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BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman
(1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1141079027-8324-8848328247.BLASTQ4
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
3,742,891 sequences; 16,670,205,594 total letters
Query= pyrR, 558 bases, FB21E40C checksum.
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
gi|41400296|gb|AE016958.1| Mycobacterium avium subsp. paratub... 236 6e-59
gi|54013472|dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, co 127 4e-26
gi|57546753|dbj|BA000030.2| Streptomyces avermitilis MA-4680 gen 119 1e-23
ALIGNMENTS
>gi|41400296|gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete
genome
Length=4829781
Features in this part of subject sequence:
PyrR
Score = 236 bits (119), Expect = 6e-59
Identities = 248/291 (85%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 262 CCGCCGCGTCCGCTGGAGGCCACCTCCATTCCCGCGGGCGGTGTCGACGACGCGATCGTC 321
|||||||| ||||||||||||||||| || || || ||||| ||||||||||| | ||
Sbjct 1166897 CCGCCGCGGCCGCTGGAGGCCACCTCGATCCCGGCCGGCGGCATCGACGACGCGCTGGTG 1166956
Query 322 ATCCTCGTCGACGACGTCCTGTACTCGGGCCGCTCGGTCCGCTCGGCGCTGGACGCGCTG 381
||||| ||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1166957 ATCCTGGTCGACGACGTGCTCTACTCCGGCCGCTCGGTGCGCTCGGCACTGGACGCGCTG 1167016
Query 382 CGCGACATCGGTCGCCCCCGCATCGTGCAGCTGGCGGTGCTGGTCGACCGCGGGCACCGC 441
|||||| | || ||||| || | ||||| ||||||||||||||||||||||| ||||||
Sbjct 1167017 CGCGACGTGGGCCGCCCGCGGGTGGTGCAACTGGCGGTGCTGGTCGACCGCGGTCACCGC 1167076
Query 442 GAGCTGCCCATCCGGGCCGACTACGTGGGCAAGAACGTCCCGACCTCACGCAGCGAAAGC 501
|||||||| | || ||||||||||| |||||||||||||| ||||| ||||| || |||
Sbjct 1167077 GAGCTGCCGCTGCGCGCCGACTACGTCGGCAAGAACGTCCCCACCTCGCGCAGTGAGAGC 1167136
Query 502 GTCCACGTGCTGCTCAGCGAACACGACGACCGCGACGGAGTGGTGATCTCG 552
|| ||||||||||| ||| ||||||| | |||||| ||||||||||||
Sbjct 1167137 GTGCACGTGCTGCTGGCCGAGCACGACGGCGCCGACGGGGTGGTGATCTCG 1167187
>gi|54013472|dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
Length=6021225
Features in this part of subject sequence:
putative pyrimidine operon regulator
Score = 127 bits (64), Expect = 4e-26
Identities = 85/92 (92%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 406 GTGCAGCTGGCGGTGCTGGTCGACCGCGGGCACCGCGAGCTGCCCATCCGGGCCGACTAC 465
||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 3837536 GTGCAGCTGGCCGTGCTGGTCGACCGCGGCCACCGCGAGCTGCCGATCCGCGCCGACTAC 3837477
Query 466 GTGGGCAAGAACGTCCCGACCTCACGCAGCGA 497
|||||||||||||| || ||||| ||||||||
Sbjct 3837476 GTGGGCAAGAACGTGCCCACCTCCCGCAGCGA 3837445
>gi|57546753|dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
Length=9025608
Features in this part of subject sequence:
putative pyrimidine operon regulatory protein
Score = 119 bits (60), Expect = 1e-23
Identities = 135/160 (84%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 323 TCCTCGTCGACGACGTCCTGTACTCGGGCCGCTCGGTCCGCTCGGCGCTGGACGCGCTGC 382
||||||||||||||||||| | ||| |||||| | ||||| | || || |||||||||
Sbjct 8189890 TCCTCGTCGACGACGTCCTCTTCTCCGGCCGCACCATCCGCGCCGCCCTCGACGCGCTGA 8189949
Query 383 GCGACATCGGTCGCCCCCGCATCGTGCAGCTGGCGGTGCTGGTCGACCGCGGGCACCGCG 442
||||||||| ||||| ||| ||| ||||| ||||| || ||||||||||| |||||||
Sbjct 8189950 ACGACATCGGCCGCCCGCGCGCCGTACAGCTCGCGGTCCTCGTCGACCGCGGTCACCGCG 8190009
Query 443 AGCTGCCCATCCGGGCCGACTACGTGGGCAAGAACGTCCC 482
| ||||||||||| ||||||||||| ||||||||| ||||
Sbjct 8190010 AACTGCCCATCCGCGCCGACTACGTCGGCAAGAACCTCCC 8190049
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental
samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Feb 23, 2006 9:00 AM
Number of letters in database: -509,663,586
Number of sequences in database: 3,742,891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 3742891
Number of Hits to DB: 2465616
Number of extensions: 117843
Number of successful extensions: 1771
Number of sequences better than 1e-23: 0
Number of HSP's better than 1e-23 without gapping: 0
Number of HSP's gapped: 1771
Number of HSP's successfully gapped: 0
Length of query: 558
Length of database: 16670205594
Length adjustment: 22
Effective length of query: 536
Effective length of database: 16670205594
Effective search space: 8935230198384
Effective search space used: 8891094027712
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
S2: 60 (119.4 bits)
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