File: test1.wublastp

package info (click to toggle)
bioperl 1.6.1-2
  • links: PTS, VCS
  • area: main
  • in suites: squeeze
  • size: 40,768 kB
  • ctags: 12,005
  • sloc: perl: 174,299; xml: 13,923; sh: 1,941; lisp: 1,803; asm: 109; makefile: 53
file content (97 lines) | stat: -rw-r--r-- 3,255 bytes parent folder | download | duplicates (8)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  000086_1606_1131 this is your fake desc
        (21 letters)

Database:  test_orfs.fa
           307 sequences; 9460 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

000086_1606_1131 [64 - 2] (REVERSE SENSE) length=64 uaccn...   128  1.7e-11   1
000269_0423_3271 [1 - 78] length=78 uaccno=ER8QEOW01BBHO5       76  5.4e-06   1
000780_0082_2331 [1 - 78] length=78 uaccno=ER8QEOW01AHI8T       75  6.9e-06   1


>000086_1606_1131 [64 - 2] (REVERSE SENSE) length=64 uaccno=ER8QEOW01D7AWT
        Length = 21

 Score = 128 (50.1 bits), Expect = 1.7e-11, P = 1.7e-11, Group = 1
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Links = (1)

Query:     1 THITHTYTHITHTSHTHHTHR 21
             THITHTYTHITHTSHTHHTHR
Sbjct:     1 THITHTYTHITHTSHTHHTHR 21


>000269_0423_3271 [1 - 78] length=78 uaccno=ER8QEOW01BBHO5
        Length = 26

 Score = 76 (31.8 bits), Expect = 5.4e-06, P = 5.4e-06, Group = 1
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Links = (1)

Query:     1 THITHTYTHITHT-SHTH-HTH 20
             TH THTYTH THT +HTH HTH
Sbjct:     2 TH-THTYTH-THTQTHTHAHTH 21


>000780_0082_2331 [1 - 78] length=78 uaccno=ER8QEOW01AHI8T
        Length = 26

 Score = 75 (31.5 bits), Expect = 6.9e-06, P = 6.9e-06, Group = 1
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Links = (1)

Query:     1 THI-THTYTHITHT-SHTH-HTH 20
             THI THT+TH THT +HTH HTH
Sbjct:     2 THIHTHTHTH-THTHTHTHTHTH 23


Parameters:
  B=5
  V=5
  E=0.0001
  links
  topcomboN=5

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.122   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +0      0       21        21   9.7e-05  71 3  11 22  0.40    21
                                                    29  0.44    22


Statistics:

  Database:  test_orfs.fa
   Title:  test_orfs.fa
   Posted:  11:50:04 AM CEST May 14, 2008
   Created:  11:50:04 AM CEST May 14, 2008
   Format:  XDF-1
   # of letters in database:  9460
   # of sequences in database:  307
   # of database sequences satisfying E:  3
  No. of states in DFA:  208 (22 KB)
  Total size of DFA:  39 KB (2056 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  2
  Search cpu time:  0.00u 0.02s 0.02t   Elapsed:  00:00:00
  Total cpu time:  0.00u 0.02s 0.02t   Elapsed:  00:00:00
  Start:  Wed May 21 22:50:32 2008   End:  Wed May 21 22:50:32 2008