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|
# STOCKHOLM 1.0
#=GF AC RF00006
#=GF ID Vault
#=GF DE Vault RNA
#=GF AU Bateman A
#=GF SE Bateman A
#=GF SS Predicted; PFOLD; Bateman A
#=GF GA 25.00
#=GF TC 41.33
#=GF NC 23.46
#=GF TP Gene;
#=GF BM cmbuild CM SEED
#=GF BM cmsearch --local -W 150 CM SEQDB
#=GF DR URL; http://vaults.arc.ucla.edu/sci/sci_home.htm;
#=GF CC This family of RNAs are found as part of the enigmatic vault
#=GF CC ribonucleoprotein complex. The complex consists of a major
#=GF CC vault protein (MVP), two minor vault proteins (VPARP and TEP1),
#=GF CC and several small untranslated RNA molecules. It has been
#=GF CC suggested that the vault complex is involved in drug
#=GF CC resistance.
#=GF CC We have identified a putative novel vault RNA on chromosome 5
#=GF CC EMBL:AC005219.
#=GF SQ 11
Z11765.1/1-89 GGUCAGCAACAGCUC.AGCGGUUACUUCUCGA.....CACGGAAUUGUAA
AF210457.1/105-240 GGCCAGCUUUAGCUC.AGCGGUUAC..UUCGACAGUGGUUCAGUUCAU.U
AY007237.1/1-136 GGCCAGCUUUAGCUG.AGCGGUUAC..UUUGACAGUGUUUCAGUUCAU.U
Z11771.1/1-137 GGCCAGCUUUAGCUC.AGCGGUUAC..UUCGACGUGCUCCAGUUUGAGCA
AC116353.2/181870-181951 GGCUGGCUUUAGCUC.AGCGGUUAC..UUCGCGUGU.............C
AF058927.1/1-92 GGYCAGCUUYAGCUC.AGCGGUUAC..UUCGACAGUUCUUUAAUUG...A
AC005219.1/49915-50008 GGUCGGAGUUAGCUCAAGCGGUUAC..CUCCUCAUGCC...........G
AF058926.1/1-82 GGYCAGCWWYAGCUC.AGCGGUUAC..UUCGAGUAC.............A
AC116353.2/174637-174718 GGCUGGCUUUAGCUC.AGCGGUUAC..UUCGAGUAC.............A
AC116353.2/166987-167078 GGCUGGCUUUAGCUC.AGCGGUUAC..UUCGACAGUUCUUUAAUUG...A
Z97054.1/58392-58486 GGCUGGCUUUAGCUC.AGCGGUUAC..UUCGACAAUGCUUUCCAUGGUUA
#=GC SS_cons .<<<<<.....<<<<..<<<<.......<<<<..................
Z11765.1/1-89 UUCUG........................AAAACCUUUC...........
AF210457.1/105-240 ACCAGCUAUUCGUAGCAGGUUCGAACAACACAACCAACCACUUACCUAAC
AY007237.1/1-136 ACCAGCUAUUCGUAGCAGGUUCAAAUAACACAACCAACCACUUGCCUAAC
Z11771.1/1-137 GGCUAUGUAACGUGGUCGGUUCGAGCAACACAACCAGCCGCUUGCCUAUC
AC116353.2/181870-181951 AUCAA........................ACCACCUCUC...........
AF058927.1/1-92 AACAA........................GCAACCUGUC...........
AC005219.1/49915-50008 GACUU........................UCUAUCUGUCCAUCUCUGU..
AF058926.1/1-82 UUGUA........................ACCACCUCUC...........
AC116353.2/174637-174718 UUGUA........................ACCACCUCUC...........
AC116353.2/166987-167078 AACAA........................GCAACCUGUC...........
Z97054.1/58392-58486 GGAAA........................CCAACCUCUC...........
#=GC SS_cons ................................<<<...............
Z11765.1/1-89 ..........GGGGUUCGAAACCCGCGGGCGCCACCUGAC
AF210457.1/105-240 CCGUGAGUGUUUGGUUCGAGACCCGCGGGCGCUCCCUGGC
AY007237.1/1-136 CCAUGAGUGUUUGGUUCGAGACCGGCGGGCGCUCCCUGGC
Z11771.1/1-137 UGGUGAGUGGUUGGUUCGAGACCCGCGGGCGCUCUCUGGC
AC116353.2/181870-181951 .......UGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGC
AF058927.1/1-92 .......UGGGUGGUUCGARACCCGCGGCCGCUMYCUGGC
AC005219.1/49915-50008 .......GCUGGGGUUCGAGACCCGCGGGUGCUUACUGAC
AF058926.1/1-82 .......UGGGUGGUUCGARACCCGCGGSCGCYMYCUGRC
AC116353.2/174637-174718 .......UGGGUGGUUCGAGACCCGCGGGUGCUUUCCAGC
AC116353.2/166987-167078 .......UGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGU
Z97054.1/58392-58486 .......UGGGUGGUUUGAGACCCGUGGGCCCUCUCCAGU
#=GC SS_cons ............>>>>>>>...>>>>>>>>.....>>>>>
//
# STOCKHOLM 1.0
#=GF AC RF00007
#=GF ID U12
#=GF DE U12 minor spliceosomal RNA
#=GF AU Griffiths-Jones SR, Mifsud W
#=GF SE Shukla GC and Padgett RA, PMID:10199569
#=GF SS Published; PMID:10199569
#=GF GA 10.00
#=GF TC 11.43
#=GF NC undefined
#=GF TP Gene; snRNA; splicing;
#=GF BM cmbuild CM SEED
#=GF BM cmsearch -W 160 CM SEQDB
#=GF RN [1]
#=GF RM 10199569
#=GF RT Conservation of functional features of U6atac and U12 snRNAs between
#=GF RT vertebrates and higher plants.
#=GF RA Shukla GC, Padgett RA;
#=GF RL RNA 1999;5:525-538.
#=GF RN [2]
#=GF RM 9149533
#=GF RT Pre-mRNA splicing: the discovery of a new spliceosome doubles the
#=GF RT challenge.
#=GF RA Tarn WY, Steitz JA;
#=GF RL Trends Biochem Sci 1997;22:132-137.
#=GF RN [3]
#=GF RM 11864616
#=GF RT The divergent U12-type spliceosome is required for pre-mRNA splicing
#=GF RT and is essential for development in Drosophila.
#=GF RA Otake LR, Scamborova P, Hashimoto C, Steitz JA;
#=GF RL Mol Cell 2002;9:439-446.
#=GF CC The U12 small nuclear (snRNA), together with U4atac/U6atac, U5,
#=GF CC and U11 snRNAs and associated proteins, forms a spliceosome that
#=GF CC cleaves a divergent class of low-abundance pre-mRNA introns.
#=GF CC Although the U12 sequence is very divergent from that of U2
#=GF CC (Rfam:RF00004), the two are functionally analogous [2].
#=GF SQ 7
L43844.1/2-149 .UGCCUUAAACUUAUGAGUAAGGAAAAUAACAACU......CGGGGUGAC
L43843.1/2-150 .UGCCUUAAACUUAUGAGUAAGGAAAAUAACGAUU......CGGGGUGAC
L43846.1/332-460 .UGCCUUAAACUUAUGAGUAAGGAAAAUAACGAUU......CGGGGUGAC
L43845.1/357-512 AUGUCUUAAACUUAUGAGUAAGGAAAAUAACGAUUGUUAUUCGGGGUGAU
J04119.1/2-130 .UGCCUUAAACUUAUGAGUAAGGAAAAUAACGAUU......CGGGGUGAC
Z93241.11/76641-76790 AUGCCUUAAACUUAUGAGUAAGGAAAAUAACGAUU......CGGGGUGAC
AL513366.11/57716-57871 AUGUCUUAAACUUAUGAGUAAGGAAAAUAACGAUUGUUAUUCGGGGUGAU
#=GC SS_cons ...<<<<<..........>>>>>........<<<<......<<<<.....
L43844.1/2-149 GCCCGAGUCCUCACUACUGAUGUGAGAGGAAUUUUUGUGCGGGUACAGGU
L43843.1/2-150 GCCCGAGUCCUCACUGCUUAUGUGAGAAGAAUUUUUGAGCGGGUAUAGGU
L43846.1/332-460 GCCCGAAUCCUCACUGCUAAUGUGAGACGAAUUUUUGAGCGGGUAAAGGU
L43845.1/357-512 GCCCGAAUCCUCACUGCUAAUGUGAGACGAAUUUUUGAGCUGGUAAAGGU
J04119.1/2-130 GCCCGAAUCCUCACUGCUAAUGUGAGACGAAUUUUUGAGCGGGUAAAGGU
Z93241.11/76641-76790 GCCCGAAUCCUCACUGCUAAUGUGAGACGAAUUUUUGAGCGGGUAAAGGU
AL513366.11/57716-57871 GCCCGAAUCCUCACUGCUAAUGUGAGACGAAUUUUUGAGCUGGUAAAGGU
#=GC SS_cons .>>>>>>>><<<<<.......>>>>>...........<<<<<<<...<<<
L43844.1/2-149 CGUCCCC.GGGUGACCCGCUUACUUCGCGGGAUGCCCAGGUGCAAUGAUC
L43843.1/2-150 UGCAAUCUGAGCGACCCGCCUACUUUGCGGGAUGCCUGGGUGACGCGAUC
L43846.1/332-460 CGCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGCC..............
L43845.1/357-512 CGCCCCUAAGGUGACCAGCCUACUUUGCGGGAUGCCUAGGAGUCGCGAUC
J04119.1/2-130 CGCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGCC..............
Z93241.11/76641-76790 CGCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGCCUGGGAGUUGCGAUC
AL513366.11/57716-57871 CGCCCCUAAGGUGACCAGCCUACUUUGCGGGAUGCCUAGGAGUCGCGAUC
#=GC SS_cons <<<<.....>>>>>>>.>>>>>>>..<<<<<<<<<.........>>>>>>
L43844.1/2-149 UGCCCG
L43843.1/2-150 UGCCCG
L43846.1/332-460 ......
L43845.1/357-512 UGCCUG
J04119.1/2-130 ......
Z93241.11/76641-76790 UGCCCG
AL513366.11/57716-57871 UGCCUG
#=GC SS_cons >>>...
//
# STOCKHOLM 1.0
#=GF AC RF00008
#=GF ID Hammerhead_3
#=GF DE Hammerhead ribozyme (type III)
#=GF AU Bateman A
#=GF SE Bateman A
#=GF SS Published; PMID:7969422
#=GF GA 29.00
#=GF TC 29.53
#=GF NC 28.96
#=GF TP Gene; ribozyme;
#=GF BM cmbuild CM SEED
#=GF BM cmsearch -W 130 CM SEQDB
#=GF RN [1]
#=GF RM 7969422
#=GF RT Three-dimensional structure of a hammerhead ribozyme.
#=GF RA Pley HW, Flaherty KM, McKay DB;
#=GF RL Nature 1994;372:68-74.
#=GF RN [2]
#=GF RM 9506521
#=GF RT The structural basis of hammerhead ribozyme self-cleavage.
#=GF RA Murray JB, Terwey DP, Maloney L, Karpeisky A, Usman N, Beigelman L,
#=GF RA Scott WG;
#=GF RL Cell 1998;92:665-673.
#=GF RN [3]
#=GF RM 10899150
#=GF RT Distribution of hammerhead and hammerhead-like RNA motifs through the
#=GF RT GenBank.
#=GF RA Ferbeyre G, Bourdeau V, Pageau M, Miramontes P, Cedergren R;
#=GF RL Genome Res 2000;10:1011-1019.
#=GF CC The hammerhead ribozyme is one of the smallest catalytic
#=GF CC RNAs. These RNAs have an endonuclease function, and most
#=GF CC often are autocatalytic. Structurally it is composed of
#=GF CC three base paired helices, separated by short linkers of
#=GF CC conserved sequence. These helices are called I, II and III.
#=GF CC We have classified hammerhead ribozymes into three types
#=GF CC based on which helix the 5' and 3' ends of the sequence
#=GF CC join. This family are the type III hammerheads.
#=GF CC The conserved uridine-turn links helix I
#=GF CC to helix II and usually has the sequence CUGA. Helix II and
#=GF CC III are linked by a sequence CGAAA. The cleavage reaction
#=GF CC occurs between helix III and I, and is usually a C.
#=GF CC Hammerhead ribozymes are found in plant viroids and other
#=GF CC small replicating sattelite RNA species. Hammerhead
#=GF CC ribozymes have been found in animals as well as plants.
#=GF CC This family includes a couple of false matches currently
#=GF CC these are EMBL:AC078923 and EMBL:BC050488. These animal
#=GF CC sequences are not expected to be hammerhead ribozymes.
#=GF SQ 84
AJ295015.1/58-1 ACAGAGUC.UGACAAA......CCGUCACUGAAGACGUUCAACUU.....
AJ295018.1/58-1 ACAGGGUC.UGACAAA......CCGUCACUGAAGACGUUCAACUU.....
AJ536620.1/206-152 CCACCGUC.GGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA.........
AJ536615.1/1-44 .........GGGUGGUG.UGUACCAUCCCUGAUGAGUCCAA.........
AJ536612.1/206-152 UCACCGUC.GGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA.........
AJ536617.1/1-40 .........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGA.........
AJ536614.1/206-152 UCACCGUC.GGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA.........
AJ536620.1/1-40 .........GGGUGGUGUGUG.CCACCCCUGAUGAGUCCGA.........
AJ536619.1/206-152 CCACCGUC.GGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA.........
AJ550911.1/56-3 CAAAAGUC.UGGGCUA......AGCCCACUGAUGAGUUGCUGA.......
AF170503.1/280-333 GAAAGGUC.UGUGCUU......AGCACACUGACGAGUUCCUGA.......
AF170504.1/284-337 GAUAAGUC.UGUGCUA......AGCACACUGAUGAGUCUCUGA.......
AJ550912.1/56-3 CAAAAGUC.UGGGCUA......AGCCCACUGAUGAGUUGCUGA.......
AJ247113.1/134-53 .UCCAGUC.GAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGC
AJ241833.1/282-334 AAAGAGUC..GUGCUA......AGCACACUGAUGAGUCUCUGA.......
AJ241841.1/57-3 CAAAAGUU.UGGGCUAA.....AGCCCACUGAUGAGCCGCUGA.......
AJ241839.1/282-334 GAUGAGUC..GUGCUA......AGCACACUGAUGAGUCUCUGA.......
AJ550901.1/282-334 GAAGAGUC..GCGCUA......AGCGCACUGAUGAGUCUUUGA.......
AJ005298.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGUUGA.......
AJ241819.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGUUGA.......
AJ005320.1/281-333 GAAGAGUC..GUGCUA......AGCACACUGAUGAGUCUCUGA.......
AJ005310.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGCUGA.......
AF339740.1/56-3 CAUAAGUC.UGGGCUU......AGCCCACUGAUGAGCCGUUGA.......
AJ241828.1/56-3 CAUAAGUC.UGGGUUA......AGCCCACUGAUGAGCCGUUGA.......
AJ550906.1/56-3 CAUAAGUC.UGGGCUU......AGCCCACUGAUGAGUCGCUGC.......
AJ550903.1/281-333 GAAGAGUC..GUGCUU......AGCACACUGAUGAGUCUCUGA.......
AJ241831.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGUUGA.......
AJ241840.1/56-3 CAGAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGCUGA.......
AJ005303.1/56-3 CAAAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGUUGA.......
AJ005312.1/56-3 CAAAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGCUGA.......
AJ550906.1/282-334 GAAGAGUC..GUGCUU......AGCACACUGAUGAGUCUCUGA.......
AJ550907.1/56-3 CAUAAGUC.UGGGCUU......AGCCUACUGAUGAGUCGCUGC.......
AF170503.1/55-3 CAUAAGUC.UGGGCUU......AG.CCACUGACGAGUCGCUGG.......
Y14700.1/133-53 .UCCAGUC.GAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGC
AJ005321.1/281-333 GAAGAGUC..GUGCUA......AGCACACUGAUGAGUCUCUGA.......
AJ241845.1/282-335 GAUGAGUC.UGUGCUA......AGCACACUGAUGAGUCUCUGA.......
AJ005322.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGACGAGCCGUUGA.......
M83545.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGAUGAGUCGCUGA.......
AJ005305.1/56-3 CAAAAGUC.UGGGCUA......AGCCCACUGACGAGCCGCUGG.......
AJ550908.1/281-334 GAAGAGUC.UGCGCUU......AGCGCACUCAUGAGUCUCUGA.......
AJ550909.1/56-3 CAUAAGUC.UGGGCUU......AGCCCACUGAUGAGUUGCUGC.......
AJ241843.1/56-3 CAUAAGUC.UGGGCUU......AGCCCACUGAUGAGCCACUGA.......
AF170523.1/55-3 CAAAAGUC.UGGGCUU......AG.CCACUGAUGAGCCGUUGA.......
AF170509.1/56-3 CAUAAGUC.UAGGCUU......AGCCCACUGAUGAGCCGUUGA.......
AJ241847.1/281-334 GAAGAGUC.UGUGCUA......AGCACACUGAUGAGUUUCUGA.......
AJ241823.1/282-335 AAAGAGUC.UGUGCUA......AGCACACUGAUGAGUCUCUAA.......
AJ247122.1/132-52 .UCCAGUC.GAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGC
AJ005300.1/282-335 UAAGAGUC.UGUGGUA......AGCACACUGAUGAGUCUCUGA.......
AJ005302.1/281-334 AAAGAGUC.UGUGCUA......AGCACACUGAUGAGUCUCUGA.......
AJ005318.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGUUGA.......
AF339739.1/56-3 CAUAAGUC.UGGGCUU......AGCCCACUGAUGAGGCGUUGA.......
AJ241838.1/56-3 CAAAAGUC.UGGGCUA......AGCCCACUGAUGAGCUGCUGA.......
AJ247121.1/133-53 .UCCAGUC.GAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGC
AJ550911.1/282-335 GAAGAGUC.UGUGCUA......AGCACACUGACGAGUCUCUGA.......
AJ550898.1/282-335 GAAGAGUC.UGCGCUA......AGCGCACUGAUGAGUCUUUGA.......
AF170516.1/283-335 GAAGAGUC..GUGCUU......AGCACACUGAUGAGUCUCUGA.......
AJ005319.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGUUGA.......
AJ550899.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGAUGAGCCUUUGC.......
AF170519.1/55-3 CAUAAGUC.UGGGCUU......AG.CCACUGAUGAGCCGUUGA.......
AJ247116.1/133-53 .UCCAGUC.GAGACCUGAAGUGGGUUUACUGAUGAGGCUGUGGAGAGAGC
AJ550907.1/281-333 AAAGAGUC..GCGCUU......AGCGCACUGAUGAGUCUCUGA.......
AJ241850.1/282-334 UAAGAGUC..GUGCUA......AGCACACUGAUGAGUCUCUGA.......
AF170499.1/56-3 CAAAAGUC.UGGGCUA......AGCCCACUGAUGAGCCGCUGA.......
AF170520.1/282-335 GAUAAGUC.UGUGCUU......AGCACACUGAUGAGUCUCUGA.......
AJ005299.1/282-335 UAAGAGUC.UGUGCUA......AGCACACUGAUGAAUCUCUGA.......
AJ005312.1/282-335 GAUGAGUC.UGUGCUA......AGCACACUGAUGAGUCUAUGA.......
AJ550909.1/282-333 GAAGAGUC..GCGCUU......AGCGCACUGAUGAGUCUCUGA.......
AJ005322.1/281-334 GAAGAGUC.UGUGCUA......AGCACACUGACGAGUCUCUGA.......
AJ005294.1/282-334 UAAGAGUC..GUGCUA......AGCACACUGAUGAGUCUCUGA.......
AJ247123.1/132-52 .UCCAGUC.GAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGC
AJ550900.1/56-3 CAUAAGUC.UGGGCUA......AGCCCACUGAUGAGCCUUUGC.......
AJ241830.1/282-334 AAAGAGUC..GUGCUA......AGCACACUGAUGAGUCUCUGA.......
AJ241831.1/281-334 GAAGAGUC.UGUGCUA......AGCACACUGAUGAGUCUCUGA.......
M83545.1/282-335 GAAGAGUC.UGUGCUA......AGCACACUGACGAGUCUCUGA.......
AJ550910.1/282-336 GAAGAGUCCUGCGCUU......AGCGCACUGACGAGUCUCUGA.......
AJ005314.1/281-334 AAAGAGUC.UGUGCUA......AGCACACUGACGAGUCUCUGA.......
Y12833.1/339-285 CCGCUAUA.UGGGGAUGUGUG.UCCCUACUGACGAGUUCAA.........
M63666.1/246-192 CCGGUGUC.UCAAGGUGCGUA.CCUUGACUGAUGAGUCCGA.........
J02439.1/42-95 UGUCCGUA..GUGGAUGUGUA.UCCACUCUGAUGAGUCCGA.........
J02386.1/42-95 UGUCCGUA..GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA.........
M33000.1/55-110 ACGCUGUC.UGUACUUGUAUC.AGUACACUGACGAGUCCCU.........
M33001.1/56-111 ACGCUGUC.UGUACUUAUAUC.AGUACACUGACGAGUCCCU.........
D00685.1/1-46 .........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA.......
M17439.1/1-48 .........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU.........
#=GC SS_cons .<<<<<<..<<<<<.........>>>>>.......<<<<...........
AJ295015.1/58-1 ...............GCGUUGAACAGAAACUCUGC
AJ295018.1/58-1 ...............GCGUUGAACAGAAACUCUGC
AJ536620.1/206-152 ...................AAGGGCGAAACGGUAC
AJ536615.1/1-44 ...................AAGGACGAAAUGG...
AJ536612.1/206-152 ...................AAGGGCGAAACGGUAC
AJ536617.1/1-40 ...................AAGGACGAA.......
AJ536614.1/206-152 ...................AAGGGCGAAACGGUAC
AJ536620.1/1-40 ...................AAGGACGAA.......
AJ536619.1/206-152 ...................AAGGACGAAACGGUAC
AJ550911.1/56-3 .................AACGCAACGAAACUUUUG
AF170503.1/280-333 .................AAUGGAACGAAACCUUUU
AF170504.1/284-337 .................AAUGAGACGAAACUUAUC
AJ550912.1/56-3 .................GAUGCGACGAAACUUUUG
AJ247113.1/134-53 AAAUUGCUUUACUCCCGCACAAGCCGAAACUGGA.
AJ241833.1/282-334 .................AAUGAGACGAAACUCUUU
AJ241841.1/57-3 .................AAUGCGGCGAAACUUUUG
AJ241839.1/282-334 .................AAUGAGACGAAACUCAUA
AJ550901.1/282-334 .................GAUAAGACGAAACUCUUC
AJ005298.1/56-3 .................GAUACGGCGAAACUUUUG
AJ241819.1/56-3 .................AAUACGGCGAAACUUUUG
AJ005320.1/281-333 .................AAUGAGACGAAACUCUUU
AJ005310.1/56-3 .................AAUGCGGCGAAACUUUUG
AF339740.1/56-3 .................GAUACGGCGGAACUUAUG
AJ241828.1/56-3 .................GAUACGGCGAAACUUAUG
AJ550906.1/56-3 .................GAUGCGACGAAACUUAUG
AJ550903.1/281-333 .................AAUGAGACGAAACUCUUU
AJ241831.1/56-3 .................GAUACGGCGAAACUUCUG
AJ241840.1/56-3 .................AAUGCGGCGAAACUUUUG
AJ005303.1/56-3 .................GAUACGGCGAAACUUUUG
AJ005312.1/56-3 .................AAUGCGGCUAAACUUUUG
AJ550906.1/282-334 .................GAUGAGACGAAACUCUUC
AJ550907.1/56-3 .................GAUGCGACGAAACUUAUG
AF170503.1/55-3 .................GAUACGGCGAAACUUAUG
Y14700.1/133-53 GAAAGCUUUACUCCCA.CACAAGCCGAAACUGGA.
AJ005321.1/281-333 .................AAUGAGACGAAACUCUUG
AJ241845.1/282-335 .................AAUGAGACGAAACUCAUG
AJ005322.1/56-3 .................GAUACGGCGAAACUUAUG
M83545.1/56-3 .................AAUGCGACGAAACUUAUG
AJ005305.1/56-3 .................GAUACGGCGAAACUUUUG
AJ550908.1/281-334 .................GAUGAGACGAAACUCUUC
AJ550909.1/56-3 .................GAUGCAACGAAACUUAUG
AJ241843.1/56-3 .................AAUGCGGCGAAACUUUUG
AF170523.1/55-3 .................GAUACGGCGAAACUUUUG
AF170509.1/56-3 .................GAUACGGCGAAACUUAUG
AJ241847.1/281-334 .................AAUGAGACGAAACUCUUG
AJ241823.1/282-335 .................AAUGAGACGAAACUCUUU
AJ247122.1/132-52 UAUUGCUUUACUCCCG.CACAAGCCGAAACUGGA.
AJ005300.1/282-335 .................AAUGAGACGAAACUCUUG
AJ005302.1/281-334 .................AUUGAGACGAAACUCUUG
AJ005318.1/56-3 .................GAUACGGUGAAACUUAUG
AF339739.1/56-3 .................GAUACGGCGAAACUUAUG
AJ241838.1/56-3 .................AAUGCGGCAAAACUUUUG
AJ247121.1/133-53 UUUCGCUUUACUCCCG.CACAAGCCGAAACUGGA.
AJ550911.1/282-335 .................AAUGAGACGAAACUCUUC
AJ550898.1/282-335 .................AAUAAGACGAAACUCUUC
AF170516.1/283-335 .................AAUGAGACGAAACUCUUC
AJ005319.1/56-3 .................GAUACGGCGAAACUUAUG
AJ550899.1/56-3 .................GAUAAGGCGAAACUUAUG
AF170519.1/55-3 .................GAUACGGCGAAACUUAUG
AJ247116.1/133-53 GAAAGCUUUACUCCCA.CACAAGCCGAAACUGGA.
AJ550907.1/281-333 .................GAUGAGACGAAACUCUUC
AJ241850.1/282-334 .................AAAGAGACGAAACUCUUU
AF170499.1/56-3 .................AAUGCGGCGAAACUUUUG
AF170520.1/282-335 .................AAUGAGACGAAACUUAUC
AJ005299.1/282-335 .................AAUGAGACGAAACUCUUG
AJ005312.1/282-335 .................AAUGAGACGAAACUCAUA
AJ550909.1/282-333 ..................AUGAGACGAAACUCUUC
AJ005322.1/281-334 .................AAUGAGACGAAACUCUUU
AJ005294.1/282-334 .................AAUGAGACGAAACUCUUG
AJ247123.1/132-52 GAAAGCUUUACUCCCG.CACAAGCCGAAACUGGA.
AJ550900.1/56-3 .................GACAAGGCGAAACUUAUG
AJ241830.1/282-334 .................AAUGAGACGAAACUCUUG
AJ241831.1/281-334 .................AAUGAGACGAAACUCUUA
M83545.1/282-335 .................GAUGAGACGAAACUCUUC
AJ550910.1/282-336 .................GAUGAGACGAAACUCUUC
AJ005314.1/281-334 .................AAUGAGACGAAACUCUUU
Y12833.1/339-285 ...................AAGAACGAAAUAGUUA
M63666.1/246-192 ...................AAGGACGAAACACCAG
J02439.1/42-95 ...................AAGGACGAAACGGAUG
J02386.1/42-95 ...................AAGGACGAAACGGAUG
M33000.1/55-110 ..................AAAGGACGAAACAGCGC
M33001.1/56-111 ..................AAAGGACGAAACAGCGC
D00685.1/1-46 .....................GGACGAAACAGUA.
M17439.1/1-48 ...................GAGGACGAAACAGGAC
#=GC SS_cons .....................>>>>...>>>>>>.
//
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