
T5orf172 T5orf172 domain 2.0 6.1 1
Nup133_N Nup133 N terminal like -0.6 6.5 1
BicD Microtubule-associated protein Bicaud -1.6 6.8 1
Sel1 Sel1 repeat 2.5 7 1
CAP_C DE Adenylate cyclase associated (CA 1.3 7.4 1
Colicin Colicin pore forming domain 1.4 7.5 1
MADF_DNA_bdg Alcohol dehydrogenase transcription f 1.8 8.2 1
DUF258 Protein of unknown function, DUF258 0.3 8.3 1
PspB Phage shock protein B 0.4 8.4 1
GspM General secretion pathway, M protein 1.0 8.6 1
Coq4 Coenzyme Q (ubiquinone) biosynthesis -0.3 9.1 1
P22_AR_N P22_AR N-terminal domain -0.2 9.5 1
C1_2 C1 domain 1.1 9.6 1
Phage_Mu_P Bacteriophage Mu P protein -0.4 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GATase_2 1/1 34 404 .. 1 385 [] 731.8 3.9e-226
FRG1 1/1 88 107 .. 151 173 .. 0.2 1.7
C1_2 1/1 191 210 .. 9 27 .. 1.1 9.6
MADF_DNA_bdg 1/1 235 261 .. 57 95 .] 1.8 8.2
PaaA_PaaC 1/1 258 269 .. 1 13 [. 0.4 5.6
Albicidin_res 1/1 274 289 .. 50 65 .. 1.7 5.7
UBA 1/1 311 331 .. 18 38 .] 4.2 3.1
Gla 1/1 342 357 .. 27 42 .] 4.0 3.5
RNA_pol_Rpb2_4 1/1 369 381 .. 1 13 [. 4.6 1.4
MoCF_biosynth 1/1 371 396 .. 23 49 .. 1.3 5.6
DUF1200 1/1 389 401 .. 1 13 [. 6.7 0.42
Nup133_N 1/1 397 419 .. 475 498 .] -0.6 6.5
DUF1976 1/1 428 448 .. 1296 1319 .] -1.5 4.3
Bac_rhodopsin 1/1 445 472 .. 219 250 .] 0.9 4.9
Coq4 1/1 459 481 .. 60 82 .. -0.3 9.1
Glu_syn_central 1/1 478 773 .. 1 301 [] 649.1 7.9e-213
Flavodoxin_NdrI 1/1 488 497 .. 122 131 .] 2.1 4.6
P22_AR_N 1/1 524 541 .. 110 126 .] -0.2 9.5
Cache_1 1/1 537 557 .. 1 23 [. 7.0 0.14
Glu_synthase 1/2 650 676 .. 297 323 .. 1.3 3
HdeA 1/1 727 749 .. 58 79 .] 9.6 0.015
Sel1 1/1 729 745 .. 32 49 .] 2.5 7
DUF1981 1/1 765 787 .. 62 88 .] 3.6 3.3
tRNA_anti 1/1 818 839 .. 54 85 .] 4.9 2
Cystatin 1/1 826 859 .. 1 38 [. 2.4 3.9
RNase_PH_C 1/1 827 846 .. 64 84 .] 4.2 2.3
Glu_synthase 2/2 830 1216 .. 1 412 [] 857.3 9e-255
DUF258 1/1 839 860 .. 282 305 .] 0.3 8.3
Pencillinase_R 1/1 856 894 .. 84 118 .] 3.9 2.5
SelT 1/1 872 885 .. 96 111 .] 3.1 2.2
Nitro_FeMo-Co 1/1 879 897 .. 87 105 .] 2.1 5.3
DUF37 1/1 927 934 .. 61 68 .] 3.0 4.5
Scm3 1/1 953 963 .. 103 113 .] 2.2 3.5
cobW 1/1 1038 1058 .. 202 222 .] 5.1 0.45
Arch_flagellin 1/1 1050 1072 .. 197 219 .] 4.1 0.66
DUF1393 1/1 1055 1068 .. 1 14 [. 3.1 2
FtsK_SpoIIIE 1/1 1107 1143 .. 163 198 .. 2.6 3.1
FMN_dh 1/1 1109 1148 .. 291 330 .. 3.2 0.89
DSRB 1/1 1120 1134 .. 1 16 [. 2.7 2.7
Phage_Mu_P 1/1 1122 1131 .. 1 10 [. -0.4 10
Hormone_4 1/1 1168 1176 .. 1 9 [] 4.4 2.5
GDC-P 1/1 1205 1225 .. 10 30 .. 7.1 0.086
PspB 1/1 1268 1276 .. 1 9 [. 0.4 8.4
T5orf172 1/1 1271 1293 .. 35 58 .. 2.0 6.1
CAP_C 1/1 1283 1292 .. 161 170 .] 1.3 7.4
GXGXG 1/1 1290 1485 .. 1 228 [] 367.3 2.7e-107
DUF1514 1/1 1453 1469 .. 50 66 .] 3.5 5.7
Colicin 1/1 1456 1467 .. 192 203 .] 1.4 7.5
Ribosomal_S6 1/1 1461 1481 .. 16 36 .. 3.3 3.7
BicD 1/1 1465 1481 .. 1 17 [. -1.6 6.8
PUF 1/1 1470 1486 .. 19 35 .] 6.5 0.47
DUF477 1/1 1472 1495 .. 1 24 [. 3.8 1.7
Phage_prot_Gp6 1/1 1479 1492 .. 1 14 [. 1.0 4
IBN_N 1/1 1498 1516 .. 1 20 [. 8.2 0.17
GspM 1/1 1506 1520 .. 1 15 [. 1.0 8.6
Alignments of top-scoring domains:
GATase_2: domain 1 of 1, from 34 to 404: score 731.8, E = 3.9e-226
CS EEEEEEEEETSSHSBHHHHHHHHHHHHHGGGGSSCSTTSSCECEEEE
*->CGvlGfiAhikgkpshkivedaleaLerLeHRGavgADgktGDGAGI
CGv GfiA+ ++ ++hkiv +aleaL+++eHRGa++AD ++GDGAGI
gi|9081913 34 CGV-GFIADVNNVANHKIVVQALEALTCMEHRGACSADRDSGDGAGI 79
CS EEECTCCCHHHHHHHCT----S GC-EEEEEEE-SSHHHHHHHHHHHHHH
ltqiPdgFFrevakelGieLpe.gqYAVGmvFLPqdelaraearkifEki
t+iP+++F++ ++++i++ ++ +VGm+FLP l+ + i+E +
gi|9081913 80 TTAIPWNLFQKSLQNQNIKFEQnDSVGVGMLFLPAHKLKES--KLIIETV 127
CS HHHTT-EEEEEEE--B-GGGS-HHHHHC--EEEEEEEE-TT--HHHHHHC
aeeeGLeVLGWReVPvnnsvLGetAlatePvIeQvFvgapsgdgedfErr
++ee+Le++GWR VP+ +vLG++A + P++eQvF+ +++ +++ +E++
gi|9081913 128 LKEENLEIIGWRLVPTVQEVLGKQAYLNKPHVEQVFCKSSNLSKDRLEQQ 177
CS EEEEECHSCHHHHTHHH. BEEEEEESSEEEEEECC-GGGHHHHBHG
LyviRkrieksivaenvn....fYiCSLSsrTIVYKGMLtseQLgqFYpD
L+++Rk+iek+i+ + + ++fYiCSLS++TIVYKGM++s++LgqFY+D
gi|9081913 178 LFLVRKKIEKYIGINGKDwaheFYICSLSCYTIVYKGMMRSAVLGQFYQD 227
CS GGSTTEEBSEEEEEECESSSSSCTGGGSSCEEECCCTTCEEEEEEEEETT
LqderfeSalAivHsRFSTNTfPsWplAQPfRVnslwgggivlAHNGEIN
L++++++S++Ai+H+RFSTNT+P+WplAQP+R ++ HNGEIN
gi|9081913 228 LYHSEYTSSFAIYHRRFSTNTMPKWPLAQPMR---------FVSHNGEIN 268
CS THHHHHHHHHHTSCCCSSTTCGHHHHCC-SSS-TTSCHHHHHHHHHHHHH
TlrgNrnwMraRegvlksplFgddldkLkPIvneggSDSaalDnvlEllv
Tl gN nwM++Re +l+s++++d++++LkPI n+++SDSa+lD ++Ell+
gi|9081913 269 TLLGNLNWMQSREPLLQSKVWKDRIHELKPITNKDNSDSANLDAAVELLI 318
CS HTT--HHHHHHHHS----TT-GGGTST-HHHHHHHHHHHHHHCCHCCEEE
raGRslpeAlMMlIPEAWqnnpdmdkdrpekraFYeylsglmEPWDGPAa
++GRs++eAlM+l+PEA+qn+pd +++e+ +FYey+sgl+EPWDGPA+
gi|9081913 319 ASGRSPEEALMILVPEAFQNQPDFA-NNTEISDFYEYYSGLQEPWDGPAL 367
CS EEEETSSEEEEEEETTTSCESEEEEEEEEEE.TTEEEEEESSC
lvftDGryavgAtLDRNGLTRPaRygiTrdldkDglvvvaSEa<-*
+vft+G++ +gAtLDRNGL RPaRy+iT kD+lv+v+SE+
gi|9081913 368 VVFTNGKV-IGATLDRNGL-RPARYVIT----KDNLVIVSSES 404
FRG1: domain 1 of 1, from 88 to 107: score 0.2, E = 1.7
*->FQkfKvDLqdrklrinekDkkel<-*
FQk+ Lq+ + +++D+ ++
gi|9081913 88 FQKS---LQNQNIKFEQNDSVGV 107
C1_2: domain 1 of 1, from 191 to 210: score 1.1, E = 9.6
*->idgfyg...fYsCkkccddftl<-*
i+g+++ ++fY C+ c +t+
gi|9081913 191 INGKDWaheFYICSLSC--YTI 210
MADF_DNA_bdg: domain 1 of 1, from 235 to 261: score 1.8, E = 8.2
*->drYrrelrkirqgnsegsstgsgesykskWryyeelsFL<-*
+++ ++r+ ++ +kW+++ ++F
gi|9081913 235 SSFAIYHRRFS------------TNTMPKWPLAQPMRFV 261
PaaA_PaaC: domain 1 of 1, from 258 to 269: score 0.4, E = 5.6
CS X............
*->MYnFvEHGGvint<-*
M Fv H G int
gi|9081913 258 M-RFVSHNGEINT 269
Albicidin_res: domain 1 of 1, from 274 to 289: score 1.7, E = 5.7
*->LrlmharEPsLrkgtG<-*
L+ m+ rEP L+ +++
gi|9081913 274 LNWMQSREPLLQSKVW 289
UBA: domain 1 of 1, from 311 to 331: score 4.2, E = 3.1
CS HHHHHHHHHTTT-HHHHHHHH
*->eeakkALeatngnverAvewL<-*
++a++ L a++ ++e+A+++L
gi|9081913 311 DAAVELLIASGRSPEEALMIL 331
Gla: domain 1 of 1, from 342 to 357: score 4.0, E = 3.5
CS CSSHHHHHHHHHHCTC
*->fednegtkefwrkYfg<-*
f++n+++ f++ Y g
gi|9081913 342 FANNTEISDFYEYYSG 357
RNA_pol_Rpb2_4: domain 1 of 1, from 369 to 381: score 4.6, E = 1.4
CS EEETTEEEEEESS
*->VYvNGklvGthrn<-*
V+ NGk++G + +
gi|9081913 369 VFTNGKVIGATLD 381
MoCF_biosynth: domain 1 of 1, from 371 to 396: score 1.3, E = 5.6
CS CHHHHHHHHHHHTTTCEEEEEEEE-SS
*->tNgpmLaalLresaGaevirygiVpDd<-*
tNg+ + a L + G ++ry+i +D+
gi|9081913 371 TNGKVIGATLDR-NGLRPARYVITKDN 396
DUF1200: domain 1 of 1, from 389 to 401: score 6.7, E = 0.42
*->kYvltedtLlIks<-*
+Yv+t+d L+I+s
gi|9081913 389 RYVITKDNLVIVS 401
Nup133_N: domain 1 of 1, from 397 to 419: score -0.6, E = 6.5
*->lylltrnsGvvrIeHaleedstne<-*
l++ + +sGvv++e + + s +
gi|9081913 397 LVIVSSESGVVQVE-PGNVKSKGR 419
DUF1976: domain 1 of 1, from 428 to 448: score -1.5, E = 4.3
*->VsvYiyFkevtdnksLsEysVtyk<-*
V++++ ++++nk ++ sVt k
gi|9081913 428 VDIFS--HKILNNKEIK-TSVTTK 448
Bac_rhodopsin: domain 1 of 1, from 445 to 472: score 0.9, E = 4.9
CS HHHHHHHHHHHHHHHHHCHHHTC---------
*->vvAKVgFgfilLrsravlertvavgsalaage<-*
v++K+++g +l ++r++le + + l+++
gi|9081913 445 VTTKIPYGELLTDARQILE--HK--PFLSDQQ 472
Coq4: domain 1 of 1, from 459 to 481: score -0.3, E = 9.1
*->rrILkEkPRissetldlkkLrkL<-*
r+IL kP s ++d kkL +L
gi|9081913 459 RQILEHKPFLSDQQVDIKKLMQL 481
Glu_syn_central: domain 1 of 1, from 478 to 773: score 649.1, E = 7.9e-213
CS HHHHHHCTT--HHHHHCTCHHHHHHSS--EE-S---S--CCC-SS--
*->llrrQkAFGYTyEdvelvllPMAetGkEalGSMGdDtPLAVLSekpr
l+++Q+AFGYT+Edvelv+++MA+++kE++++MGdD+PL +LSek++
gi|9081913 478 LMQLQTAFGYTNEDVELVIEHMASQAKEPTFCMGDDIPLSILSEKSH 524
CS -GGGCEEE----SSS----TTTTGGG-B--EEES--S-TTS-SGGGC-CE
lLYdYFKQlFAQVTNPPIDPIREelVMSLetylGpegNlLeptpeqarrl
+LYdYFKQ+FAQVTNP+IDP+RE+lVMSL+ ++G+++NlL+ p+ a+++
gi|9081913 525 ILYDYFKQRFAQVTNPAIDPLRESLVMSLAIQIGHKSNLLDDQPTLAKHI 574
CS EESSSB--HHHHHH.HHHH....CCCCEEEEESEEESTTSTTCHHHHHHH
kLesPILsnselekmlknidairegfkaatIditFdveeGvdgLeaaLdr
kLesP+++++el++ + + +++++ I+++F e+G++ ++ + +
gi|9081913 575 KLESPVINEGELNA-IFE-----SKLSCIRINTLFQLEDGPKNFKQQIQQ 618
CS HHHHHHHHHHCT-SEEEEESTCG--CTTEEE--HHHHHHHHHHHHHCTT-
lceeAeeAirsGaniivLSDRndildeervaIPaLLAvGAVHhHLIrkgL
lce A++Ai +G ni+vLSD+n+ ld+e+v+IP+LLAvGAVHhHLI kgL
gi|9081913 619 LCENASQAILDGNNILVLSDKNNSLDSEKVSIPPLLAVGAVHHHLINKGL 668
CS CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHHHHHCCCCCCC
RtkvslvVETGEaREvHHFAvLiGYGAsAInPYLAyETirdWWlirrGll
R+ +s+ VET++++++HHFA+LiGYGAsAI+PYLA+ET r+WW + ++++
gi|9081913 669 RQEASILVETAQCWSTHHFACLIGYGASAICPYLAFETARHWWSNPKTKM 718
CS CHTTTS- T--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--EEE
lmskGkl.elsleeavkNYrkAiekGlLKIMSKMGISTlqSYrGAQIFEA
lmskG+l++++++ea++NY+kA+e+GlLKI+SKMGIS+l+SY+GAQIFE+
gi|9081913 719 LMSKGRLpACNIQEAQANYKKAVEAGLLKILSKMGISLLSSYHGAQIFEI 768
CS SSB-H
vGLsk<-*
+GL++
gi|9081913 769 LGLGS 773
Flavodoxin_NdrI: domain 1 of 1, from 488 to 497: score 2.1, E = 4.6
CS -HHHHHHHHH
*->TneDVerVrk<-*
TneDVe V +
gi|9081913 488 TNEDVELVIE 497
P22_AR_N: domain 1 of 1, from 524 to 541: score -0.2, E = 9.5
*->dVLydYWtrkGkAv..NPR<-*
++LydY+ + +A +NP+
gi|9081913 524 HILYDYFK-QRFAQvtNPA 541
Cache_1: domain 1 of 1, from 537 to 557: score 7.0, E = 0.14
*->wTePYvdaalktgdlViTiaqPv<-*
+T+P++d + +++lV ++a+++
gi|9081913 537 VTNPAIDPL--RESLVMSLAIQI 557
Glu_synthase: domain 1 of 2, from 650 to 676: score 1.3, E = 3
CS --HHHHHHHHHHHHHCTT-CCCSEEEE
*->lPwelgLaevhqtLvengLRdrVsLia<-*
+P l++ +vh L++ gLR + s+ +
gi|9081913 650 IPPLLAVGAVHHHLINKGLRQEASILV 676
HdeA: domain 1 of 1, from 727 to 749: score 9.6, E = 0.015
*->ACk.QdkkAsFkdKvkaEldKvk<-*
AC Q+ +A++k+ v+a l K+
gi|9081913 727 ACNiQEAQANYKKAVEAGLLKIL 749
Sel1: domain 1 of 1, from 729 to 745: score 2.5, E = 7
CS .HHH.HHHHHHHHHHTT-
*->DyekeAlkwyekAAeqGn<-*
++++ A + y+kA e+G
gi|9081913 729 NIQE-AQANYKKAVEAGL 745
DUF1981: domain 1 of 1, from 765 to 787: score 3.6, E = 3.3
*->iFgvltlaakeesesivklAfqiid.qi<-*
iF++l+l++ v+lAf+ +++qi
gi|9081913 765 IFEILGLGSEV-----VNLAFKGTTsQI 787
tRNA_anti: domain 1 of 1, from 818 to 839: score 4.9, E = 2
CS EEEEEEETTSSTSTCTCTT..EEEEEEEEEEE
*->tGkvkkrpggeqNnlkTGeKAlelvveeievl<-*
+G v+ rpgge ++++ +e+
gi|9081913 818 YGFVQYRPGGE----------YHINNPEMSKA 839
Cystatin: domain 1 of 1, from 826 to 859: score 2.4, E = 3.9
CS ECEEEEET.STSHHHHHHHHHHHHHHHHHSSSSEEEEE
*->GglspvdpNendpevqealdfAlakyNeksndnylfel<-*
Gg +++ pe +al+ A+ yN + +ny++ l
gi|9081913 826 GGEYHINN----PEMSKALHQAVRGYNPEYYNNYQSLL 859
RNase_PH_C: domain 1 of 1, from 827 to 846: score 4.2, E = 2.3
CS SSSS.B.HHHHHHHHHHHHHH
*->GkgnglteelleealelAkeg<-*
G +++++ +++ +al++A+ g
gi|9081913 827 G-EYHINNPEMSKALHQAVRG 846
Glu_synthase: domain 2 of 2, from 830 to 1216: score 857.3, E = 9e-255
CS -SS-HHHHHHHHHHHHC--T-HHHHHHHHHHHHTS.-S-SGGGGEEE
*->hrnepeviktlqkavqvpveskpsydkYreplnertpigalrdlLef
h n+pe++k l++av+ + y +Y+ +l +r p++alrdlL++
gi|9081913 830 HINNPEMSKALHQAVRG--YNPEYYNNYQSLLQNR-PPTALRDLLKL 873
CS --SS--......--GGGS--HHHHHTTEEEEEB-CTTC-HHHHHHHHHHH
kyaeepldtdkiipieevepaleikkrfctgaMSyGALSeeAheALAiAm
++++p i+i+eve+++ i + fctg+MS+GALS+e+he+LAiAm
gi|9081913 874 QSNRAP------ISIDEVESIEDILQKFCTGGMSLGALSRETHETLAIAM 917
CS HHCT-EEEETTT---GGGCSB-TTS-T S BTTSTT--S--TT-B---SE
nriGtksNtGEGGedperlkpaadlds.G.SpTlpHLkGLqnednarSAI
nriG+ksN+GEGGedp r+k + d++s+G+Sp lpHLkGL+n+d+a+SAI
gi|9081913 918 NRIGGKSNSGEGGEDPVRFKILNDVNSsGtSPLLPHLKGLKNGDTASSAI 967
CS EEE-TT-TT--............HHHHCC-SEEEEE---TTSTTT--EE-
kQvASGRFGVtkRnGefWeefkRseYLvnAdalEIKiAQGAKPGeGGhLP
kQ+ASGRFGVt +eYL+nA++lEIKiAQGAKPGeGG+LP
gi|9081913 968 KQIASGRFGVT------------PEYLMNAKQLEIKIAQGAKPGEGGQLP 1005
CS GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-.TTS
GeKVspeIAriRnstPGvgliSPpPHHDIysiEDLaqLIydLkeindpkA
G+K+sp+IA +R ++PGv liSPpPHHDIysiEDL+qLI+dL++in pkA
gi|9081913 1006 GKKISPYIATLRKCKPGVPLISPPPHHDIYSIEDLSQLIFDLHQIN-PKA 1054
CS EEEEEEE-STTHHHHHHH...HHHTT-SEEEEE-TT---SSEECCHHHHC
pisVKLVsehgvgtiaaGhmqvakAnADiIlIdGhdGGTGASpktsikha
+isVKLVse g+gtiaaG vak+nADiI+I+GhdGGTGASp++sikha
gi|9081913 1055 KISVKLVSEIGIGTIAAG---VAKGNADIIQISGHDGGTGASPLSSIKHA 1101
CS ---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE
GlPwelgLaevhqtLvengLRdrVsLiadGGLrTGaDVakAaaLGAdavg
G PwelgL+evhq+L en+LRdrV+L++dGGLrTG D+++Aa++GA+++g
gi|9081913 1102 GSPWELGLSEVHQLLAENQLRDRVTLRVDGGLRTGSDIVLAAIMGAEEFG 1151
CS -SHHHHHHCT--S---CCCT--TTSSS---CCHH..CT----HHHHHHHH
iGTaaLiAlGCimaRvCHtntCPvGvATQDPeLrKrlkfegaperVvNyf
+GT+a+iA+GCimaR+CHtn+CPvGvATQ++eLr +f g+pe +vN+f
gi|9081913 1152 FGTVAMIATGCIMARICHTNKCPVGVATQREELR--ARFSGVPEALVNFF 1199
CS HHHHHHHHHHHHHHT-S
iflaeEvrellaqlGfr<-*
+f+ Evre+la+lG++
gi|9081913 1200 LFIGNEVREILASLGYK 1216
DUF258: domain 1 of 1, from 839 to 860: score 0.3, E = 8.3
CS HHHHHHHCTSS-HHHHHHHHHHHH
*->AVkaAveeGeIseeRYesYlklle<-*
A+ +Av +++e Y++Y+ ll+
gi|9081913 839 ALHQAVR--GYNPEYYNNYQSLLQ 860
Pencillinase_R: domain 1 of 1, from 856 to 894: score 3.9, E = 2.5
CS XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXX
*->drlfggsvgalvanfleee....klSeddieeLrelLde<-*
+ l++++++ ++ ++l+ ++++ ++S d++e ++++L++
gi|9081913 856 QSLLQNRPPTALRDLLKLQsnraPISIDEVESIEDILQK 894
SelT: domain 1 of 1, from 872 to 885: score 3.1, E = 2.2
*->KLqtGrvYAPPtpqEL<-*
KLq++r P++++E+
gi|9081913 872 KLQSNRA--PISIDEV 885
Nitro_FeMo-Co: domain 1 of 1, from 879 to 897: score 2.1, E = 5.3
CS EEE-TTSSBHHHHHHHHHC
*->pikagegetieeaiealqe<-*
pi e e+ie+ + ++ +
gi|9081913 879 PISIDEVESIEDILQKFCT 897
DUF37: domain 1 of 1, from 927 to 934: score 3.0, E = 4.5
*->hpGGyDPV<-*
++GG DPV
gi|9081913 927 GEGGEDPV 934
Scm3: domain 1 of 1, from 953 to 963: score 2.2, E = 3.5
*->HLraLeteddi<-*
HL++L+++d++
gi|9081913 953 HLKGLKNGDTA 963
cobW: domain 1 of 1, from 1038 to 1058: score 5.1, E = 0.45
CS ...HHHHHHHHHH-SSS-EEE
*->adlekleadlrrlnpeapiip<-*
+dl++l+ dl+++np+a+i
gi|9081913 1038 EDLSQLIFDLHQINPKAKISV 1058
Arch_flagellin: domain 1 of 1, from 1050 to 1072: score 4.1, E = 0.66
*->inpstkvrgeVvpenGapgtief<-*
inp k+++++v+e+G+ ++
gi|9081913 1050 INPKAKISVKLVSEIGIGTIAAG 1072
DUF1393: domain 1 of 1, from 1055 to 1068: score 3.1, E = 2
*->klSvKtVVAiGIGA<-*
k+SvK V iGIG+
gi|9081913 1055 KISVKLVSEIGIGT 1068
FtsK_SpoIIIE: domain 1 of 1, from 1107 to 1143: score 2.6, E = 3.1
*->lviDnydeLaeenlL.ervtsLknqGlsygvhvmata<-*
l++ + ++L +en+L++rvt+ + +Gl +g +++++a
gi|9081913 1107 LGLSEVHQLLAENQLrDRVTLRVDGGLRTGSDIVLAA 1143
FMN_dh: domain 1 of 1, from 1109 to 1148: score 3.2, E = 0.89
CS HHHHHHHHHCHHTTTSSEEEEESS-SSHHHHHHHHHHTSS
*->LpeVvPIlkeaAvkgdieVllDgGvRRGtDVlKALALGAr<-*
L eV +l e + +++ +DgG R+G+D++ A +GA+
gi|9081913 1109 LSEVHQLLAENQLRDRVTLRVDGGLRTGSDIVLAAIMGAE 1148
DSRB: domain 1 of 1, from 1120 to 1134: score 2.7, E = 2.7
*->mKvndrvtvKtDGgpR<-*
++ drvt + DGg R
gi|9081913 1120 -QLRDRVTLRVDGGLR 1134
Phage_Mu_P: domain 1 of 1, from 1122 to 1131: score -0.4, E = 10
*->sntVtLrvgG<-*
++VtLrv+G
gi|9081913 1122 RDRVTLRVDG 1131
Hormone_4: domain 1 of 1, from 1168 to 1176: score 4.4, E = 2.5
CS X-TT--TT-
*->CyirnCPrG<-*
C + CP+G
gi|9081913 1168 CHTNKCPVG 1176
GDC-P: domain 1 of 1, from 1205 to 1225: score 7.1, E = 0.086
*->eqqeMLstiGlssLddLidat<-*
e++e+L+++G++sLdd ++++
gi|9081913 1205 EVREILASLGYKSLDDITGQN 1225
PspB: domain 1 of 1, from 1268 to 1276: score 0.4, E = 8.4
*->MsaffLagP<-*
M+ ++La+P
gi|9081913 1268 MDDDILAIP 1276
T5orf172: domain 1 of 1, from 1271 to 1293: score 2.0, E = 6.1
*->dvvalievedaraklEklLHkrFk<-*
d+ a+ ev++a klE+++ k+Fk
gi|9081913 1271 DILAIPEVSNAI-KLETEITKHFK 1293
CAP_C: domain 1 of 1, from 1283 to 1292: score 1.3, E = 7.4
CS EEEEEE----
*->KLvTevveha<-*
KL+Te++ h
gi|9081913 1283 KLETEITKHF 1292
GXGXG: domain 1 of 1, from 1290 to 1485: score 367.3, E = 2.7e-107
CS EEEEE-TT--STTHHHHHHHHHHCTTTS.S-TTCEEEEEEEEE-TTT
*->keeaiiNtdrlvgtrlsgeiakkygeegalpkdtgkivfnGsAGqsf
k+++i Nt+r+vgtrlsg iak yg+ g + k+ +k++f+GsAGqsf
gi|9081913 1290 KHFKIANTNRTVGTRLSGIIAKNYGNTG-F-KGLIKLNFYGSAGQSF 1334
CS TTT-BTTEEEEEEEEE-S.TTTTT-ECCEEEEE--TT-.......SS-GG
GafmagGvtLeleGdAnddyvGkgmsGGeIvikgnagdpvGnnMdageyv
Gaf+a+G++L l+G+And yvGkgm+GG+Ivi+++ag +e +
gi|9081913 1335 GAFLASGINLKLMGEAND-YVGKGMNGGSIVIVPPAGT-------IYEDN 1376
CS GSEEC-SSTTTT--CEEEEESSEE-TTTTTT-.....CCEEEEESEB.-S
gnviaGNtclyGatGGkifiaGdAGerfgvrnkayKdsgatiVveGvaGd
++vi+GNtclyGatGG++f++G+AGerf+vrn s a+ VveGv Gd
gi|9081913 1377 NQVIIGNTCLYGATGGYLFAQGQAGERFAVRN-----SLAESVVEGV-GD 1420
CS STTTT-EEEEEEESS-B-SSBTTT--CCEEEEE-TTS.......THHHHB
hggEYMtGGtivVlGdaGrnvGagMtGGiaYvlgeiedfsyMiatlpgkv
h++EYMtGG+ivVlG+aGrnvGagMtGG+aY+l+e+e + ++v
gi|9081913 1421 HACEYMTGGVIVVLGKAGRNVGAGMTGGLAYFLDEDE-------NFIDRV 1463
CS -CCCEEEE...ES-S......CCHHHHHHHH
nleiVeledlkrievkrkklLpegekqlkel<-*
n+eiV+ + r+ + ++ge+qlk+l
gi|9081913 1464 NSEIVKIQ---RVIT------KAGEEQLKNL 1485
DUF1514: domain 1 of 1, from 1453 to 1469: score 3.5, E = 5.7
*->LeeyrieveRikkevkk<-*
L e+++ ++R++ e+ k
gi|9081913 1453 LDEDENFIDRVNSEIVK 1469
Colicin: domain 1 of 1, from 1456 to 1467: score 1.4, E = 7.5
CS SHHHHHHHHHCH
*->DdkfveklNkli<-*
D++f++ +N +i
gi|9081913 1456 DENFIDRVNSEI 1467
Ribosomal_S6: domain 1 of 1, from 1461 to 1481: score 3.3, E = 3.7
CS CCHHHHHHHHHHHHHCTT-EE
*->EqvkqeiekYqkvLtnngAei<-*
++v++ei k+q+v+t++g+e+
gi|9081913 1461 DRVNSEIVKIQRVITKAGEEQ 1481
BicD: domain 1 of 1, from 1465 to 1481: score -1.6, E = 6.8
*->gqaysnqrkvAkdGeer<-*
+ +++qr+ +k Gee+
gi|9081913 1465 SEIVKIQRVITKAGEEQ 1481
PUF: domain 1 of 1, from 1470 to 1486: score 6.5, E = 0.47
*->lQkllevateeqkqlil<-*
+Q+++++a+eeq ++++
gi|9081913 1470 IQRVITKAGEEQLKNLI 1486
DUF477: domain 1 of 1, from 1472 to 1495: score 3.8, E = 1.7
*->gtLspserarLeqalaalEqktga<-*
++++++ ++L ++ ++ktg+
gi|9081913 1472 RVITKAGEEQLKNLIENHAAKTGS 1495
Phage_prot_Gp6: domain 1 of 1, from 1479 to 1492: score 1.0, E = 4
*->eEmikkFidkHklr<-*
eE +k++i+ H+++
gi|9081913 1479 EEQLKNLIENHAAK 1492
IBN_N: domain 1 of 1, from 1498 to 1516: score 8.2, E = 0.17
CS HHHHHHHHHCCTHHCHHHHH
*->AEkqLeqlekqklPgfllaL<-*
A++ Le+++++ lP+f++ +
gi|9081913 1498 AHTILEKWNSY-LPQFWQVV 1516
GspM: domain 1 of 1, from 1506 to 1520: score 1.0, E = 8.6
CS XXXXXXXXXXXXXXX
*->mneLqawWqgrspRE<-*
++ L ++Wq ++p+E
gi|9081913 1506 NSYLPQFWQVVPPSE 1520
//
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