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|
sequence TTCCTTGGCCGCTCTGGTCAGCCCTCGCGATATCCGTATCTCTCCCCGCAGCCAGTCTACATCCCmCCATTCTACCGCGATGAGTTCGCTGGTCCGCAGCCCGGTCCACATGGCGAACTGCAACAGGTTCCGGTACTGGCCATCGGTGCCGGCCAGArTCAGTCGCTGCTCTTCCGGCGAGAACGGATCArTCTCGTCCTCGGTCyTCGGCTTCTCCCTGACCGAGTACGTCCAGCCCGCCAGCGGGTTGATCTCGAyCAGTTCGTCATGCACGGCATCATCTAGCGCCGACCGTAGGCAGCTCTGTACGTTCGACAGGCGCTTGTTCGAGGCGTCCATGCTCGCCATAGCCTCCTTGATCATCTTGCGACTGAGCAGCACCAGGGGATGATCGCCCAGCyTCGGCACCAGTACCCCGTCGATGATCTTCCGATAGCCATCGATGGTGCTTGCCTTCAGGACCTTCTCTTTCTTCTCCCGCCAGCTTGCGAGGTATTTCGACAACGGTACTTGCCCGGTCTGGTATCCAAGCCGATTGGCTCGCTTGGACTTGGGGAAGGTGGCCAGATAGTCGAACGTGCCGTTGTAGATCGTCAGTTCGATAGCGGCCTTGTGCTGCTCGACGCGTTTCAGGTTAGCGGGGCTGGGCTCAAGTGGGATGCGTTCGCGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCGCTCTGAcGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTTGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTCACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGGgTCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGGCTTCAGCCATGArGCAGGCGTCGCACGGcTCAGACTTGCTCGCCGCCCCATCCCTGAACCCGTCCCGCGAAGCATTGGCCATGTCTACGGCGGTGTAGAGCGGAGTAGGGCCGCCGCGCAGGTGTTCGATCATCTTGGCCTGCTGAGCGACTGTGGCTTCCAGGGCGATAATTTTGTAGTCCTGCTCG
lsequence TTCCTTGGCCGCTCTGGTCAGCCCTCGCGATATCCGTATCTCTCCCCGCAGCCAGTCTACATCCCmCCATTCTACCGCGATGAGTTCGCTGGTCCGCAGCCCGGTCCACATGGCGAACTGCAACAGGTTCCGGTACTGGCCATCGGTGCCGGCCAGArTCAGTCGCTGCTCTTCCGGCGAGAACGGATCArTCTCGTCCTCGGTCyTCGGCTTCTCCCTGACCGAGTACGTCCAGCCCGCCAGCGGGTTGATCTCGAyCAGTTCGTCATGCACGGCATCATCTAGCGCCGACCGTAGGCAGCTCTGTACGTTCGACAGGCGCTTGTTCGAGGCGTCCATGCTCGCCATAGCCTCCTTGATCATCTTGCGACTGAGCAGCACCAGGGGATGATCGCCCAGCyTCGGCACCAGTACCCCGTCGATGATCTTCCGATAGCCATCGATGGTGCTTGCCTTCAGGACCTTCTCTTTCTTCTCCCGCCAGCTTGCGAGGTATTTCGACAACGGTACTTGCCCGGTCTGGTATCCAAGCCGATTGGCTCGCTTGGACTTGGGGAAGGTGGCCAGATAGTCGAACGTGCCGTTGTAGATCGTCAGTTCGATAGCGGCCTTGTGCTGCTCGACGCGTTTCAGGTTAGCGGGGCTGGGCTCAAGTGGGATGCGTTCGCGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCGCTCTGA-cGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTTGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTCACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGGgTCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGGCTTCAGCCATGArGCAGGCGTCGCACGGcTCAGACTTGCTCGCCGCCCCATCCCTGAACCCGTCCCGCGAAGCATTGGCCATGTCTACGGCGGTGTAGAGCGGAGTAGGGCCGCCGCGCAGGTGTTCGATCATCTTGGCCTGCTGAGCGACTGTGGCTTCCAGGGCGATAATTTTGTAGTCCTGCTCG
quality 0x0B0B0B0B0B0B0B0B0B0404040404040404040404040404040E04040404040404040404040404040402020202020202020202020202020202020202020202020202160202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020404040404040404040404040404040404040416040404040404040404040404040404040404040404040404040404040404040416040404040404040404040404040416040404040404040404040404040404040402020202020202020202020202020202020202020202020202020202020202020202160202020202020202020202020202020202020909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090202020D02020D02020202020202020202020202020202020202020202020202020202020202020201010101010101010101010101010102020216020202020202020202020202020202020202020202020202020202020202020202020202090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303080303030303110303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303080303030303030303030303030303030303030303030303030303030303030303030303030803030303030303030303030303030303030303030303030303030303030303030303030303030303030313030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303050505050505050505050505050505050505050C0505050505050505050505160505050505050505050505050505050E050505050505050505050505050505050505050E050505050505050505050505050505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 2
seq_id
com_name
type
method asmg
ed_status
redundancy 2.13
perc_N 0.80
seq# 6
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_013_C07.x01.phd.1
asm_lend 1
asm_rend 276
seq_lend 1
seq_rend 276
best 0
comment
db sdsu
offset 0
lsequence TTCCTTGGCCGCTCTGGTCAGCCCTCGCGATATCCGTATCTCTCCCCGCAGCCAGTCTACATCCCCCCATTCTACCGCGATGAGTTCGCTGGTCCGCAGCCCGGTCCACATGGCGAACTGCAACAGGTTCCGGTACTGGCCATCGGTGCCGGCCAGAATCAGTCGCTGCTCTTCCGGCGAGAACGGATCAATCTCGTCCTCGGTCTTCGGCTTCTCCCTGACCGAGTACGTCCAGCCCGCCAGCGGGTTGATCTCGACCAGTTCGTCATGCACGGC
seq_name SDSU_RFPERU_013_G10.x01.phd.1
asm_lend 10
asm_rend 437
seq_lend 428
seq_rend 1
best 0
comment
db sdsu
offset 9
lsequence CGCTCTGGTCAGCCCCCGCGATATCCGTATCTCTCCCCGCAGCCAGTCTACATCCCACCATTCTACCGCGATGAGTTCGCTGGTCCGCAGCCCGGTCCACATGGCGAACTGCAACAGGTTCCGGTACTGGCCATCGGTGCCGGCCAGAGTCAGTCGCTGCTCTTCCGGCGAGAACGGATCAGTCTCGTCCTCGGTCCTCGGCTTCTCCCTGACCGAGTACGTCCAGCCCGCCAGCGGGTTGATCTCGATCAGTTCGTCATGCACGGCATCATCTAGCGCCGACCGTAGGCAGCTCTGTACGTTCGACAGGCGCTTGTTCGAGGCGTCCATGCTCGCCATAGCCTCCTTGATCATCTTGCGACTGAGCAGCACCAGGGGATGATCGCCCAGCTTCGGCACCAGTACCCCGTCGATGATCTTCCGATAGC
seq_name SDSU1_RFPERU_001_A09.x01.phd.1
asm_lend 343
asm_rend 839
seq_lend 2
seq_rend 496
best 0
comment
db sdsu
offset 342
lsequence CGC-ATCGCCTCCTTGATCATCTTGCGACTGAGCAGCACCAGGGGATGATCGCCCAGCCTCGGCACCAGTACCCCGTCGATGATCTTCCGATAGCCATCGATGGTGCTTGCCTTCAGGACCTTCTCTTTCTTCTCCCGCCAGCTTGCGAGGTATTTCGACAACGGTACTTGCCCGGTCTGGTATCCAAGCCGATTGGCTCGCTTGGACTTGGGGAAGGTGGCCAGATAGTCGAACGTGCCGTTGTAGATCGTCAGTTCGATAGCGGCCTTGTGCTGCTCGACGCGTTTCAGGTTAGCGGGGCTGGGCTCAAGTGGGATGCGTTCGCGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCG-TCTGA-CGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTT
seq_name SDSU1_RFPERU_001_B04.x01.phd.1
asm_lend 498
asm_rend 1123
seq_lend 1
seq_rend 623
best 0
comment
db sdsu
offset 497
lsequence TCGACAACGGTACTTGCCCGGTCTGGTATCCAAGCCGATTGGCTCGCTTGGACTTGGGGAAGGTGGCCAGATAGTCGAACGTGCCGTTGTAGATCGTCAGTTCGATAGCGGCCTTGTGCTGCTCGACGCGTTTCAGGTTAGCGGGGCTGGGCTCAAGTGGGATGCGTTCGCGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCGCTCTGA-CGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTCGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTCACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGGGTCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGG-TTCAGCCATGAGGCAGGCGTCGCACGG-TCAGACTTGCTCGCCGCCC-ATCCCTGAACCCGTCC
seq_name SDSU_RFPERU_015_G04.x01.phd.1
asm_lend 668
asm_rend 1082
seq_lend 1
seq_rend 416
best 0
comment
db sdsu
offset 667
lsequence CGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCGCTCTGAACGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTTGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTAACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGGGTCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGGCTTCAGCCATGAAGCAGGCGTCGC
seq_name SDSU_RFPERU_014_H06.x01.phd.1
asm_lend 833
asm_rend 1246
seq_lend 1
seq_rend 413
best 0
comment
db sdsu
offset 833
lsequence CGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTTGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTCACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGG-TCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGGCTTCAGCCATGAAGCAGGCGTCGCACGGCTCAGACTTGCTCGCCGCCCCATCCCTGAACCCGTCCCGCGAAGCATTGGCCATGTCTACGGCGGTGTAGAGCGGAGTAGGGCCGCCGCGCAGGTGTTCGATCATCTTGGCCTGCTGAGCGACTGTGGCTTCCAGGGCGATAATTTTGTAGTCCTGCTCG
|
sequence TAGGATTGGATTATTTGGAAAGGGTTTTTGCGCGCTTCTTCGACCACGCAATCACGTCAAGCACCGCGCTTTTGCTGAACACGCTGCGCTGCTTGTAGTAGTCGATCGAGTCCCGGGCTACGCTGAAGCAAATGCCCTCTGGATACTTCAGCTTGCGCAGTTCGTCGTGAACGTTTTTTCGATGAACTCAAACGGAGTCATATCGCCACCCATTCGTTTTTGCCGTTGTAGAAGCCTCGCCAyTCCCCGAGCCTGAACACCAAGGTCCCAGGGtGCAGAGCCATGCGCGAGAGATTGGCCAGCCATCGAGCCGGAAGCTTTTCTTGATCGCGCTCAGACGGCGCTTGCGGATTCGCGTTCGTGACAGATCGATCCGCCGGATTCGGATTAGAGCCATGTTGAATTCCAGyCAGGCGCCGCCCTCCGGGTTCCGGATGCAGCAGGTTGGATGGGGTTACTGCTTCGGCGCTTTCGGGAAGAACGCAGGGCGTGGGCCGCCGCGCTTCGATTTTGGATAGTCGATTTCGAACTTGGTGAGGATGCGAGTGAAGGCTGTAAAAGAGATTCCGGCCTTTTCCATAGCCTGGTTTCGCGTCAAGCCAAGCTCCTTGAACGCCTTGATGCGTGCTGCGTCTTGCGCATCTTTTGCTTCATCGACAGTGGCCGGTTTCAGATTCTTGCGCGCATAATAGGATGCTGACTGAAAACTGAATCCTCCTTCTTTGGCCAGAGAA
lsequence TAGGATTGGATTATTTGGAAAGGGTTTTTGCGCGCTTCTTCGACCACGCAATCACGTCAAGCACCGCGCTTTTGCTGAACACGCTGCGCTGCTTGTAGTAGTCGATCGAGTCCCGGGCTACGCTGAAGCAAATGCCCTCTGGATACTTCAGCTTGCGCAGTTCGTCGTGAACGTTTTTTCGATGAACTCAAACGGAGTCATATCGCCACCCATTCGTTTTTGCCGTTGTAGAAGCCTCGCCAyTCCCCGAGCCTGAACACCAAGGTCCCAGGG-tGCAGAGCCATGCGCGAGAGATTGGCCAGCCATCGAGCCGGAAGCTTTTCTTGATCGCGCTCAGACGGCGCTTGCGGATTCGCGTTCGTGACAGATCGATCCGCCGGATTCGGATTAGAGCCATGTTGAATTCCAGyCAGGCGCCGCCCTCCGGGTTCCGGATGCAGCAGGTTGGATGGGGTTACTGCTTCGGCGCTTTCGGGAAGAACGCAGGGCGTGGGCCGCCGCGCTTCGATTTTGGATAGTCGATTTCGAACTTGGTGAGGATGCGAGTGAAGGCTGTAAAAGAGATTCCGGCCTTTTCCATAGCCTGGTTTCGCGTCAAGCCAAGCTCCTTGAACGCCTTGATGCGTGCTGCGTCTTGCGCATCTTTTGCTTCATCGACAGTGGCCGGTTTCAGATTCTTGCGCGCATAATAGGATGCTGACTGAAAACTGAATCCTCCTTCTTTGGCCAGAGAA
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090903030D030303030303030303030303030303030303030303030303030303030303030303030303030303030303160303030303030303030303030303030303030303030303030303030303030D0303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030316030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030305050505050505050505050505050505050505050505050505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 17
seq_id
com_name
type
method asmg
ed_status
redundancy 1.43
perc_N 0.41
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU1_RFPERU_001_E04.x01.phd.1
asm_lend 1
asm_rend 510
seq_lend 1
seq_rend 511
best 0
comment
db sdsu
offset 0
lsequence TAGGATTGGATTATTTGGAAAGGGTTTTTGCGCGCTTCTTCGACCACGCAATCACGTCAAGCACCGCGCTTTTGCTGAACACGCTGCGCTGCTTGTAGTAGTCGATCGAGTCCCGGGCTACGCTGAAGCAAATGCCCTCTGGATACTTCAGCTTGCGCAGTTCGTCGTGAACGTTTTTTCGATGAACTCAAACGGAGTCATATCGCCACCCATTCGTTTTTGCCGTTGTAGAAGCCTCGCCATTCCCCGAGCCTGAACACCAAGGTCCCAGGGGTGCAGAGCCATGCGCGAGAGATTGGCCAGCCATCGAGCCGGAAGCTTTTCTTGATCGCGCTCAGACGGCGCTTGCGGATTCGCGTTCGTGACAGATCGATCCGCCGGATTCGGATTAGAGCCATGTTGAATTCCAGTCAGGCGCCGCCCTCCGGGTTCCGGATGCAGCAGGTTGGATGGGGTTACTGCTTCGGCGCTTTCGGGAAGAACGCAGGGCGTGGGCCGCCGCGCTTCGATT
seq_name SDSU_RFPERU_006_E05.x01.phd.1
asm_lend 198
asm_rend 734
seq_lend 3
seq_rend 538
best 0
comment
db sdsu
offset 197
lsequence TC-TATCGCCACCCATTCGTTTTTGCCGTTGTAGAAGCCTCGCCACTCCCCGAGCCTGAACACCAAGGTCCCAGGG-TGCAGAGCCATGCGCGAGAGATTGGCCAGCCATCGAGCCGGAAGCTTTTCTTGATCGCGCTCAGACGGCGCTTGCGGATTCGCGTTCGTGACAGATCGATCCGCCGGATTCGGATTAGAGCCATGTTGAATTCCAGCCAGGCGCCGCCCTCCGGGTTCCGGATGCAGCAGGTTGGATGGGGTTACTGCTTCGGCGCTTTCGGGAAGAACGCAGGGCGTGGGCCGCCGCGCTTCGATTTTGGATAGTCGATTTCGAACTTGGTGAGGATGCGAGTGAAGGCTGTAAAAGAGATTCCGGCCTTTTCCATAGCCTGGTTTCGCGTCAAGCCAAGCTCCTTGAACGCCTTGATGCGTGCTGCGTCTTGCGCATCTTTTGCTTCATCGACAGTGGCCGGTTTCAGATTCTTGCGCGCATAATAGGATGCTGACTGAAAACTGAATCCTCCTTCTTTGGCCAGAGAA
|
sequence TTTCCGTTATCGCTCGTAGCAGTGAGCCGATCGTGAAATCGACAAGGCCGGCGGCCCGACCCTGGATCGCTGTTACTTGATCTCGTACGAGAGTGGTGAAGTCTTTGACGTTGAGAGATGCCATATCAGCGATTTACCTCGAACGAAAGCGTCACCGGCTCACCAAGCGGCGAATCGGTGTAGCTGATATTGACGGAGATGGTGTCGTTGGAAGGAGTGACAGAAATCACTGGCGCTGGCTTCTTTGCCACGCAGTCCTCAAGCAGGATCTGTCCCCTGATGTTCGCGATGATTTCCGGAACGTTTGCCAGGGCGCCGACATATCGGCCAAGCCCAGCCCCATATTCAGGGTGGAAAAGATAATCACCAGGGTTGGTGATAgCCTGCGTAGAATTCGTTGCTTGCCTCTTTcGATACCCTCGACCGGCGACAAGCTCCCGGCCGGGGACAGGGAAAGATCATCTCCAGGGTAGTGAGTTAGGTCTTTCATGGCACAGGCACCGAAGAATCCCGCCACCAGTAGTGACGCCGCTGGTGCGGTGGGTTTTGAGACTGATCGTGTCGGCTTTGACGTCGCCGCCGGTGACGACTACGCCAGTGCTATCTGTAACGGTCAGCGTGTGATCCATCGTTACGGGGCCGCCAGTAAAATGGTGCGCCGGCGCGTCGTAGTTGATTGCCACCCCCrAATGAAGCGATACGGTGCCGTCCGTGTTGAACTTGAGCAGCGCGCCAGATTTGTGAACCATCCrGATCTCGCCAGAAGGAACCGGCGTAGCCAGATTCACGCTGTTGGTGTGCCGCGCAGTGACCCTTCCACTATTGGGATCGAAGGAATCGAATTCGACGGTTACCTCATCCCCGACCTGTGGACCGATCTGCACGCCCCAGCCATTCCCAACACCTGGGCAATCCAGCTTCAACCAGTTGGTTTCTCATCCTTCCGGCTGGATTGCGACCTTCACAACGCCGTTAACTGGGTCGTAGCTGGTGATCGTTCCAGAGCTGCGACCCAGTTGCATCGGTAGTTTGGGTTTGGTGATACGCGTTCGTCAGTTGTTGAATGCTCACGGCTGCACCATTGAGTTTGGATTGTGGTTTTTTGCCGTCAGGCTCATCGGTGTAGCCGGATTCGAAGCTCAGCGACCGGCGCACAGAGTCGACGTAATAAAGTTGGTCGAATCCAGAGCCAGTCCCCTCGACGCGAACAATGGTGTTCGGCATCAGCGAGTTGTCGCCCGGAAGCGATCCAGACATGCGCATTTCATGATCGGTGATTTGTTTGTGGATCTTCTGCGCCAGTTGTTGCGCCGCGTACTGGTCCAAGCCGGTGCGCTTGATCTCGTAGATCTGCCGCTTTGCAGTTGCCTGCCCGGGCGCAATACCCTTAGCTGAACT
lsequence TTTCCGTTATCGCTCGTAGCAGTGAGCCGATCGTGAAATCGACAAGGCCGGCGGCCCGACCCTGGATCGCTGTTACTTGATCTCGTACGAGAGTGGTGAAGTCTTTGACGTTGAGAGATGCCATATCAGCGATTTACCTCGAACGAAAGCGTCACCGGCTCACCAAGCGGCGAATCGGTGTAGCTGATATTGACGGAGATGGTGTCGTTGGAAGGAGTGACAGAAATCACTGGCGCTGGCTTCTTTGCCACGCAGTCCTCAAGCAGGATCTGTCCCCTGATGTTCGCGATGATTTCCGGAACGTTTGCCAGGGCGCCGACATATCGGCCAAGCCCAGCCCCATATTCAGGGTGGAAAAGATAATCACCAGGGTTGGTGATA-gCCTGCGTAGAATTCGTTGCTTGCCTCTTT-cGATACCCTCGACCGGCGACAA-GCTCCCGGCCGGGGACAGGGAAAGATCATCTCCAGGGTAGTGAGTTAGGTCTTTCATGGCACAGGCACCGAAGAATCCCGCCACCAGTAGTGACGCCGCTGGTGCGGTGGGTTTTGAGACTGATCGTGTCGGCTTTGACGTCGCCGCCGGTGACGACTACGCCAGTGCTATCTGTAACGGTCAGCGTGTGATCCATCGTTACGGGGCCGCCAGTAAAATGGTGCGCCGGCGCGTCGTAGTTGATTGCCACCCCCrAATGAAGCGATACGGTGCCGTCCGTGTTGAACTTGAGCAGCGCGCCAGATTTGTGAACCATCCrGATCTCGCCAGAAGGAACCGGCGTAGCCAGATTCACGCTGTTGGTGTGCCGCGCAGTGACCCTTCCACTATTGGGATCGAAGGAATCGAATTCGACGGTTACCTCATCCCCGACCTGTGGACCGATCTGCACGCCCCAGCCATTCCCAACACCTGGGCAATCCAGCTTCAACCAGTTGGTTTCTCATCCTTCCGGCTGGATTGCGACCTTCACAACGCCGTTAACTGGGTCGTAGCTGGTGATCGTTCCAGAGCTGCGACCCAGTTGCATCGGTAGTTTGGGTTTGGTGATACGCGTTCGTCAGTTGTTGAATGCTCACGGCTGCACCATTGAGTTTGGATTGTGGTTTTTTGCCGTCAGGCTCATCGGTGTAGCCGGATTCGAAGCTCAGCGACCGGCGCACAGAGTCGACGTAATAAAGTTGGTCGAATCCAGAGCCAGTCCCCTCGACGCGAACAATGGTGTTCGGCATCAGCGAGTTGTCGCCCGGAAGCGATCCAGACATGCGCATTTCATGATCGGTGATTTGTTTGTGGATCTTCTGCGCCAGTTGTTGCGCCGCGTACTGGTCCAAGCCGGTGCGCTTGATCTCGTAGATCTGCCGCTTTGCAGTTGCCTGCCCGGGCGCAATACCCTTAGCTGAACT
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B050505050505050505050505050505050505050505050505050505050505050505050505050505050303030303030303030D0303030303030303030303030303030303030303030303030303030303030D030303030303030303030303030303030303030303030D03090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090903030303030303030303030303030303030303030303030303050505050505050505050505050505030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303031603030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030316030303030303030303030303030303030303030303030D0303090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B04040404040404040404040E04040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040E0404040404040E0404040404040404040404040404040B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 36
seq_id
com_name
type
method asmg
ed_status
redundancy 1.32
perc_N 0.29
seq# 4
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_002_C12.x01.phd.1
asm_lend 1
asm_rend 434
seq_lend 1
seq_rend 437
best 0
comment
db sdsu
offset 0
lsequence TTTCCGTTATCGCTCGTAGCAGTGAGCCGATCGTGAAATCGACAAGGCCGGCGGCCCGACCCTGGATCGCTGTTACTTGATCTCGTACGAGAGTGGTGAAGTCTTTGACGTTGAGAGATGCCATATCAGCGATTTACCTCGAACGAAAGCGTCACCGGCTCACCAAGCGGCGAATCGGTGTAGCTGATATTGACGGAGATGGTGTCGTTGGAAGGAGTGACAGAAATCACTGGCGCTGGCTTCTTTGCCACGCAGTCCTCAAGCAGGATCTGTCCCCTGATGTTCGCGATGATTTCCGGAACGTTTGCCAGGGCGCCGACATATCGGCCAAGCCCAGCCCCATATTCAGGGTGGAAAAGATAATCACCAGGGTTGGTGATAAGCCTGCGTAGAATTCGTTGCTTGCCTCTTTTCGATACCCTCGACCGGCGACAAAG
seq_name SDSU1_RFPERU_001_B03.x01.phd.1
asm_lend 333
asm_rend 777
seq_lend 1
seq_rend 445
best 0
comment
db sdsu
offset 332
lsequence CCCAGCCCCATATTCAGGGTGGAAAAGATAATCACCAGGGTTGGTGATA-GCCTGCGTAGAATTCGTTGCTTGCCTCTTT-CGATACCCTCGACCGGCGACAA-GCTCCCGGCCGGGGACAGGGAAAGATCATCTCCAGGGTAGTGAGTTAGGTCTTTCATGGCACAGGCACCGAAGAATCCCGCCACCAGTAGTGACGCCGCTGGTGCGGTGGGTTTTGAGACTGATCGTGTCGGCTTTGACGTCGCCGCCGGTGACGACTACGCCAGTGCTATCTGTAACGGTCAGCGTGTGATCCATCGTTACGGGGCCGCCAGTAAAATGGTGCGCCGGCGCGTCGTAGTTGATTGCCACCCCCGAATGAAGCGATACGGTGCCGTCCGTGTTGAACTTGAGCAGCGCGCCAGATTTGTGAACCATCCGGATCTCGCCAGAAGGAACCGGCATA
seq_name SDSU_RFPERU_007_F06.x01.phd.1
asm_lend 530
asm_rend 1029
seq_lend 1
seq_rend 498
best 0
comment
db sdsu
offset 532
lsequence CGCTGGTGCGGTGGGTTTTGAGACTGATCGTGTCGGCTTTGACGTCGCCGCCGGTGACGACTACGCCAGTGCTATCTGTAACGGTCAGCGTGTGATCCATCGTTACGGGGCCGCCAGTAAAATGGTGCGCCGGCGCGTCGTAGTTGATTGCCACCCCCAAATGAAGCGATACGGTGCCGTCCGTGTTGAACTTGAGCAGCGCGCCAGATTTGTGAACCATCCAGATCTCGCCAGAAGGAACCGGCGTAGCCAGATTCACGCTGTTGGTGTGCCGCGCAGTGACCCTTCCACTATTGGGATCGAAGGAATCGAATTCGACGGTTACCTCATCCCCGACCTGTGGACCGATCTGCACGCCCCAGCCATTCCCAACACCTGGGCAATCCAGCTTCAACCAGTTGGTTTCTCATCCTTCCGGCTGGATTGCGACCTTCACAACGCCGTTAACTGGGTCGTAGCTGGTGATCGTTCCAGAGC-GCGACC-AGTTGCATCGGTAGT
seq_name SDSU_RFPERU_013_B05.x01.phd.1
asm_lend 927
asm_rend 1398
seq_lend 472
seq_rend 1
best 0
comment
db sdsu
offset 929
lsequence GTTGGTTTCTCTTCCTTCCGGCTGGATTGCGACCTTCACAACGCCGTTAACTGGGTCGTAGCTGGTGATCGTTCCAGAGCTGCGACCCAGTTGCATCGGTAGTTTGGGTTTGGTGATACGCGTTCGTCAGTTGTTGAATGCTCACGGCTGCACCATTGAGTTTGGATTGTGGTTTTTTGCCGTCAGGCTCATCGGTGTAGCCGGATTCGAAGCTCAGCGACCGGCGCACAGAGTCGACGTAATAAAGTTGGTCGAATCCAGAGCCAGTCCCCTCGACGCGAACAATGGTGTTCGGCATCAGCGAGTTGTCGCCCGGAAGCGATCCAGACATGCGCATTTCATGATCGGTGATTTGTTTGTGGATCTTCTGCGCCAGTTGTTGCGCCGCGTACTGGTCCAAGCCGGTGCGCTTGATCTCGTAGATCTGCCGCTTTGCAGTTGCCTGCCCGGGCGCAATACCCTTAGCTGAACT
|
sequence CGATGCTGTACGGCTGTTGCGACAGATTGCGCTGGGTCGATACCGCGTTGGTGATCGGCTTGTTCAGCGGGCTCTGGTTCGGCGACAGCGCGGCGATCTTGGCGGCTGCGAAGGTTGCCGGCGCAATCATGCGCTGCTGACCGTTGACCTGGTCCTGCCAGTACACCCAGTCGCCCACCATGACCTTCAGCGCGTAGCTGTCACAGCCGGCTGTGGTCAGCGCAGTGGCGACGGTGGTGTAGGAGGCGCCAGCAACACCTTGGGTGATCATGTAGCAGCCTTCTGACAGGCCGTAGGTCAGCATGGTCGGCCACTGGGTACCAGTCAGTCGGGTCAACCGAGATTCGCAsCTGAGCGCCACTGCCGCGCAGAGCGTACATGCCCTTGCGGGTCGCGCCGGTAACACCATCCACGCCGATCAGAACTGCGTCGGTGATGGTGGTGTTACCCGAGGTGCCAGTGGTGAAGGCGACGGTCTGGGTGCTGGCCACAGGCGCCAGAGTGGTCGCGCCAACGGTGGCGATGACCAGTTGCGATGGGCCACGGATACCTGACTGCCCGTTGTTCACGGCGCTGACGATGTTCTGCCACAGCGCCAGGCCAGAGCCGGTGATGTTGTCGAACACTTCGGGCGCAACGCCAGGGAGCGAGACGGTCAGCTTCCAGCTCGAAGCAGCGGAGCCAGTAGCCAGGGCGGCGCTGAGCGAGTTGCCGAGCGTGCCGGTGTAGAACGCGGTCAGCGTGGCGCCGGTGGCGGCGGCAGTGTCCTTCAGCGCACTGGTCGCGGCGGTGTCGGTGCCGTCAGTGACGCGCACGGCGCGGATGTTCGAGGCGCCGCCCTGGATTGATACCGCCAGCGCGGTGCACAGGTCGTACTTGCGCACGGTCyGAGTGCCGAACTTCTGCGATGCGTCACCTGGCGAGCCGATAaGCGTGGCGCTGTTCACCGGCCCCCAGTCAGCAATGCCGACGATGCCGAGAATGTCAGTCGGGACGCCATTGATGTAGCGGGTCTTGGGCGCCACTATTTGTATGTACAAATCTGGCGCAGATAAAGCCGCCGTATTCAAATAACCAGCAGGATAGATAGGCATCACGCCTCCAGAATGAAAAAGGCCACCGATTAGGTGGCCTTTGTTGTGTTCGGCTGGCTGTTAGAGCAGCAGCCCGTTTTCCCGCGCAAACGCGAATGGGTCCTTGTCATGCTTCCTGCAATTGCAGGTAGGACAAAGAATTTGCAGGTTGGATTTGTCGTTCGATCCGCCCTTTGCAAGCGGGAACACGTGGTCAACGTGATACCCATCCCTTATGGATATAGTGCACATGGCGCATTTCCAGCGCTGAGCAGCCAGCAAAAATTTTATGTCGTCGCCGGTGTGTGAGCCGACAGCATTTTTCTTGCGAGCCTTGTATGTCCGCGAGAGTGAACGAACTTGCTCCTTGTTGGCTGTCTTCCAGAGCTTTTGAGTAAGCGCACAGAGATCCTTGTTTCTTGATCTCCACTCTCTGGTTGCGGAAAT
lsequence CGATGCTGTACGGCTGTTGCGACAGATTGCGCTGGGTCGATACCGCGTTGGTGATCGGCTTGTTCAGCGGGCTCTGGTTCGGCGACAGCGCGGCGATCTTGGCGGCTGCGAAGGTTGCCGGCGCAATCATGCGCTGCTGACCGTTGACCTGGTCCTGCCAGTACACCCAGTCGCCCACCATGACCTTCAGCGCGTAGCTGTCACAGCCGGCTGTGGTCAGCGCAGTGGCGACGGTGGTGTAGGAGGCGCCAGCAACACCTTGGGTGATCATGTAGCAGCCTTCTGACAGGCCGTAGGTCAGCATGGTCGGCCACTGGGTACCAGTCAGTCGGGTCAACCGAGATTCG-CAsCTGAGCGCCACTGCCGCGCAGAGCGTACATGCCCTTGCGGGTCGCGCCGGTAACACCATCCACGCCGATCAGAACTGCGTCGGTGATGGTGGTGTTACCCGAGGTGCCAGTGGTGAAGGCGACGGTCTGGGTGCTGGCCACAGGCGCCAGAGTGGTCGCGCCAACGGTGGCGATGACCAGTTGCGATGGGCCACGGATACCTGACTGCCCGTTGTTCACGGCGCTGACGATGTTCTGCCACAGCGCCAGGCCAGAGCCGGTGATGTTGTCGAACACTTCGGGCGCAACGCCAGGGAGCGAGACGGTCAGCTTCCAGCTCGAAGCAGCGGAGCCAGTAGCCAGGGCGGCGCTGAGCGAGTTGCCGAGCGTGCCGGTGTAGAACGCGGTCAGCGTGGCGCCGGTGGCGGCGGCAGTGTCCTTCAGCGCACTGGTCGCGGCGGTGTCGGTGCCGTCAGTGACGCGCACGGCGCGGATGTTCGAGGCGCCGCCCTGGATTGATACCGCCAGCGCGGTGCACAGGTCGTACTTGCGCACGGTCyGAGTGCCGAACTTCTGCGATGCGTCACCTGGCGAGCCGATAaGCGTGGCGCTGTTCACCGGCCCCCAGTCAGCAATGCCGACGATGCCGAGAATGTCAGTCGGGACGCCATTGATGTAGCGGGTCTTGGGCGCCACTATTTGTATGTACAAATCTGGCGCAGATAAAGCCGCCGTATTCAAATAACCAGCAGGATAGATAGGCATCACGCCTCCAGAATGAAAAAGGCCACCGATTAGGTGGCCTTTGTTGTGTTCGGCTGGCTGTTAGAGCAGCAGCCCGTTTTCCCGCGCAAACGCGAATGGGTCCTTGTCATGCTTCCTGCAATTGCAGGTAGGACAAAGAATTTGCAGGTTGGATTTGTCGTTCGATCCGCCCTTTGCAAGCGGGAACACGTGGTCAACGTGATACCCATCCCTTATGGATATAGTGCACATGGCGCATTTCCAGCGCTGAGCAGCCAGCAAAAATTTTATGTCGTCGCCGGTGTGTGAGCCGACAGCATTTTTCTTGCGAGCCTTGTATGTCCGCGAGAGTGAACGAACTTGCTCCTTGTTGGCTGTCTTCCAGAGCTTTTGAGTAAGCGCACAGAGATCCTTGTTTCTTGATCTCCACTCTCTGGTTGCGGAAAT
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0505050505050505050E0505160505050505050505050505050505050505050505050505050505050303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0404040404040404041604040404040404040404040404040404040404040404040404040404040404040404040404040404040E0404040404040404040B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 93
seq_id
com_name
type
method asmg
ed_status
redundancy 1.11
perc_N 0.20
seq# 3
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_010_C09.x01.phd.1
asm_lend 1
asm_rend 442
seq_lend 1
seq_rend 442
best 0
comment
db sdsu
offset 0
lsequence CGATGCTGTACGGCTGTTGCGACAGATTGCGCTGGGTCGATACCGCGTTGGTGATCGGCTTGTTCAGCGGGCTCTGGTTCGGCGACAGCGCGGCGATCTTGGCGGCTGCGAAGGTTGCCGGCGCAATCATGCGCTGCTGACCGTTGACCTGGTCCTGCCAGTACACCCAGTCGCCCACCATGACCTTCAGCGCGTAGCTGTCACAGCCGGCTGTGGTCAGCGCAGTGGCGACGGTGGTGTAGGAGGCGCCAGCAACACCTTGGGTGATCATGTAGCAGCCTTCTGACAGGCCGTAGGTCAGCATGGTCGGCCACTGGGTACCAGTCAGTCGGGTCAACCGAGATTCG-CAGCTGAGCGCCACTGCCGCGCAGAGCGTACATGCCCTTGCGGGTCGCGCCGGTAACACCATCCACGCCGATCAGAACTGCGTCGGTGATGGTGG
seq_name SDSU_RFPERU_002_H12.x01.phd.1
asm_lend 339
asm_rend 940
seq_lend 1
seq_rend 602
best 0
comment
db sdsu
offset 338
lsequence CGAGATTCGCCACCTGAGCGCCACTGCCGCGCAGAGCGTACATGCCCTTGCGGGTCGCGCCGGTAACACCATCCACGCCGATCAGAACTGCGTCGGTGATGGTGGTGTTACCCGAGGTGCCAGTGGTGAAGGCGACGGTCTGGGTGCTGGCCACAGGCGCCAGAGTGGTCGCGCCAACGGTGGCGATGACCAGTTGCGATGGGCCACGGATACCTGACTGCCCGTTGTTCACGGCGCTGACGATGTTCTGCCACAGCGCCAGGCCAGAGCCGGTGATGTTGTCGAACACTTCGGGCGCAACGCCAGGGAGCGAGACGGTCAGCTTCCAGCTCGAAGCAGCGGAGCCAGTAGCCAGGGCGGCGCTGAGCGAGTTGCCGAGCGTGCCGGTGTAGAACGCGGTCAGCGTGGCGCCGGTGGCGGCGGCAGTGTCCTTCAGCGCACTGGTCGCGGCGGTGTCGGTGCCGTCAGTGACGCGCACGGCGCGGATGTTCGAGGCGCCGCCCTGGATTGATACCGCCAGCGCGGTGCACAGGTCGTACTTGCGCACGGTCCGAGTGCCGAACTTCTGCGATGCGTCACCTGGCGAGCCGATA-GCGTGGCGC
seq_name SDSU_RFPERU_009_E07.x01.phd.1
asm_lend 880
asm_rend 1520
seq_lend 641
seq_rend 1
best 0
comment
db sdsu
offset 880
lsequence CGCACGGTCTGAGTGCCGAACTTCTGCGATGCGTCACCTGGCGAGCCGATAAGCGTGGCGCTGTTCACCGGCCCCCAGTCAGCAATGCCGACGATGCCGAGAATGTCAGTCGGGACGCCATTGATGTAGCGGGTCTTGGGCGCCACTATTTGTATGTACAAATCTGGCGCAGATAAAGCCGCCGTATTCAAATAACCAGCAGGATAGATAGGCATCACGCCTCCAGAATGAAAAAGGCCACCGATTAGGTGGCCTTTGTTGTGTTCGGCTGGCTGTTAGAGCAGCAGCCCGTTTTCCCGCGCAAACGCGAATGGGTCCTTGTCATGCTTCCTGCAATTGCAGGTAGGACAAAGAATTTGCAGGTTGGATTTGTCGTTCGATCCGCCCTTTGCAAGCGGGAACACGTGGTCAACGTGATACCCATCCCTTATGGATATAGTGCACATGGCGCATTTCCAGCGCTGAGCAGCCAGCAAAAATTTTATGTCGTCGCCGGTGTGTGAGCCGACAGCATTTTTCTTGCGAGCCTTGTATGTCCGCGAGAGTGAACGAACTTGCTCCTTGTTGGCTGTCTTCCAGAGCTTTTGAGTAAGCGCACAGAGATCCTTGTTTCTTGATCTCCACTCTCTGGTTGCGGAAAT
|
sequence CCGTTCAAGCAGGAGATCAGCGCCTGCCATCTGCAACAGAGCATGGGGCGTCAAACCTCTGCGGCGTAGATCCTATATTCACAGGGGAGCCAAAAGCATTTGACCAACTGAGGGGAAGTGCCTCGGTGCCAAATTCAGAGCCTCGCCATCGTGCGGGGCTTTTTTGTTTCCTTCTTCCACTGCTCCCCAGCAGTTTGGCCGCCAACTGACGGCCTTTTTTATTCCTGGAGTCACGCCATGGCCGAACCCGCGAGCACCACTGCCGCCGGTGTCCTGCTCGCGAAGTACGGCATCATCATCGCTGGCTTCGCTGGAGCAATCCTTTCGCTGACCTTCCTTCAnGGGCCTGACCCGCAAGCAGGCCATTTGGGCATTCTTCACCGGGTTCGGCTCTGCGATCTTCTGCACGCCGCTGGCGATCAGCTTCTTCAAGCTGGAGCCTGGTGGCGAAACTCAATACGGCGTCGCATTCCTGATCGGCCTGCTGGCCATGAACATCATTCCCCTGTTGAAGAaAGCAATGCCGGGAGTGTTTGGCGTCTCGGGAGGTGCaGTAATGCAAACCATCCTGCAAGTCCTTGACGCTTTCCTGTGTGtgCTGGTGGTGCTAGCCGCTGCTGAGTACCT
lsequence CCGTTCAAGCAGGAGATCAGCGCCTGCCATCTGCAACAGAGCATGGGGCGTCAAACCTCTGCGGCGTAGATCCTATATTCACAGGGGAGCCAAAAGCATTTGACCAACTGAGGGGAAGTGCCTCGGTGCCAAATTCAGAGCCTCGCCATCGTGCGGGGCTTTTTTGTTTCCTTCTTCCACTGCTCCCCAGCAGTTTGGCCGCCAACTGACGGCCTTTTTTATTCCTGGAGTCACGCCATGGCCGAACCCGCGAGCACCACTGCCGCCGGTGTCCTGCTCGCGAAGTACGGCATCATCATCGCTGGCTTCGCTGGAGCAATCCTTTCGCTGACCTTCCTTCAnGGGCCTGACCCGCAAGCAGGCCATTTGGGCATTCTTCACCGGGTTCGGCTCTGCGATCTTCTGCACGCCGCTGGCGATCAGCTTCTTCAAGCTGGAGCCTGGTGGCGAAACTCAATACGGCGTCGCATTCCTGATCGGCCTGCTGGCCATGAACATCATTCCCCTGTTGAAGA-aAGCAATGCCGGGAGTGTTTGGCGTCTCGGGAGGTGCaGTAATGCAAACCATCCTGCAAGTCCTTGACGCTTTCCTGTGTGtgCTGGTGGTGCTAGCCGCTGCTGAGTACCT
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B150B0B0B0B0B0B0B0B0B0B0B0B0B0B0B090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B04040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040E040404040404040404040404040402020202020202020202020202020202020202020202020D020202020202040404040404040404040404040404040404040404040404040404040404040404040404040E0E0404040B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 106
seq_id
com_name
type
method asmg
ed_status
redundancy 1.23
perc_N 0.80
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_006_E04.x01.phd.1
asm_lend 1
asm_rend 627
seq_lend 1
seq_rend 626
best 0
comment
db sdsu
offset 0
lsequence CCGTTCAAGCAGGAGATCAGCGCCTGCCATCTGCAACAGAGCATGGGGCGTCAAACCTCTGCGGCGTAGATCCTATATTCACAGGGGAGCCAAAAGCATTTGACCAACTGAGGGGAAGTGCCTCGGTGCCAAATTCAGAGCCTCGCCATCGTGCGGGGCTTTTTTGTTTCCTTCTTCCACTGCTCCCCAGCAGTTTGGCCGCCAACTGACGGCCTTTTTTATTCCTGGAGTCACGCCATGGCCGAACCCGCGAGCACCACTGCCGCCGGTGTCCTGCTCGCGAAGTACGGCATCATCATCGCTGGCTTCGCTGGAGCAATCCTTTCGCTGACCTTCCTTCANGGGCCTGACCCGCAAGCAGGCCATTTGGGCATTCTTCACCGGGTTCGGCTCTGCGATCTTCTGCACGCCGCTGGCGATCAGCTTCTTCAAGCTGGAGCCTGGTGGCGAAACTCAATACGGCGTCGCATTCCTGATCGGCCTGCTGGCCATGAACATCATTCCCCTGTTGAAGA-AAGCAATGCCGGGAGTGTTTGGCGTCTCGGGAGGTGC-GTAATGCAAACCATCCTGCAAGTCCTTGACGCTTTCCTGTGTGTGCTGGTGGTGCTAGCCGCTGCTGAGTACCT
seq_name SDSU_RFPERU_010_B05.x01.phd.1
asm_lend 460
asm_rend 601
seq_lend 141
seq_rend 1
best 0
comment
db sdsu
offset 459
lsequence CGGCGTCGCATTCCTGATCGGCCTGCTGGCCATGAACATCATTCCCCTGTTGAAGAGAAGCAATGCCGGGAGTGTTTGGCGTCTCGGGAGGTGCAGTAATGCAAACCATCCTGCAAGTCCTTGACGCTTTCCTGTGTG--CTG
|
sequence AGCGCCGATACACATGCTCAAACCGCGCATCGAAGTCTTCGATCAAGACGCTGAAGTAGTAGCCGTCCATGTTGAAGTTGAGCGGCTGACCGGCGTCACGCAGCGTCTCCAGCTCCGTGACGCGGTCACCAGCTGTCGCGCCAGTGATCCAGCCAGACCACTGGATGTTCTTGTAATCCAGACCGAGAACATCGACAACACGCTTGCCGCCTACCAGTTTGTGCACCACGAGCTTCTGTTTGGCGCCGATCGATACTGACTCTGGGACTTCCAGGCCGGTGAACTCGACATCTCCAACGATCAACCGCGTGGCAAACGGATCCCCGCCCGGAGCGAAGTTGTCCAGGAAGCTCGTAAAGCTCATCGTTTATCCCCTTGGATAGGCTGCGCTCGGGGTTCCTGGCATCAGCATGCTGCGGTTCGGATCGAAGCCCTGCGTCCCTGTCCGTGGCTTCGCGGCTTCCTTCGCCATCCGCTGGATTACCACGTCGCTGACTTGTTTGCCGTCGATGTACAGGTTGATGTTCTGTTGGCCATCGGCGCcAGACTTGCCCGGGACCGGAGCCACCAGCGGAGACCATGCTGGCTTTTTCTCCCCGCTTCCACGGAAATCATCGGCGAATGTAGGTTTTTGAGATCTGCATCGATGCTGGAAGAATCAGGTTTGCGCCAGCGATCAGCGTGTTGAAGATCGTCTGCCAGCCGGTCAAGAAGACCAGAGCAAATGACTTGAATGCGCCGCCGATATCGCCCTGAAAGAGTTTTACAAACCCGGTCTTCATGTCGTTCCACATGAGCTTCAATGCTCCGCTGATCTCCTTCCAGTTGTTCCATAGTAGGAAGGCCGCCGCCGCGATCGCCAGATCACTAGGCCAATTGGATTCATGAGGAGTGCACGGCCAAGATTGACCACAGTCATCACAAGATAAGTTCCCATACGCGCTATCCATGGGATCAGCGGTG
lsequence AGCGCCGATACACATGCTCAAACCGCGCATCGAAGTCTTCGATCAAGACGCTGAAGTAGTAGCCGTCCATGTTGAAGTTGAGCGGCTGACCGGCGTCACGCAGCGTCTCCAGCTCCGTGACGCGGTCACCAGCTGTCGCGCCAGTGATCCAGCCAGACCACTGGATGTTCTTGTAATCCAGACCGAGAACATCGACAACACGCTTGCCGCCTACCAGTTTGTGCACCACGAGCTTCTGTTTGGCGCCGATCGATACTGACTCTGGGACTTCCAGGCCGGTGAACTCGACATCTCCAACGATCAACCGCGTGGCAAACGGATCCCCGCCCGGAGCGAAGTTGTCCAGGAAGCTCGTAAAGCTCATCGTTTATCCCCTTGGATAGGCTGCGCTCGGGGTTCCTGGCATCAGCATGCTGCGGTTCGGATCGAAGCCCTGCGTCCCTGTCCGTGGCTTCGCGGCTTCCTTCGCCATCCGCTGGATTACCACGTCGCTGACTTGTTTGCCGTCGATGTACAGGTTGATGTTCTGTTGGCCATCGGCGCcAGACTTGCCCGGGACCGGAGCCACCAGCGGAGACCATGCTGGCTTTTTCTCCCCGCTTCCACGGAAATCATCGGCGAATGTAGGTTTTTGAGATCTGCATCGATGCTGGAAGAATCAGGTTTGCGCCAGCGATCAGCGTGTTGAAGATCGTCTGCCAGCCGGTCAAGAAGACCAGAGCAAATGACTTGAATGCGCCGCCGATATCGCCCTGAAAGAGTTTTACAAACCCGGTCTTCATGTCGTTCCACATGAGCTTCAATGCTCCGCTGATCTCCTTCCAGTTGTTCCATAGTAGGAAGGCCGCCGCCGCGATCGCCAGATCACTAGGCCAATTGGATTCATGAGGAGTGCACGGCCAAGATTGACCACAGTCATCACAAGATAAGTTCCCATACGCGCTATCCATGGGATCAGCGGTG
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B09090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B05050505050E0505050505050505050505050505050505050505050505050505050505050505050505030303030303030303030909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 144
seq_id
com_name
type
method asmg
ed_status
redundancy 1.05
perc_N 0.10
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_013_H05.x01.phd.1
asm_lend 1
asm_rend 589
seq_lend 1
seq_rend 589
best 0
comment
db sdsu
offset 0
lsequence AGCGCCGATACACATGCTCAAACCGCGCATCGAAGTCTTCGATCAAGACGCTGAAGTAGTAGCCGTCCATGTTGAAGTTGAGCGGCTGACCGGCGTCACGCAGCGTCTCCAGCTCCGTGACGCGGTCACCAGCTGTCGCGCCAGTGATCCAGCCAGACCACTGGATGTTCTTGTAATCCAGACCGAGAACATCGACAACACGCTTGCCGCCTACCAGTTTGTGCACCACGAGCTTCTGTTTGGCGCCGATCGATACTGACTCTGGGACTTCCAGGCCGGTGAACTCGACATCTCCAACGATCAACCGCGTGGCAAACGGATCCCCGCCCGGAGCGAAGTTGTCCAGGAAGCTCGTAAAGCTCATCGTTTATCCCCTTGGATAGGCTGCGCTCGGGGTTCCTGGCATCAGCATGCTGCGGTTCGGATCGAAGCCCTGCGTCCCTGTCCGTGGCTTCGCGGCTTCCTTCGCCATCCGCTGGATTACCACGTCGCTGACTTGTTTGCCGTCGATGTACAGGTTGATGTTCTGTTGGCCATCGGCGCCAGACTTGCCCGGGACCGGAGCCACCAGCGGAGACCATGCTGGCTT
seq_name SDSU_RFPERU_005_F02.x01.phd.1
asm_lend 539
asm_rend 963
seq_lend 1
seq_rend 424
best 0
comment
db sdsu
offset 538
lsequence GGCGC-AGACTTGCCCGGGACCGGAGCCACCAGCGGAGACCATGCTGGCTTTTTCTCCCCGCTTCCACGGAAATCATCGGCGAATGTAGGTTTTTGAGATCTGCATCGATGCTGGAAGAATCAGGTTTGCGCCAGCGATCAGCGTGTTGAAGATCGTCTGCCAGCCGGTCAAGAAGACCAGAGCAAATGACTTGAATGCGCCGCCGATATCGCCCTGAAAGAGTTTTACAAACCCGGTCTTCATGTCGTTCCACATGAGCTTCAATGCTCCGCTGATCTCCTTCCAGTTGTTCCATAGTAGGAAGGCCGCCGCCGCGATCGCCAGATCACTAGGCCAATTGGATTCATGAGGAGTGCACGGCCAAGATTGACCACAGTCATCACAAGATAAGTTCCCATACGCGCTATCCATGGGATCAGCGGTG
|
sequence TACGTTTCTGAATGCCGACTCGATACCCCTCAGGCCGGAGCGCGGCGGTCTTTTCGATATTGGCGATGACACGTTCAACGCCGCgAAGATCGGGTCTACTTGGCGCCCGTCCTTGAGCAGTTGATCGGCGTGGTTCCAGCCTTCACGTTCTTCAATGCGAGACATAGGGATGCTCCGAGTCAGTAGTTGGCGTACTGGGCGATCTCGTTCTGGCTGAGCTTGrGCTGCCGCACTTTCTGCCCATCGAGATGTTTGCGCAGCGCTTTCATGAAGAGGCAGATCAGCCTTGAGTTCGGCATACGCTTGACGCCGATCTTGTTGTCCGTGAGCTGATTCCTCAGTAATGArGCCAGCTCAAGAGTTGGCATCGGCTCACACATCGCGGCGAAGAACTCAGCGGTCATGAGGCGATTTTCTTTTGAGAAGTGGGCGAATACAGCGGCGCTTTGAGCTGCCGGGACAAGCTTGCGAAGGTGTGGTTTGAATCCATACAGAAGCCCTTCGTGAAGCAGTTTCTCGTTACTTCCACACGTCGCGATTACTTGGTCGTTGCGAATAGCGCTGCCGCGCTTGGCATTGTCGATCTTCCTTGCCTCCATAAGCGCAAGCAGTCGAGCGGCGCTTGCCATGTTCCCGACGTTTTTCAACTCTGGATTGGCGACCCCCAGCA
lsequence TACGTTTCTGAATGCCGACTCGATACCCCTCAGGCCGGAGCGCGGCGGTCTTTTCGATATTGGCGATGACACGTTCAACGCCGC-gAAGATCGGGTCTACTTGGCGCCCGTCCTTGAGCAGTTGATCGGCGTGGTTCCAGCCTTCACGTTCT-TCAATGCGAGACATAGGGATGCTCCGAGTCAGTAGTTGGCGTACTGGGCGATCTCGTTCTGGCTGAGCTTGrGCTGCCGCACTTTCTGCCCATCGAGATGTTTGCGCAGCGCTTTCATGAAGAGGCAGATCAGCCTTGAGTTCGGCATACGCTTGACGCCGATCTTGTTGTCCGTGAGCTGATTCCTCAGTAATGArGCCAGCTCAAGAGTTGGCATCGGCTCACACATCGCGGCGAAGAACTCAGCGGTCATGAGGCGATTTTCTTTTGAGAAGTGGGCGAATACAGCGGCGCTTTGAGCTGCCGGGACAAGCTTGCGAAGGTGTGGTTTGAATCCATACAGAAGCCCTTCGTGAAGCAGTTTCTCGTTACTTCCACACGTCGCGATTACTTGGTCGTTGCGAATAGCGCTGCCGCGCTTGGCATTGTCGATCTTCCTTGCCTCCATAAGCGCAAGCAGTCGAGCGGCGCTTGCCATGTTCCCGACGTTTTTCAACTCTGGATTGGCGACCCCCAGCA
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0505050505030303030303030303030303030303030303030303030303030303030303030303030303030303030303030314030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030803030303030303030303030303030303030303030303030303030303030303030303030303030303030303030308030303030303030303030303030303030303030303030303031603030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303160303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 148
seq_id
com_name
type
method asmg
ed_status
redundancy 1.96
perc_N 0.45
seq# 3
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_003_G09.x01.phd.1
asm_lend 1
asm_rend 513
seq_lend 1
seq_rend 514
best 0
comment
db sdsu
offset 0
lsequence TACGTTTCTGAATGCCGACTCGATACCCCTCAGGCCGGAGCGCGGCGGTCTTTTCGATATTGGCGATGACACGTTCAACGCCGCCGAAGATCGGGTCTACTTGGCGCCCGTCCTTGAGCAGTTGATCGGCGTGGTTCCAGCCTTCACGTTCT-TCAATGCGAGACATAGGGATGCTCCGAGTCAGTAGTTGGCGTACTGGGCGATCTCGTTCTGGCTGAGCTTGAGCTGCCGCACTTTCTGCCCATCGAGATGTTTGCGCAGCGCTTTCATGAAGAGGCAGATCAGCCTTGAGTTCGGCATACGCTTGACGCCGATCTTGTTGTCCGTGAGCTGATTCCTCAGTAATGAGGCCAGCTCAAGAGTTGGCATCGGCTCACACATCGCGGCGAAGAACTCAGCGGTCATGAGGCGATTTTCTTTTGAGAAGTGGGCGAATACAGCGGCGCTTTGAGCTGCCGGGACAAGCTTGCGAAGGTGTGGTTTGAATCCATACAGAAGCCCTTCGTGAAGCAGT
seq_name SDSU_RFPERU_002_A01.x01.phd.1
asm_lend 36
asm_rend 252
seq_lend 1
seq_rend 218
best 0
comment
db sdsu
offset 35
lsequence CGGAGCGCGGCGGTCTTTTCGATATTGGCGATGACACGTTCAACGCCGC-GAAGATCGGGTCTACTTGGCGCCCGTCCTTGAGCAGTTGATCGGCGTGGTTCCAGCCTTCACGTTCTATCAATGCGAGACATAGGGATGCTCCGAGTCAGTAGTTGGCGTACTAGGCGATCTCGTTCTGGCTGAGCTTGAGCTGCCGCACTTTCTGCCCATCGAGATGT
seq_name SDSU_RFPERU_002_D08.x01.phd.1
asm_lend 85
asm_rend 670
seq_lend 1
seq_rend 586
best 0
comment
db sdsu
offset 85
lsequence GAAGATCGGGTCTACTTGGCGCCCGTCCTTGAGCAGTTGATCGGCGTGGTTCCAGCCTTCACGTTCT-TCAATGCGAGACATAGGGATGCTCCGAGTCAGTAGTTGGCGTACTGGGCGATCTCGTTCTGGCTGAGCTTGGGCTGCCGCACTTTCTGCCCATCGAGATGTTTGCGCAGCGCTTTCATGAAGAGGCAGATCAGCCTTGAGTTCGGCATACGCTTGACGCCGATCTTGTTGTCCGTGAGCTGATTCCTCAGTAATGAAGCCAGCTCAAGAGTTGGCATCGGCTCACACATCGCGGCGAAGAACTCAGCGGTCATGAGGCGATTTTCTTTTGAGAAGTGGGCGAATACAGCGGCGCTTTGAGCTGCCGGGACAAGCTTGCGAAGGTGTGGTTTGAATCCATACAGAAGCCCTTCGTGAAGCAGTTTCTCGTTACTTCCACACGTCGCGATTACTTGGTCGTTGCGAATAGCGCTGCCGCGCTTGGCATTGTCGATCTTCCTTGCCTCCATAAGCGCAAGCAGTCGAGCGGCGCTTGCCATGTTCCCGACGTTTTTCAACTCTGGATTGGCGACCCCCAGCA
|
sequence CGCTACCTGCTGAAGATGATATTCAACGTCGCAATTGGCGAAGAAGACGATGACGGCAACGGCGCGTCAGGCGATGACTTCCGTAACGCAATAATTGCTGACCTGATCACAAAGGTCGCAGCAGCACCAGATAAGGCAGCGCTGCAAGAGGCTTGGCAATCGGGTCTCAAAGTACTCCACGCCGCCAGGGATTCCGCCGGCGCCGACGAGCTTCGCAACGCAGTAAACAAGCGGAAATCTGAACTGGAGGTCTAGACATGATCCTCATCGAATGCGAACAAGGGAGCCCGGCATGGCATCAAGCACGCGCCGGCTGCATAACTGCCAGCATGTTCGGCGTTGCGCGCACCAAGGTTGGCGGACTGGACGAAAAGCAGCAGATGTTCGTCGCTGCGGTACAGGCCGGCATGACAGAAAAAGAAGCCATGGCTGAGGCTGGCTACAAGTCTGCGCCGAAGGCCGAGTCGGTTAGGCTGGCACTCGCTGGCAAACCCGTTGGCCAGCCTTCGGATGCCGCTCTGAACTACGCCTTCACCGTGGCGGTCGAGCGCATCAGTGGCGAGTCGCTTGATGGTGGCTTCGAGACGTGGCAAATGAAGCGCGGTCATGAGCTTGAGCCAATGGCCCGGATGGAACATGAGCTGAAGTCCGGGCTCATGGTTCAGCGTGCCGGCTTTGTTACCACCGATGATGGGGCGTTCGGCGCGAGCGCTGACGGCCTGATCGGTGAG
lsequence CGCTACCTGCTGAAGATGATATTCAACGTCGCAATTGGCGAAGAAGACGATGACGGCAACGGCGCGTCAGGCGATGACTTCCGTAACGCAATAATTGCTGACCTGATCACAAAGGTCGCAGCAGCACCAGATAAGGCAGCGCTGCAAGAGGCTTGGCAATCGGGTCTCAAAGTACTCCACGCCGCCAGGGATTCCGCCGGCGCCGACGAGCTTCGCAACGCAGTAAACAAGCGGAAATCTGAACTGGAGGTCTAGACATGATCCTCATCGAATGCGAACAAGGGAGCCCGGCATGGCATCAAGCACGCGCCGGCTGCATAACTGCCAGCATGTTCGGCGTTGCGCGCACCAAGGTTGGCGGACTGGACGAAAAGCAGCAGATGTTCGTCGCTGCGGTACAGGCCGGCATGACAGAAAAAGAAGCCATGGCTGAGGCTGGCTACAAGTCTGCGCCGAAGGCCGAGTCGGTTAGGCTGGCACTCGCTGGCAAACCCGTTGGCCAGCCTTCGGATGCCGCTCTGAACTACGCCTTCACCGTGGCGGTCGAGCGCATCAGTGGCGAGTCGCTTGATGGTGGCTTCGAGACGTGGCAAATGAAGCGCGGTCATGAGCTTGAGCCAATGGCCCGGATGGAACATGAGCTGAAGTCCGGGCTCATGGTTCAGCGTGCCGGCTTTGTTACCACCGATGATGGGGCGTTCGGCGCGAGCGCTGACGGCCTGATCGGTGAG
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 185
seq_id
com_name
type
method asmg
ed_status
redundancy 1.44
perc_N 0.00
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_006_H08.x01.phd.1
asm_lend 1
asm_rend 484
seq_lend 1
seq_rend 484
best 0
comment
db sdsu
offset 0
lsequence CGCTACCTGCTGAAGATGATATTCAACGTCGCAATTGGCGAAGAAGACGATGACGGCAACGGCGCGTCAGGCGATGACTTCCGTAACGCAATAATTGCTGACCTGATCACAAAGGTCGCAGCAGCACCAGATAAGGCAGCGCTGCAAGAGGCTTGGCAATCGGGTCTCAAAGTACTCCACGCCGCCAGGGATTCCGCCGGCGCCGACGAGCTTCGCAACGCAGTAAACAAGCGGAAATCTGAACTGGAGGTCTAGACATGATCCTCATCGAATGCGAACAAGGGAGCCCGGCATGGCATCAAGCACGCGCCGGCTGCATAACTGCCAGCATGTTCGGCGTTGCGCGCACCAAGGTTGGCGGACTGGACGAAAAGCAGCAGATGTTCGTCGCTGCGGTACAGGCCGGCATGACAGAAAAAGAAGCCATGGCTGAGGCTGGCTACAAGTCTGCGCCGAAGGCCGAGTCGGTTAGGCTGGCACTCGC
seq_name SDSU_RFPERU_008_B02.x01.phd.1
asm_lend 167
asm_rend 731
seq_lend 1
seq_rend 565
best 0
comment
db sdsu
offset 166
lsequence TCAAAGTACTCCACGCCGCCAGGGATTCCGCCGGCGCCGACGAGCTTCGCAACGCAGTAAACAAGCGGAAATCTGAACTGGAGGTCTAGACATGATCCTCATCGAATGCGAACAAGGGAGCCCGGCATGGCATCAAGCACGCGCCGGCTGCATAACTGCCAGCATGTTCGGCGTTGCGCGCACCAAGGTTGGCGGACTGGACGAAAAGCAGCAGATGTTCGTCGCTGCGGTACAGGCCGGCATGACAGAAAAAGAAGCCATGGCTGAGGCTGGCTACAAGTCTGCGCCGAAGGCCGAGTCGGTTAGGCTGGCACTCGCTGGCAAACCCGTTGGCCAGCCTTCGGATGCCGCTCTGAACTACGCCTTCACCGTGGCGGTCGAGCGCATCAGTGGCGAGTCGCTTGATGGTGGCTTCGAGACGTGGCAAATGAAGCGCGGTCATGAGCTTGAGCCAATGGCCCGGATGGAACATGAGCTGAAGTCCGGGCTCATGGTTCAGCGTGCCGGCTTTGTTACCACCGATGATGGGGCGTTCGGCGCGAGCGCTGACGGCCTGATCGGTGAG
|
sequence GTGGTCGCCGGATACTTGCTTGTCGAGTGCGCTCATGCTGCTTCCCCTTTCGCTGATTCAAGATGTGTGACGCATGCGGCCTTGCGGCCTTTTCGTTCTCGCCGGAGTAGAGAATTTTCGAGGCAGGCGCTGGTGTGCGGGCGATGAAAGCGTTGGTCGACTGCATCCGGTACCGGCTGACCAGGTAGCCTTCCGCGGATGCGAGGCAGTTGGTGCTGATGCCTTTCCAGTTCATGGCCGAATCCCCCGCCGAGCTCTATCCTTGCGCCACAAATAGCGGCAGAGTTCGAGCAGGCCGCCCCCGAGTACCAACAGAAATCCGAAGTAGAAGTGGACGAGATTCATGCTGCTGCTCTCCTGAGTTCACGGGTCTTGGCGCGGTATTCGGCGGTGATGGCCTTGAGGTCTTCGATGGTGTAGCGCTTGGGTTCGTGGGGGCCTTCCAGCCACTCGACAAGATCGGTGCCGATGCGCTTCACCAGTTCGATGCGGTATTCAACGATTGCCCCGGACTTCCCCATGTyGCAGTTGCGATTGCACTGCAGATGGACGTTCAGCGGCTCGAAACGCAACTCTGGGCACGACTTGACGGTGCGGTAGTGGCCGGCTGCGTACTGGACGTTCGCGGTCGTCCCGCATGAGATGCATGGCTTGCCGGCGTCTCTGGCGCGGATCCAGGCGTTGAACGCTATCTGGCAGTCACGCATGTACCGGCCCTTCGTCTTAACGCGCTCCTTGGCCGCTCTCAGCTCATTGCGGCTACATCGGCAAGGGCTTTGCGAGCCTTGTCGGCGTTCTCAGGACTTGATCGCCAGTCCGCAGGCAGGACTGCAGACCTTCTGACCGAGGCGCTGAGGGTCGAATGAGGCCATGCACTCTGGGTTGGCGCAGATCTTGGGTTTGCGGGGTTTGGACGGAAGAGTCATTCCTCGGCCCCTCCGCACGCTTGCGAGATATGCATTCCGCGCCCGCTCGTTGCGCGCCTTTTGCCGGCGCTGGTTGACCGGCCCCATCAAGC
lsequence GTGGTCGCCGGATACTTGCTTGTCGAGTGCGCTCATGCTGCTTCCCCTTTCGCTGATTCAAGATGTGTGACGCATGCGGCCTTGCGGCCTTTTCGTTCTCGCCGGAGTAGAGAATTTTCGAGGCAGGCGCTGGTGTGCGGGCGATGAAAGCGTTGGTCGACTGCATCCGGTACCGGCTGACCAGGTAGCCTTCCGCGGATGCGAGGCAGTTGGTGCTGATGCCTTTCCAGTTCATGGCCGAATCCCCCGCCGAGCTCTATCCTTGCGCCACAAATAGCGGCAGAGTTCGAGCAGGCCGCCCCCGAGTACCAACAGAAATCCGAAGTAGAAGTGGACGAGATTCATGCTGCTGCTCTCCTGAGTTCACGGGTCTTGGCGCGGTATTCGGCGGTGATGGCCTTGAGGTCTTCGATGGTGTAGCGCTTGGGTTCGTGGGGGCCTTCCAGCCACTCGACAAGATCGGTGCCGATGCGCTTCACCAGTTCGATGCGGTATTCAACGATTGCCCCGGACTTCCCCATGTyGCAGTTGCGATTGCACTGCAGATGGACGTTCAGCGGCTCGAAACGCAACTCTGGGCACGACTTGACGGTGCGGTAGTGGCCGGCTGCGTACTGGACGTTCGCGGTCGTCCCGCATGAGATGCATGGCTTGCCGGCGTCTCTGGCGCGGATCCAGGCGTTGAACGCTATCTGGCAGTCACGCATGTACCGGCCCTTCGTCTTAACGCGCTCCTTGGCCGCTCTCAGCTCATTGCGGCTACATCGGCAAGGGCTTTGCGAGCCTTGTCGGCGTTCTCAGGACTTGATCGCCAGTCCGCAGGCAGGACTGCAGACCTTCTGACCGAGGCGCTGAGGGTCGAATGAGGCCATGCACTCTGGGTTGGCGCAGATCTTGGGTTTGCGGGGTTTGGACGGAAGAGTCATTCCTCGGCCCCTCCGCACGCTTGCGAGATATGCATTCCGCGCCCGCTCGTTGCGCGCCTTTTGCCGGCGCTGGTTGACCGGCCCCATCAAGC
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B09090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0505050505050505050505050505050505050505050505050505050505050505050505050505050503030303030303030303030303030303030303030303030303030303030303030303030303030305050505050505050505050505050505050505050503030303030303030303030303030303030303030316030303030303030303030303030303030303030303030303030303030303030303030303090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 210
seq_id
com_name
type
method asmg
ed_status
redundancy 1.18
perc_N 0.10
seq# 3
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_002_B07.x01.phd.1
asm_lend 1
asm_rend 486
seq_lend 1
seq_rend 486
best 0
comment
db sdsu
offset 0
lsequence GTGGTCGCCGGATACTTGCTTGTCGAGTGCGCTCATGCTGCTTCCCCTTTCGCTGATTCAAGATGTGTGACGCATGCGGCCTTGCGGCCTTTTCGTTCTCGCCGGAGTAGAGAATTTTCGAGGCAGGCGCTGGTGTGCGGGCGATGAAAGCGTTGGTCGACTGCATCCGGTACCGGCTGACCAGGTAGCCTTCCGCGGATGCGAGGCAGTTGGTGCTGATGCCTTTCCAGTTCATGGCCGAATCCCCCGCCGAGCTCTATCCTTGCGCCACAAATAGCGGCAGAGTTCGAGCAGGCCGCCCCCGAGTACCAACAGAAATCCGAAGTAGAAGTGGACGAGATTCATGCTGCTGCTCTCCTGAGTTCACGGGTCTTGGCGCGGTATTCGGCGGTGATGGCCTTGAGGTCTTCGATGGTGTAGCGCTTGGGTTCGTGGGGGCCTTCCAGCCACTCGACAAGATCGGTGCCGATGCGCTTCACCAGTTCG
seq_name SDSU_RFPERU_015_C06.x01.phd.1
asm_lend 403
asm_rend 560
seq_lend 1
seq_rend 158
best 0
comment
db sdsu
offset 402
lsequence AGGTCTTCGATGGTGTAGCGCTTGGGTTCGTGGGGGCCTTCCAGCCACTCGACAAGATCGGTGCCGATGCGCTTCACCAGTTCGATGCGGTATTCAACGATTGCCCCGGACTTCCCCATGTTGCAGTTGCGATTGCACTGCAGATGGACGTTCAGCGG
seq_name SDSU_RFPERU_015_E04.x01.phd.1
asm_lend 463
asm_rend 1018
seq_lend 1
seq_rend 556
best 0
comment
db sdsu
offset 462
lsequence GTGCCGATGCGCTTCACCAGTTCGATGCGGTATTCAACGATTGCCCCGGACTTCCCCATGTCGCAGTTGCGATTGCACTGCAGATGGACGTTCAGCGGCTCGAAACGCAACTCTGGGCACGACTTGACGGTGCGGTAGTGGCCGGCTGCGTACTGGACGTTCGCGGTCGTCCCGCATGAGATGCATGGCTTGCCGGCGTCTCTGGCGCGGATCCAGGCGTTGAACGCTATCTGGCAGTCACGCATGTACCGGCCCTTCGTCTTAACGCGCTCCTTGGCCGCTCTCAGCTCATTGCGGCTACATCGGCAAGGGCTTTGCGAGCCTTGTCGGCGTTCTCAGGACTTGATCGCCAGTCCGCAGGCAGGACTGCAGACCTTCTGACCGAGGCGCTGAGGGTCGAATGAGGCCATGCACTCTGGGTTGGCGCAGATCTTGGGTTTGCGGGGTTTGGACGGAAGAGTCATTCCTCGGCCCCTCCGCACGCTTGCGAGATATGCATTCCGCGCCCGCTCGTTGCGCGCCTTTTGCCGGCGCTGGTTGACCGGCCCCATCAAGC
|
sequence AGCCTGCTGGCGGGATGCTCTACTTGTACTTCACGGACAATCTCGGGACCGGCGGTGGCGGGAATGAsCCGTATCTTTCGGGAGCGTTGGCCAGGGCGAGCGCCAATGACCTTCAGTGGTCGGCCTCGCCATCCGCAGGATCGGTTGTGsCGGGGCCTAATGGCGTGCTGAGCGCTGCCTCCAAGGTCACTGTTAATCCCGTCAACTTTCAGATCGATACATCATCTATCACCGCCGGCGTCACTGAGGAGGTAGTCTACCGGATAGACTTTGGCTCGACTCAGATCGGTGACCTCTTCATCGAGGCATATGGTTCGTGCGACACGCGTGGCGTCATCCTCGACAACAATAAGGTGGTCAATCTGGCCATGGGCGGCCACAGCATAGGCGGCTGGCTTGGTCTTGAGGCCTCATATTCAAGCGAGACGGCCGATCACGTCGCACAAATCCTGAATCACGTCCCTGTTCAGCCATCGCACGTCATTACCCA
lsequence AGCCTGCTGGCGGGATGCTCTACTTGTACTTCACGGACAATCTCGGGACCGGCGGTGGCGGGAATGAsCCGTATCTTTCGGGAGCGTTGGCCAGGGCGAGCGCCAATGACCTTCAGTGGTCGGCCTCGCCATCCGCAGGATCGGTTGTGsCGGGGCCTAATGGCGTGCTGAGCGCTGCCTCCAAGGTCACTGTTAATCCCGTCAACTTTCAGATCGATACATCATCTATCACCGCCGGCGTCACTGAGGAGGTAGTCTACCGGATAGACTTTGGCTCGACTCAGATCGGTGACCTCTTCATCGAGGCATATGGTTCGTGCGACACGCGTGGCGTCATCCTCGACAACAATAAGGTGGTCAATCTGGCCATGGGCGGCCACAGCATAGGCGGCTGGCTTGGTCTTGAGGCCTCATATTCAAGCGAGACGGCCGATCACGTCGCACAAATCCTGAATCACGTCCCTGTTCAGCCATCGCACGTCATTACCCA
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0505050505050505050505050505050303030303030303030303030303030303030303030303030303031603030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030316030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030305050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 453
seq_id
com_name
type
method asmg
ed_status
redundancy 1.66
perc_N 0.41
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_015_H03.x01.phd.1
asm_lend 1
asm_rend 346
seq_lend 1
seq_rend 346
best 0
comment
db sdsu
offset 0
lsequence AGCCTGCTGGCGGGATGCTCTACTTGTACTTCACGGACAATCTCGGGACCGGCGGTGGCGGGAATGACCCGTATCTTTCGGGAGCGTTGGCCAGGGCGAGCGCCAATGACCTTCAGTGGTCGGCCTCGCCATCCGCAGGATCGGTTGTGCCGGGGCCTAATGGCGTGCTGAGCGCTGCCTCCAAGGTCACTGTTAATCCCGTCAACTTTCAGATCGATACATCATCTATCACCGCCGGCGTCACTGAGGAGGTAGTCTACCGGATAGACTTTGGCTCGACTCAGATCGGTGACCTCTTCATCGAGGCATATGGTTCGTGCGACACGCGTGGCGTCATCCTCGACAA
seq_name SDSU_RFPERU_007_E09.x01.phd.1
asm_lend 26
asm_rend 490
seq_lend 1
seq_rend 465
best 0
comment
db sdsu
offset 25
lsequence GTACTTCACGGACAATCTCGGGACCGGCGGTGGCGGGAATGAGCCGTATCTTTCGGGAGCGTTGGCCAGGGCGAGCGCCAATGACCTTCAGTGGTCGGCCTCGCCATCCGCAGGATCGGTTGTGGCGGGGCCTAATGGCGTGCTGAGCGCTGCCTCCAAGGTCACTGTTAATCCCGTCAACTTTCAGATCGATACATCATCTATCACCGCCGGCGTCACTGAGGAGGTAGTCTACCGGATAGACTTTGGCTCGACTCAGATCGGTGACCTCTTCATCGAGGCATATGGTTCGTGCGACACGCGTGGCGTCATCCTCGACAACAATAAGGTGGTCAATCTGGCCATGGGCGGCCACAGCATAGGCGGCTGGCTTGGTCTTGAGGCCTCATATTCAAGCGAGACGGCCGATCACGTCGCACAAATCCTGAATCACGTCCCTGTTCAGCCATCGCACGTCATTACCCA
|
sequence GAACCGGGGCGTCAGGTGCGCCACGCCGTTAAGCGCCGTGCCGTCAGCACGGTCACGTTGCTGGAGAACGTCAGGTGCCCGAGATGCCCATTGGCGAGGTGGAGACGTTCGAGCCGTCCACTGCCACACCGGTCAGGGTGTAGACGTTGGAACCAACCAGCACGCCGGCCGTGTTGGTGCCGGATACAGCCACCATCTGGCCGTTCACCAGAACGGTCTGGAAGCCACGCACGTCGTCGACCGAAATGGTmGCAGCAGGTGCGCCCAGAGTGGTACGAACACGGGTGTTGCCGCCCAGATAGGCGTTGAACAGCGCGTTACGAGCCAGACGATCGAGGGTCTGACGAGCCTGGATGCCGTTGGTCTTCGCGTTCTTGAGGAACTGGTTCGCGATACCGACCTGGCTGGTCACGACGTTGAGGTCGATGGTGTCAGCGTACATGTTGATGCCGAGCGTGTACTGCTCGACGGTGAACGCTGACGGGGTCAGcCGTTGTCCAGGTTGGTGTTACCCGACGGGGTCAGCGGAGTGTGCTGGCGCCTTCA
lsequence GAACCGGGGCGTCAGGTGCGCCACGCCGTTAAGCGCCGTGCCGTCAGCACGGTCACGTTGCTGGAGAACGTCAGGTGCCCGAGATGCCCATTGGCGAGGTGGAGACGTTCGAGCCGTCCACTGCCACACCGGTCAGGGTGTAGACGTTGGAACCAACCAGCACGCCGGCCGTGTTGGTGCCGGATACAGCCACCATCTGGCCGTTCACCAGAACGGTCTGGAAGCCACGCACGTC-GTCGACCGAAATGGTmGCAGCAGGTGCGCCCAGAGTGGTACGAACACGGGTGTTGCCGCCCAGATAGGCGTTGAACAGCGCGTTACGAGCCAGACGATCGAGGGTCTGACGAGCCTGGATGCCGTTGGTCTTCGCGTTCTTGAGGAACTGGTTCGCGATACCGACCTGGCTGGTCACGACGTTGAGGTCGATGGTGTCAGCGTACATGTTGATGCCGAGCGTGTACTGCTCGACGGTGAACGCTGACGGGGTCAG-cCGTTGTCCAGGTTGGTGTTACCCGACGGGGTCAGCGGAGTGTGCTGGCGCCTTCA
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090903030303030303030303030303030303030303030303030303030303030303030303030303030303030803030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303080303030303030303030303030303031603030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030305050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050E05050505050505050505050505050505050505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 500
seq_id
com_name
type
method asmg
ed_status
redundancy 2.21
perc_N 0.37
seq# 3
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_004_H12.x01.phd.1
asm_lend 1
asm_rend 369
seq_lend 1
seq_rend 370
best 0
comment
db sdsu
offset 0
lsequence GAACCGGGGCGTCAGGTGCGCCACGCCGTTAAGCGCCGTGCCGTCAGCACGGTCACGTTGCTGGAGAACGTCAGGTGCCCGAGATGCCCATTGGCGAGGTGGAGACGTTCGAGCCGTCCACTGCCACACCGGTCAGGGTGTAGACGTTGGAACCAACCAGCACGCCGGCCGTGTTGGTGCCGGATACAGCCACCATCTGGCCGTTCACCAGAACGGTCTGGAAGCCACGCACGTCAGTCGACCGAAATGGTCGCAGCAGGTGCGCCCAGAGTGGTACGAACACGGGTGTTGCCGCCCAGATAGGCGTTGAACAGCGCGTTACGAGCCAGACGATCGAGGGTCTGACGAGCCTGGATGCCGTTGGTCTTCG
seq_name SDSU_RFPERU_010_D10.x01.phd.1
asm_lend 97
asm_rend 546
seq_lend 2
seq_rend 451
best 0
comment
db sdsu
offset 96
lsequence AGGTGGAGACGTTCGAGCCGTCCACTGCCACACCGGTCAGGGTGTAGACGTTGGAACCAACCAGCACGCCGGCCGTGTTGGTGCCGGATACAGCCACCATCTGGCCGTTCACCAGAACGGTCTGGAAGCCACGCACGTC-GTCGACCGAAATGGTAGCAGCAGGTGCGCCCAGAGTGGTACGAACACGGGTGTTGCCGCCCAGATAGGCGTTGAACAGCGCGTTACGAGCCAGACGATCGAGGGTCTGACGAGCCTGGATGCCGTTGGTCTTCGCGTTCTTGAGGAACTGGTTCGCGATACCGACCTGGCTGGTCACGACGTTGAGGTCGATGGTGTCAGCGTACATGTTGATGCCGAGCGTGTACTGCTCGACGGTGAACGCTGACGGGGTCAG-CCGTTGTCCAGGTTGGTGTTACCCGACGGGGTCAGCGGAGTGTGCTGGCGCCTTCA
seq_name SDSU_RFPERU_006_D03.x01.phd.1
asm_lend 125
asm_rend 510
seq_lend 2
seq_rend 387
best 0
comment
db sdsu
offset 124
lsequence CACACCGGTCAGG-TGTAGACGTTGGAACCAACCAGCACGCCGGCCGTGTTGGTGCCGGATACAGCCACCATCTGGCCGTTCACCAGAACGGTCTGGAAGCCACGCACGTC-GTCGACCGAAATGGTCGCAGCAGGTGCGCCCAGAGTGGTACGAACACGGGTGTTGCCGCCCAGATAGGCGTTGAACAGCGCGTTACGAGCCAGACGATCGAGGGTCTGACGAGCCTGGATGCCGTTGGTCTTCGCGTTCTTGAGGAACTGGTTCGCGATACCGACCTGGCTGGTCACGACGTTGAGGTCGATGGTGTCAGCGTACATGTTGATGCCGAGCGTGTACTGCTCGACGGTGAACGCTGACGGGGTCAGGCCGTTGTCCAGGTTGGTGTT
|
sequence CTTGCTGTAGGAACGCCTGCACACCGCGGTTGCCGCTCATGACCGCGTCCTTCTCGTTGTCGTCGGAGAGCGATCGCCGAAGTCCAGGTTCGTCTCGCCAGGAATGCCTACCTGCGTATCCTCCGCGCCCGGCTCCTGGTCGACGTCCGGCTGGTTGACGAAGCCGGCGTTCGGGCCCTGCATGGGGTTCGACGTGTAGAGGGGATAGCCGCCTGCGCCGGCTTGGAACTGCGAGCCTTTCGCGGGCTTCTTCTCGCCCGATGCGCCAATGCTCGCGTCCGTGATGGGGCTCTGGCCCTGATTCTGAAAGATGCTGTTGAACGCCTGCAGCTGCTCCTGCTGCTGGCTGGTCGCCTCCCACTCCGCCATCGAGCGGAGGTACGCGTCCATCATGGGGTTGCCGCCCTCGATGCCCGTCTTCAGATTGCGGTCGACATCGCCGCGAGGCTGCTGCCAGTCTTGATATGTTCGTCGCCGTGTTCGCCCCA
lsequence CTTGCTGTAGGAACGCCTGCACACCGCGGTTGCCGCTCATGACCGCGTCCTTCTCGTTGTCGTCGGAGAGCGATCGCCGAAGTCCAGGTTCGTCTCGCCAGGAATGCCTACCTGCGTATCCTCCGCGCCCGGCTCCTGGTCGACGTCCGGCTGGTTGACGAAGCCGGCGTTCGGGCCCTGCATGGGGTTCGACGTGTAGAGGGGATAGCCGCCTGCGCCGGCTTGGAACTGCGAGCCTTTCGCGGGCTTCTTCTCGCCCGATGCGCCAATGCTCGCGTCCGTGATGGGGCTCTGGCCCTGATTCTGAAAGATGCTGTTGAACGCCTGCAGCTGCTCCTGCTGCTGGCTGGTCGCCTCCCACTCCGCCATCGAGCGGAGGTACGCGTCCATCATGGGGTTGCCGCCCTCGATGCCCGTCTTCAGATTGCGGTCGACATCGCCGCGAGGCTGCTGCCAGTCTTGATATGTTCGTCGCCGTGTTCGCCCCA
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B09090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B050505050505050505050505050505050505050505050505050505050505050505050505050505050303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303050505050505050505050505050505050505050505050505050505050505050505050505050505050505050505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 613
seq_id
com_name
type
method asmg
ed_status
redundancy 1.35
perc_N 0.00
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_013_C08.x01.phd.1
asm_lend 1
asm_rend 408
seq_lend 1
seq_rend 408
best 0
comment
db sdsu
offset 0
lsequence CTTGCTGTAGGAACGCCTGCACACCGCGGTTGCCGCTCATGACCGCGTCCTTCTCGTTGTCGTCGGAGAGCGATCGCCGAAGTCCAGGTTCGTCTCGCCAGGAATGCCTACCTGCGTATCCTCCGCGCCCGGCTCCTGGTCGACGTCCGGCTGGTTGACGAAGCCGGCGTTCGGGCCCTGCATGGGGTTCGACGTGTAGAGGGGATAGCCGCCTGCGCCGGCTTGGAACTGCGAGCCTTTCGCGGGCTTCTTCTCGCCCGATGCGCCAATGCTCGCGTCCGTGATGGGGCTCTGGCCCTGATTCTGAAAGATGCTGTTGAACGCCTGCAGCTGCTCCTGCTGCTGGCTGGTCGCCTCCCACTCCGCCATCGAGCGGAGGTACGCGTCCATCATGGGGTTGCCGCCCTC
seq_name SDSU_RFPERU_015_A05.x01.phd.1
asm_lend 237
asm_rend 488
seq_lend 1
seq_rend 252
best 0
comment
db sdsu
offset 236
lsequence CTTTCGCGGGCTTCTTCTCGCCCGATGCGCCAATGCTCGCGTCCGTGATGGGGCTCTGGCCCTGATTCTGAAAGATGCTGTTGAACGCCTGCAGCTGCTCCTGCTGCTGGCTGGTCGCCTCCCACTCCGCCATCGAGCGGAGGTACGCGTCCATCATGGGGTTGCCGCCCTCGATGCCCGTCTTCAGATTGCGGTCGACATCGCCGCGAGGCTGCTGCCAGTCTTGATATGTTCGTCGCCGTGTTCGCCCCA
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sequence TCGGCTTTCGGCGCAACCACCGCCACCAGCCAGCTGGCTACCACTGACCTGCTGACCCTCGGCACCATCGAGGACGCGGTTGCTGCCCTGCGCAACAACACCGGCATGCAGGACGAGATGTTCAACCTGTACCTCGACAACGTGTCGATGCGCCAGCTGTTCGCCGACGGCGACTTCAAGCTGATGTACCAAGGCCAATACGGCTCGCCTGAAGCGCGTCAGGGCAAAGTGTTCCAGCTGAyGGGTGTGAACTTCATCCCTACCACTGAAGCGCTGACCCAAGTCAAGGGTTCGCTGGCCACTCCGGTGCGCCGTCCAATCCTGTGCGCTyCTGGTGCACTGGTGGAAGGTGACTTCGCCGGCATCATGCAGAAAGCCCATGAAACCTGGGGCATCAACTCGGAAGTGCAGTTTGTGGACGACGTTGCCCAAGTCGTGCGCGCGCCGCTCGACCGCCTGCAACAGATCGTTGCCCAGTCGTGGTTCTGGATCGGCC
lsequence TCGGCTTTCGGCGCAACCACCGCCACCAGCCAGCTGGCTACCACTGACCTGCTGACCCTCGGCACCATCGAGGACGCGGTTGCTGCCCTGCGCAACAACACCGGCATGCAGGACGAGATGTTCAACCTGTACCTCGACAACGTGTCGATGCGCCAGCTGTTCGCCGACGGCGACTTCAAGCTGATGTACCAAGGCCAATACGGCTCGCCTGAAGCGCGTCAGGGCAAAGTGTTCCAGCTGAyGGGTGTGAACTTCATCCCTACCACTGAAGCGCTGACCCAAGTCAAGGGTTCGCTGGCCACTCCGGTGCGCCGTCCAATCCTGTGCGCTyCTGGTGCACTGGTGGAAGGTGACTTCGCCGGCATCATGCAGAAAGCCCATGAAACCTGGGGCATCAACTCGGAAGTGCAGTTTGTGGACGACGTTGCCCAAGTCGTGCGCGCGCCGCTCGACCGCCTGCAACAGATCGTTGCCCAGTCGTGGTTCTGGATCGGCC
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B09090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B05050505050505050505050505050505051605050505050505050505050505050505050505050505030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303160303030303030303030303030303030303030303030303030303030303050505050505050E05050505050505050505050505050505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 668
seq_id
com_name
type
method asmg
ed_status
redundancy 1.32
perc_N 0.40
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_012_H02.x01.phd.1
asm_lend 1
asm_rend 385
seq_lend 1
seq_rend 385
best 0
comment
db sdsu
offset 0
lsequence TCGGCTTTCGGCGCAACCACCGCCACCAGCCAGCTGGCTACCACTGACCTGCTGACCCTCGGCACCATCGAGGACGCGGTTGCTGCCCTGCGCAACAACACCGGCATGCAGGACGAGATGTTCAACCTGTACCTCGACAACGTGTCGATGCGCCAGCTGTTCGCCGACGGCGACTTCAAGCTGATGTACCAAGGCCAATACGGCTCGCCTGAAGCGCGTCAGGGCAAAGTGTTCCAGCTGATGGGTGTGAACTTCATCCCTACCACTGAAGCGCTGACCCAAGTCAAGGGTTCGCTGGCCACTCCGGTGCGCCGTCCAATCCTGTGCGCTCCTGGTGCACTGGTGGAAGGTGACTTCGCCGGCATCAAGCAGAAAGCCCATGAAA
seq_name SDSU_RFPERU_010_B06.x01.phd.1
asm_lend 225
asm_rend 496
seq_lend 1
seq_rend 272
best 0
comment
db sdsu
offset 224
lsequence CAAAGTGTTCCAGCTGACGGGTGTGAACTTCATCCCTACCACTGAAGCGCTGACCCAAGTCAAGGGTTCGCTGGCCACTCCGGTGCGCCGTCCAATCCTGTGCGCTTCTGGTGCACTGGTGGAAGGTGACTTCGCCGGCATCATGCAGAAAGCCCATGAAACCTGGGGCATCAACTCGGAAGTGCAGTTTGTGGACGACGTTGCCCAAGTCGTGCGCGCGCCGCTCGACCGCCTGCAACAGATCGTTGCCCAGTCGTGGTTCTGGATCGGCC
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