BLASTX 2.0.13 [May-26-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 18.ctg12393
         (6959 letters)

Database: h_nrNov10_2000
           57,234 sequences; 18,303,128 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|728837|sp|P39194|ALU7_HUMAN ALU SUBFAMILY SQ SEQUENCE CONTAM...   161  8e-39
gi|728836|sp|P39193|ALU6_HUMAN ALU SUBFAMILY SP SEQUENCE CONTAM...   156  3e-37

>gi|728837|sp|P39194|ALU7_HUMAN ALU SUBFAMILY SQ SEQUENCE
            CONTAMINATION WARNING ENTRY
          Length = 593

 Score =  161 bits (404), Expect = 8e-39
 Identities = 73/97 (75%), Positives = 76/97 (78%)
 Frame = -1

Query: 2996 FFLRQSFTLVTQAGVQWHDLSSLQPLPPRFKGFSSLSLPISWDYRRLPPCLANFCIFHKD 2817
            FFLR+SF LV QAGVQW DL SLQP PP FK FS LSLP SWDYRR PP  ANFCIF +D
Sbjct: 299  FFLRRSFALVAQAGVQWRDLGSLQPPPPGFKRFSCLSLPSSWDYRRPPPRPANFCIFSRD 358

Query: 2816 GVLPCWPGWS*TPDLR*YAHFGIPKCWDYRREPPCPA 2706
            GV PCWPGWS TPDLR     G+PKCWDYRREPP PA
Sbjct: 359  GVSPCWPGWSRTPDLRXSTRLGLPKCWDYRREPPRPA 395


 Score =  156 bits (391), Expect = 3e-37
 Identities = 76/97 (78%), Positives = 83/97 (85%)
 Frame = +3

Query: 2706 GRARWLTPVIPALWDAKVGISSEVRSSRPAWPTWQNSVFMKNTKISQAWWQAPVIPANWE 2885
            GRARWLTPVIPALW+A+ G S EVRSSRPAWPTW N V  KNTKIS+AWW+APVIPA  E
Sbjct: 1    GRARWLTPVIPALWEAEAGGSPEVRSSRPAWPTWXNPVSTKNTKISRAWWRAPVIPATRE 60

Query: 2886 AEAGESLESRRQRLQ*AEIVPLHSSLGDKSKTLSQKK 2996
            AEAGESLE  R+RLQ AEI PLHSSLG+KS+T SQKK
Sbjct: 61   AEAGESLEPGRRRLQXAEIAPLHSSLGNKSETPSQKK 97


 Score =  140 bits (349), Expect = 2e-32
 Identities = 74/101 (73%), Positives = 79/101 (77%)
 Frame = -2

Query: 2995 FF*DRVLLLSPRLECNGTISAHCNLCLLDSRDSPASASQLAGITGACHHAWLIFVFFIKT 2816
            FF D V LL PRLEC+G ISAHCNL L  S DSPASAS++AGITGA HHA LIFVF ++T
Sbjct: 399  FFXDGVSLLLPRLECSGAISAHCNLRLPGSSDSPASASRVAGITGARHHARLIFVFLVET 458

Query: 2815 EFCHVGQAGLELLTSDDMPTLASQSAGITGVSHRARPGIMF 2693
             F HVGQAGLELLTS D P  ASQSAGITGVSHRAR    F
Sbjct: 459  GFHHVGQAGLELLTSGDPPASASQSAGITGVSHRARXXXFF 499


 Score =  134 bits (334), Expect = 1e-30
 Identities = 67/89 (75%), Positives = 71/89 (79%)
 Frame = +1

Query: 2707 AGHGGSRL*SQHFGMPKWAYHLRSGVQDQPGQHGKTPSL*KIQKLARHGGRRL*SQLIGR 2886
            AG GGSRL SQHFG P+   HLRSGV+DQPGQHG+TPSL KIQKLA  GG RL SQL+GR
Sbjct: 101  AGRGGSRLXSQHFGRPRRVDHLRSGVRDQPGQHGETPSLLKIQKLAGRGGGRLXSQLLGR 160

Query: 2887 LRLENPLNLGGRGCSELRSCHCTPAWVTR 2973
            LR EN LN GG GCSE RS HCTPAW TR
Sbjct: 161  LRQENRLNPGGGGCSEPRSRHCTPAWATR 189


 Score =  129 bits (321), Expect = 4e-29
 Identities = 72/101 (71%), Positives = 75/101 (73%)
 Frame = +2

Query: 2693 KHYTWPGTVAHACNPSTLGCQSGHII*GQEFKTSLANMAKLRLYEKYKN*PGMVAGACNP 2872
            K    PG VAHACNPSTLG + G I  GQEF+TSLANM K RLY KYKN PG+VAGACNP
Sbjct: 195  KKXXXPGAVAHACNPSTLGGRGGWITXGQEFETSLANMVKPRLYXKYKNXPGVVAGACNP 254

Query: 2873 S*LGG*GWRIP*I*EAEVAVS*DRAIALQPG*QE*NSVSKK 2995
            S  GG G RI    EAEVAVS DRA ALQPG QE NSVSKK
Sbjct: 255  SYSGGXGRRIAXTREAEVAVSRDRATALQPGQQERNSVSKK 295


 Score =  119 bits (295), Expect = 5e-26
 Identities = 74/101 (73%), Positives = 79/101 (77%), Gaps = 54/101 (53%)
 Frame = +1

Query: 5179 FFLRWSFALSPRLECSGAISAHCNLRLPGSSNSPASASRVAGTTGVRHHTRLIFVFFVKT 5358
            FF      L PRLECSGAISAHCNLRLPGSS+SPASASRVAG TG RHH RLIFVF V+T
Sbjct: 399  FFXDGVSLLLPRLECSGAISAHCNLRLPGSSDSPASASRVAGITGARHHARLIFVFLVET 458

Query: 5359 GFHHVGQ------------------AGLN------------------------------- 5391
            GFHHVGQ                  AG+                                
Sbjct: 459  GFHHVGQAGLELLTSGDPPASASQSAGITGVSHRARXXXFFETEFRSCCPGWSAVARSRL 518

Query: 5392 -----SRPQVIHLSQPPKVLGLQV*ATVPGYFMDF 5481
                 SR Q I L QPP+ LGLQ  AT PG F+ F
Sbjct: 519  TATSASRVQAILLPQPPEXLGLQAPATTPGXFLYF 553


 Score =  113 bits (281), Expect = 2e-24
 Identities = 65/94 (69%), Positives = 73/94 (77%), Gaps = 55/94 (58%)
 Frame = +3

Query: 5205 VTQAGMQWCNLSSLQPPPPRFKQFSCLSLPSSWDYRCAPPHQANFCIFCKDRFSPRWPGW 5384
            V QAG+QW +L SLQPPPP FK+FSCLSLPSSWDYR  PP  ANFCIF +D  SP WPGW
Sbjct: 308  VAQAGVQWRDLGSLQPPPPGFKRFSCLSLPSSWDYRRPPPRPANFCIFSRDGVSPCWPGW 367

Query: 5385 S-----------------------------------------ELQTSG------------ 5405
            S                                          L+ SG            
Sbjct: 368  SRTPDLRXSTRLGLPKCWDYRREPPRPAXXXFFXDGVSLLLPRLECSGAISAHCNLRLPG 427

Query: 5406 --DSPVSASQSAGITGVSHRARLLHGFLI 5486
              DSP SAS+ AGITG  H ARL+  FL+
Sbjct: 428  SSDSPASASRVAGITGARHHARLIFVFLV 456


 Score =  111 bits (276), Expect(2) = 1e-32
 Identities = 51/63 (80%), Positives = 55/63 (86%)
 Frame = -1

Query: 5387 RPAWPTW*KPVFTKNTKISLVWWRTPVVPATREAEAGELLEPGRRRLQ*AEIAPLHSSLG 5208
            RPAWPTW  PV TKNTKIS  WWR PV+PATREAEAGE LEPGRRRLQ AEIAPLHSSLG
Sbjct: 28   RPAWPTWXNPVSTKNTKISRAWWRAPVIPATREAEAGESLEPGRRRLQXAEIAPLHSSLG 87

Query: 5207 DRA 5199
            +++
Sbjct: 88   NKS 90


 Score = 89.7 bits (219), Expect(2) = 6e-24
 Identities = 45/61 (73%), Positives = 45/61 (73%)
 Frame = -2

Query: 5386 DQPGQRGENLSLQKIQKLAWCGGAHL*SQLLGRLRQENCLNLGGGGCSELRLHHCIPAWV 5207
            DQPGQ GE  SL KIQKLA  GG  L SQLLGRLRQEN LN GGGGCSE R  HC PAW 
Sbjct: 128  DQPGQHGETPSLLKIQKLAGRGGGRLXSQLLGRLRQENRLNPGGGGCSEPRSRHCTPAWA 187

Query: 5206 T 5204
            T
Sbjct: 188  T 188


 Score = 87.8 bits (214), Expect = 1e-16
 Identities = 53/89 (59%), Positives = 56/89 (62%)
 Frame = -3

Query: 2973 SCHPGWSAMARSQLTATSASXXXXXXXXXXXXXXXXXXXATMPG*FLYFS*RRSFAMLAR 2794
            SC PGWSA+ARS+LTATSAS                   AT PG FLYF  RR F MLAR
Sbjct: 505  SCCPGWSAVARSRLTATSASRVQAILLPQPPEXLGLQAPATTPGXFLYFXXRRGFTMLAR 564

Query: 2793 LVLNS*PQMICPLWHPKVLGLQA*ATVPG 2707
            LV NS PQ+I P   PKVLGLQA AT PG
Sbjct: 565  LVSNSXPQVIHPPRPPKVLGLQAXATAPG 593


 Score = 83.1 bits (202), Expect = 4e-15
 Identities = 45/62 (72%), Positives = 48/62 (76%)
 Frame = -3

Query: 5388 QTSLANVVKTCLYKKYKN*PGVVAHTCSPSYSGG*GRRIA*TWEAEVAVS*DCTTAFQPG 5209
            +TSLAN+VK  LY KYKN PGVVA  C+PSYSGG GRRIA T EAEVAVS D  TA QPG
Sbjct: 226  ETSLANMVKPRLYXKYKNXPGVVAGACNPSYSGGXGRRIAXTREAEVAVSRDRATALQPG 285

Query: 5208 *Q 5203
             Q
Sbjct: 286  QQ 287


 Score = 62.8 bits (150), Expect = 5e-09
 Identities = 36/61 (59%), Positives = 41/61 (67%)
 Frame = +2

Query: 5204 CHPGWNAVVQSQLTATSASQVQAIXXXXXXXXXXXXVCATTPG*FLYFL*RQVFTTLARL 5383
            C PGW+AV +S+LTATSAS+VQAI              ATTPG FLYF  R+ FT LARL
Sbjct: 506  CCPGWSAVARSRLTATSASRVQAILLPQPPEXLGLQAPATTPGXFLYFXXRRGFTMLARL 565

Query: 5384 V 5386
            V
Sbjct: 566  V 566


 Score = 50.4 bits (118), Expect(2) = 1e-32
 Identities = 23/26 (88%), Positives = 23/26 (88%)
 Frame = -2

Query: 5464 RARWLTPVIPALWEAETGESPEVWSS 5387
            RARWLTPVIPALWEAE G SPEV SS
Sbjct: 2    RARWLTPVIPALWEAEAGGSPEVRSS 27


 Score = 47.6 bits (111), Expect = 2e-04
 Identities = 23/38 (60%), Positives = 24/38 (62%)
 Frame = +2

Query: 5390 TPDLR*FTCLSLPKCWDYRCEPPCPATSWIFDYRLCLL 5503
            TPDLR  T L LPKCWDYR EPP PA    F   + LL
Sbjct: 370  TPDLRXSTRLGLPKCWDYRREPPRPAXXXFFXDGVSLL 407


 Score = 43.4 bits (100), Expect(2) = 6e-24
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -3

Query: 5466 AGHGGSHL*SQHFGRLRQVNHLRSGVQ 5386
            AG GGS L SQHFGR R+V+HLRSGV+
Sbjct: 101  AGRGGSRLXSQHFGRPRRVDHLRSGVR 127


>gi|728836|sp|P39193|ALU6_HUMAN ALU SUBFAMILY SP SEQUENCE
            CONTAMINATION WARNING ENTRY
          Length = 593

 Score =  156 bits (390), Expect = 3e-37
 Identities = 71/97 (73%), Positives = 74/97 (76%)
 Frame = -1

Query: 2996 FFLRQSFTLVTQAGVQWHDLSSLQPLPPRFKGFSSLSLPISWDYRRLPPCLANFCIFHKD 2817
            FFLR+SF LV QAGVQW DL S QP PP FK FS LSLP SWDYR  PP  ANFCIF +D
Sbjct: 299  FFLRRSFALVAQAGVQWRDLGSPQPPPPGFKRFSCLSLPSSWDYRHAPPRPANFCIFSRD 358

Query: 2816 GVLPCWPGWS*TPDLR*YAHFGIPKCWDYRREPPCPA 2706
            GV PCW GWS TPDLR  A  G+PKCWDYRREPP PA
Sbjct: 359  GVSPCWSGWSRTPDLRXSARLGLPKCWDYRREPPRPA 395


 Score =  146 bits (364), Expect = 4e-34
 Identities = 72/97 (74%), Positives = 81/97 (83%)
 Frame = +3

Query: 2706 GRARWLTPVIPALWDAKVGISSEVRSSRPAWPTWQNSVFMKNTKISQAWWQAPVIPANWE 2885
            GRARWLTPVIPALW+A+ G S EV SSRPA PTW+N V  KNTKIS+AWW+ PVIPA  E
Sbjct: 1    GRARWLTPVIPALWEAEAGGSPEVGSSRPAXPTWRNPVSTKNTKISRAWWRMPVIPATRE 60

Query: 2886 AEAGESLESRRQRLQ*AEIVPLHSSLGDKSKTLSQKK 2996
            AEAGESLE  R+RL+ AEI PLHSSLG+KS+T SQKK
Sbjct: 61   AEAGESLEPGRRRLRXAEIAPLHSSLGNKSETPSQKK 97


 Score =  133 bits (332), Expect = 2e-30
 Identities = 72/101 (71%), Positives = 76/101 (74%)
 Frame = -2

Query: 2995 FF*DRVLLLSPRLECNGTISAHCNLCLLDSRDSPASASQLAGITGACHHAWLIFVFFIKT 2816
            FF D V LL PRLECNG ISAH NL L  S DSPASAS++AGITG  HHA LIFVF ++T
Sbjct: 399  FFXDGVSLLLPRLECNGAISAHRNLRLPGSSDSPASASRVAGITGMRHHARLIFVFLVET 458

Query: 2815 EFCHVGQAGLELLTSDDMPTLASQSAGITGVSHRARPGIMF 2693
             F HVGQAGLEL TS D P  ASQSAGITGVSHRAR    F
Sbjct: 459  GFLHVGQAGLELPTSGDPPASASQSAGITGVSHRARXXXFF 499


 Score =  129 bits (320), Expect = 5e-29
 Identities = 65/89 (73%), Positives = 69/89 (77%)
 Frame = +1

Query: 2707 AGHGGSRL*SQHFGMPKWAYHLRSGVQDQPGQHGKTPSL*KIQKLARHGGRRL*SQLIGR 2886
            AG GGSRL SQHFG P+ A HLRSGV+DQP QHG+TPSL KIQKLA  GG  L SQL+GR
Sbjct: 101  AGRGGSRLXSQHFGRPRRADHLRSGVRDQPDQHGETPSLLKIQKLAGRGGACLXSQLLGR 160

Query: 2887 LRLENPLNLGGRGCSELRSCHCTPAWVTR 2973
            LR EN LN GG GC E RS HCTPAW TR
Sbjct: 161  LRQENRLNPGGGGCGEPRSRHCTPAWATR 189


 Score =  125 bits (311), Expect = 6e-28
 Identities = 70/101 (69%), Positives = 74/101 (72%)
 Frame = +2

Query: 2693 KHYTWPGTVAHACNPSTLGCQSGHII*GQEFKTSLANMAKLRLYEKYKN*PGMVAGACNP 2872
            K    PG VAHACNPSTLG + G I  G+EF+TSL NM K RLY KYKN PG+VA ACNP
Sbjct: 195  KKXXXPGAVAHACNPSTLGGRGGRITXGREFETSLTNMEKPRLYXKYKNXPGVVAHACNP 254

Query: 2873 S*LGG*GWRIP*I*EAEVAVS*DRAIALQPG*QE*NSVSKK 2995
            S  GG G RI    EAEVAVS DRAIALQPG QE NSVSKK
Sbjct: 255  SYSGGXGRRIAXTREAEVAVSRDRAIALQPGQQERNSVSKK 295


 Score =  109 bits (270), Expect = 4e-23
 Identities = 71/101 (70%), Positives = 78/101 (76%), Gaps = 54/101 (53%)
 Frame = +1

Query: 5179 FFLRWSFALSPRLECSGAISAHCNLRLPGSSNSPASASRVAGTTGVRHHTRLIFVFFVKT 5358
            FF      L PRLEC+GAISAH NLRLPGSS+SPASASRVAG TG+RHH RLIFVF V+T
Sbjct: 399  FFXDGVSLLLPRLECNGAISAHRNLRLPGSSDSPASASRVAGITGMRHHARLIFVFLVET 458

Query: 5359 GFHHVGQ------------------AGLN------------------------------- 5391
            GF HVGQ                  AG+                                
Sbjct: 459  GFLHVGQAGLELPTSGDPPASASQSAGITGVSHRARXXXFFETEFRSCCPGWSAMARSRL 518

Query: 5392 -----SRPQVIHLSQPPKVLGLQV*ATVPGYFMDF 5481
                 SR Q I L QPP+ LGLQ  AT PG F+ F
Sbjct: 519  TATSASRVQAILLPQPPEXLGLQACATTPGXFLYF 553


 Score =  105 bits (260), Expect = 6e-22
 Identities = 62/94 (65%), Positives = 71/94 (74%), Gaps = 55/94 (58%)
 Frame = +3

Query: 5205 VTQAGMQWCNLSSLQPPPPRFKQFSCLSLPSSWDYRCAPPHQANFCIFCKDRFSPRWPGW 5384
            V QAG+QW +L S QPPPP FK+FSCLSLPSSWDYR APP  ANFCIF +D  SP W GW
Sbjct: 308  VAQAGVQWRDLGSPQPPPPGFKRFSCLSLPSSWDYRHAPPRPANFCIFSRDGVSPCWSGW 367

Query: 5385 S-----------------------------------------------------ELQTSG 5405
            S                                                      L+  G
Sbjct: 368  SRTPDLRXSARLGLPKCWDYRREPPRPAXXXFFXDGVSLLLPRLECNGAISAHRNLRLPG 427

Query: 5406 DS--PVSASQSAGITGVSHRARLLHGFLI 5486
             S  P SAS+ AGITG+ H ARL+  FL+
Sbjct: 428  SSDSPASASRVAGITGMRHHARLIFVFLV 456


 Score =  104 bits (258), Expect(2) = 1e-30
 Identities = 49/63 (77%), Positives = 54/63 (84%)
 Frame = -1

Query: 5387 RPAWPTW*KPVFTKNTKISLVWWRTPVVPATREAEAGELLEPGRRRLQ*AEIAPLHSSLG 5208
            RPA PTW  PV TKNTKIS  WWR PV+PATREAEAGE LEPGRRRL+ AEIAPLHSSLG
Sbjct: 28   RPAXPTWRNPVSTKNTKISRAWWRMPVIPATREAEAGESLEPGRRRLRXAEIAPLHSSLG 87

Query: 5207 DRA 5199
            +++
Sbjct: 88   NKS 90


 Score = 88.2 bits (215), Expect = 1e-16
 Identities = 53/89 (59%), Positives = 56/89 (62%)
 Frame = -3

Query: 2973 SCHPGWSAMARSQLTATSASXXXXXXXXXXXXXXXXXXXATMPG*FLYFS*RRSFAMLAR 2794
            SC PGWSAMARS+LTATSAS                   AT PG FLYF  RR F+ML R
Sbjct: 505  SCCPGWSAMARSRLTATSASRVQAILLPQPPEXLGLQACATTPGXFLYFXXRRGFSMLVR 564

Query: 2793 LVLNS*PQMICPLWHPKVLGLQA*ATVPG 2707
            LV NS PQ+I P   PKVLGLQA AT PG
Sbjct: 565  LVSNSRPQVIRPPRPPKVLGLQAXATAPG 593


 Score = 85.8 bits (209), Expect(2) = 2e-22
 Identities = 44/61 (72%), Positives = 44/61 (72%)
 Frame = -2

Query: 5386 DQPGQRGENLSLQKIQKLAWCGGAHL*SQLLGRLRQENCLNLGGGGCSELRLHHCIPAWV 5207
            DQP Q GE  SL KIQKLA  GGA L SQLLGRLRQEN LN GGGGC E R  HC PAW 
Sbjct: 128  DQPDQHGETPSLLKIQKLAGRGGACLXSQLLGRLRQENRLNPGGGGCGEPRSRHCTPAWA 187

Query: 5206 T 5204
            T
Sbjct: 188  T 188


 Score = 80.8 bits (196), Expect = 2e-14
 Identities = 43/62 (69%), Positives = 46/62 (73%)
 Frame = -3

Query: 5388 QTSLANVVKTCLYKKYKN*PGVVAHTCSPSYSGG*GRRIA*TWEAEVAVS*DCTTAFQPG 5209
            +TSL N+ K  LY KYKN PGVVAH C+PSYSGG GRRIA T EAEVAVS D   A QPG
Sbjct: 226  ETSLTNMEKPRLYXKYKNXPGVVAHACNPSYSGGXGRRIAXTREAEVAVSRDRAIALQPG 285

Query: 5208 *Q 5203
             Q
Sbjct: 286  QQ 287


 Score = 63.2 bits (151), Expect = 4e-09
 Identities = 34/61 (55%), Positives = 41/61 (66%)
 Frame = +2

Query: 5204 CHPGWNAVVQSQLTATSASQVQAIXXXXXXXXXXXXVCATTPG*FLYFL*RQVFTTLARL 5383
            C PGW+A+ +S+LTATSAS+VQAI             CATTPG FLYF  R+ F+ L RL
Sbjct: 506  CCPGWSAMARSRLTATSASRVQAILLPQPPEXLGLQACATTPGXFLYFXXRRGFSMLVRL 565

Query: 5384 V 5386
            V
Sbjct: 566  V 566


 Score = 50.8 bits (119), Expect(2) = 1e-30
 Identities = 23/26 (88%), Positives = 23/26 (88%)
 Frame = -2

Query: 5464 RARWLTPVIPALWEAETGESPEVWSS 5387
            RARWLTPVIPALWEAE G SPEV SS
Sbjct: 2    RARWLTPVIPALWEAEAGGSPEVGSS 27


 Score = 45.7 bits (106), Expect = 7e-04
 Identities = 22/38 (57%), Positives = 23/38 (59%)
 Frame = +2

Query: 5390 TPDLR*FTCLSLPKCWDYRCEPPCPATSWIFDYRLCLL 5503
            TPDLR    L LPKCWDYR EPP PA    F   + LL
Sbjct: 370  TPDLRXSARLGLPKCWDYRREPPRPAXXXFFXDGVSLL 407


 Score = 41.8 bits (96), Expect(2) = 2e-22
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -3

Query: 5466 AGHGGSHL*SQHFGRLRQVNHLRSGVQ 5386
            AG GGS L SQHFGR R+ +HLRSGV+
Sbjct: 101  AGRGGSRLXSQHFGRPRRADHLRSGVR 127


  Database: h_nrNov10_2000
    Posted date:  Nov 10, 2000  9:40 AM
  Number of letters in database: 18,303,128
  Number of sequences in database:  57,234
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262249022
Number of Sequences: 57234
Number of extensions: 6465920
Number of successful extensions: 16162
Number of sequences better than 1.0e-03: 302
Number of HSP's better than  0.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14866
Number of HSP's gapped (non-prelim): 1104
length of query: 2319
length of database: 18,303,128
effective HSP length: 55
effective length of query: 2264
effective length of database: 15,155,258
effective search space: 34311504112
effective search space used: 34311504112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 105 (45.3 bits)