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hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: pfam
Sequence file: /home/birney/src/wise2/example/road.pep
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Query: roa1_drome
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SEED 146.1 6.3e-40 2
TEST 5.0 7.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SEED 1/2 33 103 .. 1 77 [] 71.2 2.2e-17
SEED 2/2 124 194 .. 1 77 [] 75.5 1.1e-18
Alignments of top-scoring domains:
SEED: domain 1 of 2, from 33 to 103: score 71.2, E = 2.2e-17
*->lfVgNLppdvteedLkdlFskfGpivsikivrDiiekpketgkskGf
lf+g+L + +t+e Lk++F+k G iv++ +++D + t++s+Gf
roa1_drome 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKD-----PRTKRSRGF 74
aFVeFeseedAekAlealnG.kelggrklrv<-*
+F+++ ++ + A + +++++gr+++
roa1_drome 75 GFITYSHSSMIDEAQK--SRpHKIDGRVVEP 103
SEED: domain 2 of 2, from 124 to 194: score 75.5, E = 1.1e-18
*->lfVgNLppdvteedLkdlFskfGpivsikivrDiiekpketgkskGf
lfVg L d +e+ ++d+F++fG iv+i+iv+D ketgk +Gf
roa1_drome 124 LFVGALKDDHDEQSIRDYFQHFGNIVDINIVID-----KETGKKRGF 165
aFVeFeseedAekAlealnGkelggrklrv<-*
aFVeF++++ ++k + ++l+g+ + v
roa1_drome 166 AFVEFDDYDPVDKVVL-QKQHQLNGKMVDV 194
//
Query: roa2_drome
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SEED 146.1 6.3e-40 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SEED 1/2 33 103 .. 1 77 [] 71.2 2.2e-17
SEED 2/2 124 194 .. 1 77 [] 75.5 1.1e-18
//
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