1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
|
MEGABLAST 2.2.4 [Aug-26-2002]
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences",
J Comput Biol 2000; 7(1-2):203-14.
Database: cneoA.nt
4935 sequences; 17,206,226 total letters
Searching.......... done
Query= 503384 11337 bp 2 contigs
(11,337 letters)
Score E
Sequences producing significant alignments: (bits) Value
Contig3700 785 0.0
Contig3997 664 0.0
Contig634 486 e-136
Contig1853 339 1e-91
>Contig3700
Length = 5631
Score = 785 bits (396), Expect = 0.0
Identities = 639/718 (88%), Gaps = 12/718 (1%)
Strand = Plus / Minus
Query: 8723 gacggcagcccaccgcgccaatcaggttcatccaaattcgtcatcctcgggccgaacatt 8782
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4794 gacggcagcccaccacgtcaatcaggttcatccaaatttatcatcctcgggccgaacatt 4735
Query: 8783 ggacagtactttgaagtatcaagctcagaaggatccagctgcagttcttcgccttccact 8842
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 4734 ggacagtactttgaagtatcaagctcagaaggatccaactgcagttcttctccttccacg 4675
Query: 8843 ccgtcgcattcgcctaaccgtctcaatcatcaacactcatttgacacttctaaaagccgt 8902
|| |||||||||||||||||||||||||||| |||||||||||| |||| || |||||
Sbjct: 4674 ccatcgcattcgcctaaccgtctcaatcatcggcactcatttgacccttccaacggccgt 4615
Query: 8903 tcaccctctccgactgaatgtgacgagattgaccgggtagaatattcatctccagccata 8962
|||| ||||||||| |||||||||||||||||| |||| ||||||||||||| | |||||
Sbjct: 4614 tcacgctctccgaccgaatgtgacgagattgactgggtggaatattcatctctatccata 4555
Query: 8963 gaaatggaagcatgccaaatgtcgggctgggacagtagtgtctccgagttgtcagagggc 9022
| ||||||||||| || ||| || |||||| |||||||||||| || |||||||||||
Sbjct: 4554 gggatggaagcatgtcagatgccgagctgggccagtagtgtctctgaattgtcagagggt 4495
Query: 9023 gactcggagacagagacttccgtgattattacccctgatagagatattcgggat-g--gt 9079
||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 4494 gactcagagacagagagttccgtgattattactcctgatagagatattcgggatggtcgt 4435
Query: 9080 caaagtcagcgcttggatatccgggatatcgtaaggtggaaatacgctttgataagcctt 9139
|||||||||||||||||||||| |||||||||||||||| | ||| |||| |||| |||
Sbjct: 4434 caaagtcagcgcttggatatccaggatatcgtaaggtggcagtacaatttggtaagtctt 4375
Query: 9140 gttaaacatatgtttcataggcct-tacttctcaaacagacctccatcaaatctgaacat 9198
||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |
Sbjct: 4374 gttaaacatatgtttcatagg-ctctacttctcaaacagacttccatcaaatctgaatgt 4316
Query: 9199 ccggctttgagaccgaatcgcttattatcttgccgtacaacttcgagccatacggtggta 9258
| ||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||
Sbjct: 4315 ctggctttgagaccgaatcgc---ctatcttcccgcacaacttcgagccatacggtagtg 4259
Query: 9259 cctcgtgactttaatcgtcgctgtagcgaatcttgctctgttacatc-ggcctcaagctc 9317
||| | |||||||||||||||||||||||| || | |||||| |||| || ||| |||||
Sbjct: 4258 ccttgcgactttaatcgtcgctgtagcgaacctcgttctgttgcatcagg-ctctagctc 4200
Query: 9318 tagttttcatgcccctcagccgggagagttgaa-ccaacatggagatactgtggcttgtg 9376
||||| | ||||||||||| |||||| || |||||||||||||| ||||||||||
Sbjct: 4199 tagttctaatgcccctcagttgggaga-cccaagtcaacatggagataccgtggcttgtg 4141
Query: 9377 aagcttgcggtagaggcacgacaatcactaacgcaaaaaagattatgccttgtcaagt 9434
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 4140 aagcttgcggtagaggcacgaccatcactaacgcaaagaagattatgccttgtcaagt 4083
Score = 753 bits (380), Expect = 0.0
Identities = 541/594 (91%), Gaps = 3/594 (0%)
Strand = Plus / Minus
Query: 10744 taccatatttttctccgttctaccgtattctt-cacatgtatctgcatatcaacgtaaca 10802
||||||| |||||||| || ||||||| | || ||||||||||||| ||| | | || |
Sbjct: 2753 taccatacttttctccattttaccgtactattccacatgtatctgcgtatttatgcaata 2694
Query: 10803 tacaatttccaagatacaacaggaattcaaacaagaaaaatcagatcctcaaccccgcac 10862
||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 2693 tacaatttccaagttacaacaggaatgcaaacaacaaaaatcagatcctcaaccccgcac 2634
Query: 10863 caaacttctttacacagataaggtttacctcatctctcatttgtctccatattctccacc 10922
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct: 2633 caaacttctttacacagataaggttcacctcatccctcatttgcctccatattctccacc 2574
Query: 10923 attcccttccagcctcactcgcaccctcgtttaacccttcgtcctgtgcccacttt-tct 10981
|||||||||||||||| ||| ||| ||| ||||| ||||| |||||| |||| ||| |||
Sbjct: 2573 attcccttccagcctcgctcacactctcatttaatccttcatcctgtcccca-tttctct 2515
Query: 10982 tttatgatcattctcatccatcgcaacacctcgacgactttctcaactccatccccaacc 11041
|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 2514 tttatgatcaccctcatccatctcaacacctcgacgactttctcaactccatctccaacc 2455
Query: 11042 ctgccctcgccatcattcaaacattttttgagaaatgcagccactttaatagcatcctta 11101
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 2454 ttgccctcgccatcattcaaacattttttgagaaatgcggccactttagtagcatccttg 2395
Query: 11102 tctgccggcggactatcttctctggactcgatccataattcaatagtcctgagcacatcg 11161
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2394 tctgccggcggactatcttctctggactcgatccataattcaatagttctgagcacatcg 2335
Query: 11162 ggaagctcggtcgagttcatgagagcgggtttgggcggcctgatgatcttgacactctgt 11221
||||||||||| ||||||||||| ||||||||||| ||| | |||||||||||| | |||
Sbjct: 2334 ggaagctcggttgagttcatgagggcgggtttggggggcttaatgatcttgacattttgt 2275
Query: 11222 ctctgctgcggcgggattgaccgtgatgtggagcggcctctgtacgcgccgacacctccc 11281
||||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct: 2274 ctctgctgcggtgggattgaccgtgatgtggaacggcctctgtacccgccgacaactccc 2215
Query: 11282 aacttgacaggtgagacactggtactcgtccctcttgatctggatctatcccca 11335
|| |||||||| |||||||| |||||||||||||| || ||||||||| |||||
Sbjct: 2214 aatttgacaggagagacactagtactcgtccctctcgacctggatctaccccca 2161
Score = 726 bits (366), Expect = 0.0
Identities = 511/558 (91%), Gaps = 8/558 (1%)
Strand = Plus / Minus
Query: 9759 ctaaagatatcaggacatcactccggccattgttgaggccttccttccgagaaattcgtt 9818
|||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct: 3753 ctaatgatatcaggacatcactccggccactgttgaggcctttcttccgagaaattcatt 3694
Query: 9819 atctcaccgtacccttcaaccaatccatattctccttgacagattcgacgggcgtactaa 9878
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 3693 atctcatagtacccttcaaccaatccatattctccttgacagattcgacggacgtacaaa 3634
Query: 9879 ggacta-c--ctg-g-tacgcccccttttaaagtctgctgctgtgctgaatactcgcttc 9933
|||||| | || | || ||| || |||| ||||| ||||||||||| ||||| ||||
Sbjct: 3633 ggactatctggtgtgctatgccgcc-tttagagtctattgctgtgctgattactcacttc 3575
Query: 9934 gaaaacagtatatcgaagccgcgacaccgcaagccgcacaaactatactcaagacctgtc 9993
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3574 gaaaacagtatatcgaagccgcgacaccgcaagcggcacaaactatactcaagacctgtc 3515
Query: 9994 agaatactttcttgtccggaggagcgctcacttcgggaaggagacggcctgttaccatca 10053
|||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 3514 agaataatttcatgtccggaggagcgctcacttcgggaaggaaacggcctgttactatca 3455
Query: 10054 ctcccgtatcgcattcggagctcatagaagaactgcgtccacattcggctcaggaactcc 10113
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 3454 ctcccgtatctcattcggagctcatagaagaactgcgtccacactcggcccaggaactcc 3395
Query: 10114 attcgctactcgctctttgtcaagctgctatagactcgaattctggatccaaac-aaagt 10172
||||||||||| ||||||||||||||||| | ||||| |||||||||| |||| ||| |
Sbjct: 3394 attcgctactcactctttgtcaagctgctgtggactcaaattctggatgtaaactaaa-t 3336
Query: 10173 acttcaaagtatatcaagtctcgccatgggccatactacgccttgatgtcaacaatgagc 10232
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 3335 acttcaaagtatatcaagtctcgccatggaccatactacgctttgatgtcagcaatgagc 3276
Query: 10233 aaaatgaatggggagcaaagtccctcttactgggacatgttctgtaagtggaatttgagt 10292
||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||
Sbjct: 3275 aaattgaatggggagcaaagtccttcttactgggacatgttctgtaagtgggattcgagc 3216
Query: 10293 atggtcgtagagctcttg 10310
||| ||||||||||||||
Sbjct: 3215 atgatcgtagagctcttg 3198
Score = 400 bits (202), Expect = e-110
Identities = 300/332 (90%), Gaps = 4/332 (1%)
Strand = Plus / Minus
Query: 10338 agacgtcgcctctggtaagaaggactttttggacttttcatcaggtccattatggcattc 10397
||||||||||||||||||||| || |||||| ||||| |||||| |||||||||||| ||
Sbjct: 3169 agacgtcgcctctggtaagaa-gaatttttgaactttccatcagttccattatggcagtc 3111
Query: 10398 gctgaccacttgaccgctgttcgtgatggggctaacaggagccatctccgcattaagtaa 10457
||||||| | |||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 3110 gctgaccgcatgaccgttgttcgtgacggggctaataggagccatctccgcattaagtaa 3051
Query: 10458 agcaataactcgccaggcctactttcgttcctcacaaggctcccctgctcgctcatatcc 10517
|||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||
Sbjct: 3050 agcaataactcgccagacctactttcattcctcacaaagctcgcctgctcgctcatatcc 2991
Query: 10518 c---accgacgccataactcttgtctctgaggaagatctgctcgtacgcaataaattact 10574
| |||||||||| ||||| ||||||||||||||| | || |||||||| ||||||||
Sbjct: 2990 cgccaccgacgccacaactcacgtctctgaggaagatatacttgtacgcaacaaattact 2931
Query: 10575 gatgttgttcgagaagtgttttggtatgatgccaagagctaattaactcagaggatcact 10634
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 2930 gatgttgttcgagaggtgtttcggtatgatgccaagagctaattaactcagaggattact 2871
Query: 10635 atatcatcggggtgtacaggaatttgtacttg 10666
|||||| ||| |||||||||||| |||||||
Sbjct: 2870 gtatcattgggatgtacaggaattcgtacttg 2839
Score = 196 bits (99), Expect = 1e-48
Identities = 112/116 (96%), Gaps = 2/116 (1%)
Strand = Plus / Minus
Query: 8368 gaccgggaacgtacgagggaatggagacggcctttgagagcctgttgatgtagtcgtcct 8427
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5355 gaccggg-acgtacgagggaatggacacggcctttgagagcctgttgatgtagtcgtcct 5297
Query: 8428 tgtggtcgtcgac-gtactggaggaacttgggatcggccattgctgtgcttgtggg 8482
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5296 tgtggtcgtcgacagtactggaggaacttgggatcggccattgctgtgtttgtggg 5241
>Contig3997
Length = 12734
Score = 664 bits (335), Expect = 0.0
Identities = 401/423 (94%)
Strand = Plus / Minus
Query: 1282 accttgcgaatgtccaataaacccatcacgacgtcacctctgaccacttccttttcatct 1341
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1968 accttgcgaatgtccaataaacccatgacgacgtcacctctgaccacttccttttcatct 1909
Query: 1342 gttccaaccaccagcgccctccccacaaaactccttcccggcacatacttgcccacatcc 1401
|| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1908 gtaccgaccaccagcgccctgcccacaaaactccttccaggcacatacttgcccacatcc 1849
Query: 1402 cctcttcccttttcgtccacggcacgtacatccacttgatccaccgcaacagcataaacc 1461
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1848 cctcttcccttttcgtccacggcacgtacatccacttgatccaccgccacggcataaacc 1789
Query: 1462 tgtacgagcacttggttctttcccgtctttcctgggggttttgagtgagagctaaactct 1521
||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||
Sbjct: 1788 tgtacgagcacttggttctttcccgtcttaccaggaggttttgagtgagaactaaactct 1729
Query: 1522 acaaggggcgggagctggtcacggaggtgtgcgggggtagcgttgtggtggtcaaatgtg 1581
||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||
Sbjct: 1728 acaaggggcgggagctggtcacgaaggtgtgcgggggtagcgttatggtgatcgaatgtg 1669
Query: 1582 gaatggagtgtgatggatgccatggtggcgtgtggaagaccaaggatacgtgcgtctagg 1641
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 1668 gaatggagtgtgatggatgccatgctggcgtgtggaagaccaaggatacgggcgtctagg 1609
Query: 1642 tcgggcgctgatttggccgggtttgactgtttgtaagcgcccagaggtaaaatcaagttg 1701
|| || |||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 1608 tcaggtgctgatttagccgggtttgattgtttgtaagcgcccaaaggtaaaatcaagttg 1549
Query: 1702 cta 1704
|||
Sbjct: 1548 cta 1546
Score = 648 bits (327), Expect = 0.0
Identities = 412/440 (93%), Gaps = 2/440 (0%)
Strand = Plus / Minus
Query: 767 actcactttccgccactcttcaatgctctttttgcagtgtcatacaccctttgcccaccc 826
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 2498 actcactttccgccactcttcaatgctcttcgtgcagtgtcatacacccgttgcccacct 2439
Query: 827 tgggtgtcaaacacaaagtcatacccattttcctccagattgatcatcactgccgccgga 886
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2438 tgcgtatcaaacacaaagtcatatccattttcctccagattgatcatcactgccgccggc 2379
Query: 887 gaacccatgagcactcccttggccccattctcaatacacttt-tggtgagcctcatgcga 945
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct: 2378 gaacccatgagcactcccttggccccattttcaataca-tttctggtgagcctcatgcga 2320
Query: 946 gtcgtccccaccggggacgatagccgtcacgtatacacctgcgcgggacatgacctgaca 1005
||||||||| || |||| |||||||||||| || ||||||||||| ||||| ||||| ||
Sbjct: 2319 gtcgtccccgccagggatgatagccgtcacatagacacctgcgcgagacatcacctggca 2260
Query: 1006 gacgagtgcggcgataccagtatgggcgttgatgataatggcgcggaactggcgattgag 1065
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 2259 gacgagtgcggcgataccagtatgggcgttgatgacgatggcgcggaattggcgattgag 2200
Query: 1066 agagccacgaacgcatcgcgctgcagcgatgccttggagagggagaatcgagagttgttc 1125
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2199 agagccacggacgcatcgcgctgcagcgatgccttggagagggagaatagagagttgttc 2140
Query: 1126 gagtgtgagaagggtagggaatggtgctcgagagacacgtcgacggtcgacaagaatgta 1185
||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||
Sbjct: 2139 gagtgtgagaagggtagggaatggtgcacgagaaacacgtcgacgatccacaagaatgta 2080
Query: 1186 ctctgccaatgcgccgctct 1205
||||||||||||||||||||
Sbjct: 2079 ctctgccaatgcgccgctct 2060
Score = 563 bits (284), Expect = e-159
Identities = 351/373 (94%), Gaps = 1/373 (0%)
Strand = Plus / Minus
Query: 351 aaaaagcagaacactagttgataatcctcacgaccctcacgccacactcatcccatcctt 410
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2931 aaaaagcag-acactaattgataatcctcacgaccctcacgccacactcatcccatcctt 2873
Query: 411 ggcgtttaaagacatctgctcccctttcaaagggcaccactgcgttctcaccttccagca 470
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 2872 gacgtttaaagacctctgctcccctttcaaagggcaccactgcgctctcaccttccaaca 2813
Query: 471 ctggcctaaaggatgccatacacggttcctccatcacatcgcggcaatccatcccggatg 530
|||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 2812 ctggtctaaaggttgccatacacggttcctccatcacatcacggcagtccatcccggacg 2753
Query: 531 cgtcaatctctggctcaccagacccgatgggagagacgtattcaaaggcgataaactttg 590
||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||
Sbjct: 2752 cgtcaatctctggctcaccagacccaatgggggagacatattcaaaggagataaactttg 2693
Query: 591 agtctttgcgttttgaaccaaacactgttctcagtgtcttgatgcccgacgggcgggaag 650
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2692 aatctttgcgttttgaaccaaacactgttctcagtgtcttgatgccggacgggcgggaag 2633
Query: 651 ccaagtggggcgggacgcggttcagagttgtttcggggcgcttggtcgataccaatctac 710
|||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 2632 ccaaatggggcgggacgcggttcagagttgcttcgggccgcttggtcgataccaatctac 2573
Query: 711 agaatgcacattt 723
| ||| |||||||
Sbjct: 2572 aaaatacacattt 2560
Score = 299 bits (151), Expect = 1e-79
Identities = 214/234 (91%), Gaps = 5/234 (2%)
Strand = Plus / Minus
Query: 4 ttgatagatctccagtcatagggcctctagtccggcgcacaagaagtgcaaggtttttag 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3284 ttgatagatctccagtcatagggcctctggtccggcgcacaagaagtgcaaggtttttag 3225
Query: 64 ggcgaagctggggtagttctacagggagagaagttgatggggaagcagagctcgggcaag 123
|||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||| |
Sbjct: 3224 ggcgaagctgggatagttctgtagggggagaagttgatggggaagcagagctggggcagg 3165
Query: 124 cgggcagtagtatcggacgagattggtgtacaagagagatggatgaaggg-tatgggacg 182
||||| ||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||
Sbjct: 3164 cgggcggtagtgtcggacgaggtcggtgtacaagagagatggatga-gggatatgggact 3106
Query: 183 tttaatgattgatgac-att-gtatcgattttgtacaagtatcttg-gactgtt 233
||||||||||||| | ||| ||| ||||||||||||||||||||| |||||||
Sbjct: 3105 tttaatgattgattaagatttgtaacgattttgtacaagtatcttgagactgtt 3052
Score = 293 bits (148), Expect = 7e-78
Identities = 179/189 (94%), Gaps = 2/189 (1%)
Strand = Plus / Minus
Query: 1755 actcacgtgtacccaggagcactttcttgatcccttccatgcgattccatcaacatc-cc 1813
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||
Sbjct: 1502 actcacgtgtacccaggagcactctcttgatcccttccatgcgactccatcaaca-cacc 1444
Query: 1814 atcaccatacgaactcccttcccactttgacccgcctgtaaatctatacccagcagcgct 1873
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 1443 atcaccatacgaactcccttcccactttgacccgcctccaaacctatacccagcagcgct 1384
Query: 1874 cttcgacctcttgatcatggacggtaaaggcaattcagccaatccatcatctttttcgcc 1933
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 1383 ctttgacctcttgatcatggacggtaaaggcaattcagccaatccatcatcttcttcccc 1324
Query: 1934 tgcctcact 1942
|||||||||
Sbjct: 1323 tgcctcact 1315
Score = 252 bits (127), Expect = 2e-65
Identities = 220/250 (88%), Gaps = 6/250 (2%)
Strand = Plus / Minus
Query: 1969 gaccgtggccgacttcgctcctcgagcctctaaagatgctagactttctcgaatgcgaca 2028
|||||||||| ||||| ||| |||||||||| || | ||||||| || ||||||||||||
Sbjct: 1279 gaccgtggcccacttcactcttcgagcctctgaatacgctagaccttgtcgaatgcgaca 1220
Query: 2029 aatgtcctcctccattatcgtggtacatggataaccttgagcggctcctctcgggagggg 2088
| || | || ||||||||||| |||| ||||||||| ||||| |||||||||||||| |
Sbjct: 1219 actg--c-ccaccattatcgtgatacacggataacctcgagcgactcctctcgggaggtg 1163
Query: 2089 gtgaaga---gcgatagagacgttcagagtcttggggggtcatctctggaaggatggtga 2145
||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct: 1162 gtgaagaggggcgatagagacgttcagagtcttgcggcgtcatttctggaaggatggtga 1103
Query: 2146 ggatgtcggggtccaggaaggaaggcggttcaaaccctgcccgcggagttgttggacgtg 2205
|||||||||||||||||||||| || ||||| ||||||||||| || |||||||| ||||
Sbjct: 1102 ggatgtcggggtccaggaaggaggggggttcgaaccctgcccggggggttgttgggcgtg 1043
Query: 2206 tagggatagg 2215
||||||||||
Sbjct: 1042 tagggatagg 1033
Score = 143 bits (72), Expect = 1e-32
Identities = 90/96 (93%)
Strand = Plus / Minus
Query: 2279 tgagggagatgtaggacgagagtattgagagagacggccaggtgatgacgatgatggggg 2338
|||||||||||||||||||||||||||||||||||| | ||| |||||| |||| |||||
Sbjct: 960 tgagggagatgtaggacgagagtattgagagagacgacaaggcgatgacaatgacggggg 901
Query: 2339 taaaggcgatggggtccttggcggatagacgggagc 2374
|||||||||||||||||||||||| |||||||||||
Sbjct: 900 taaaggcgatggggtccttggcgggtagacgggagc 865
Score = 121 bits (61), Expect = 5e-26
Identities = 142/168 (84%), Gaps = 5/168 (2%)
Strand = Plus / Minus
Query: 3164 ttcgtcatctgagcctgcttggcctgatgcactctccatatcctcgtcgtcctttgaagg 3223
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| | |||
Sbjct: 165 ttcgtcgtctgagcctgcttggcctgatgcactctccatatcgtcgtcatccttgggagg 106
Query: 3224 aagaggcggcggctgttccg-ccgtgttgcgaggggggttgattactctaggtgcaagag 3282
|||||| || || | |||| || |||||||||||||| |||| || ||| |||| || |
Sbjct: 105 aagaggtggaggtt-ttcccaccatgttgcgaggggggatgatcaccctaagtgccag-g 48
Query: 3283 -tgggacgagaggtggtatgcggtaggtggtcgggatggagggcggat 3329
|||| | ||||||||||| |||||| ||||| ||||| |||| ||||
Sbjct: 47 ctggggccagaggtggtat-cggtagatggtctggatgaagggaggat 1
Score = 103 bits (52), Expect = 1e-20
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 3041 gtgcgaacgccgcgacgaggagcgaatggactgtgctctgctacaaggccgggaagacga 3100
|||||| |||||||| |||||||||||||||||||||||||||||||||| ||| || ||
Sbjct: 273 gtgcgagcgccgcgatgaggagcgaatggactgtgctctgctacaaggcctggaggaaga 214
Query: 3101 tttgggagtgcgtgag 3116
||||||||||| ||||
Sbjct: 213 tttgggagtgcatgag 198
>Contig634
Length = 858
Score = 486 bits (245), Expect = e-136
Identities = 304/323 (94%), Gaps = 3/323 (0%)
Strand = Plus / Minus
Query: 7620 tatatatatacgtaccagaaatacacatgcagtcaacaccggcgaaaaacttgtcctttt 7679
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tatatat-tacgtaccagaaatgcacatgcagtcaacaccggcgaagaacttgtcctttt 263
Query: 7680 cagattcaataaacttgtccaggttgacagaaccattctcctccataccctcaaaacaga 7739
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagattcaataaacttgtcaaggttgacagaaccattctcctccataccctcaaaacaga 203
Query: 7740 ctttgaggttgacaggaagctcgataccaagcttcttgtgcgcctcgaggacgtttaacc 7799
||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 202 ctttgagattgacaggaagctcaataccaagcttcttatgcgcctcgagaacgttcaacc 143
Query: 7800 agcccatgactggacccttgtcatcggttgagccacggccgtaaagtcggccactgccgt 7859
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 142 agcccatgacaggacccttgtcatccgttgagccacggccgtagagtcggccactgccgt 83
Query: 7860 tgggatcgggggtgagctcaaagggagggtagagccagccgtcttcgagtaga-gcgggt 7918
||||||| |||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct: 82 tgggatccggggtgagctcaaacggagggtagagccagccgtcttcgagca-atgcgggt 24
Query: 7919 tggacatcgtagtggccatagac 7941
||||| ||||||||||| |||||
Sbjct: 23 tggacgtcgtagtggccgtagac 1
Score = 291 bits (147), Expect = 3e-77
Identities = 162/167 (97%)
Strand = Plus / Minus
Query: 7410 cttactgagagcgataagatccgtcatcggttcgtggacggtaccgccaaagacaccaga 7469
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttactgagagcgacaaggtccgtcatcggttcgtggacggtaccgccaaagacaccaga 481
Query: 7470 gtgaagatccctgtcaggcccagaaatcttgatctcgtaatagttgatacctctgagacc 7529
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtggagatccctgtcaggcccagaaatcttgatctcgtaatagttgatacctctgagacc 421
Query: 7530 ataagtgagacagggggtcttggtgtcaagccagtaattgtctatat 7576
|||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 420 ataagtgagacacggggtcttggtgtcaagccagtagttgtctatat 374
Score = 224 bits (113), Expect = 5e-57
Identities = 183/206 (88%), Gaps = 2/206 (0%)
Strand = Plus / Minus
Query: 7180 aaacccacagtcgtaacagtgtcgtcggagatggtgacctcaccaccaacagc-ggcatg 7238
|||| ||||||| |||| || ||| | || |||||||| |||||||| ||||| |||||
Sbjct: 783 aaactcacagtcttaacggtatcgcccgatatggtgacttcaccaccgacagcatgcatg 724
Query: 7239 aatatcttccatctggaagtggatagcctcaaacttggctcgctcatcgtcggtgacagg 7298
|||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 723 aatatcttgcatctcgaaatggatagcttcaaacttggctcgctcatcgtcggtgacagg 664
Query: 7299 cgcgatgaggtccttgataccggtaacgaggatctggccgtcgggagtgacaagcttgga 7358
|||||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||
Sbjct: 663 ggcgatgaggtccttgacaccgctaacgaggatctggccgtcgggagtaacaagcctgga 604
Query: 7359 cactatatataacactcgtcagctct 7384
||||| ||| |||||| |||||||||
Sbjct: 603 cactagata-aacacttgtcagctct 579
>Contig1853
Length = 2314
Score = 339 bits (171), Expect = 1e-91
Identities = 204/215 (94%)
Strand = Plus / Plus
Query: 6406 aaatactcactcggatgtagttgtcagtgtcaatcttctcgttggtggaatgagctccgt 6465
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 aaatacgcactcggatgtagttgtcagtgtcaatcttctcgttggtggaatgagctccgt 1750
Query: 6466 catcaccccttccgacaggtaacaaaaggacgttgaggttgagaatgttggcaaagtcga 6525
||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct: 1751 catcaccccttccgacaggcaacaggaggacattgaggttgagaatgttggcaaagtcga 1810
Query: 6526 gggtgacagggatagaaccgccttcacgggtgtagtcgggcacttggccgtaaacagact 6585
| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
Sbjct: 1811 gagtgacagggatggaaccgccttcacgggtgtaatcaggcacttggccgtaaacagatt 1870
Query: 6586 cggtagccttgtgcgccgctcgataagagtagtgc 6620
||||||||||||||||||| |||||||||||||||
Sbjct: 1871 cggtagccttgtgcgccgcacgataagagtagtgc 1905
Score = 285 bits (144), Expect = 2e-75
Identities = 243/274 (88%), Gaps = 11/274 (4%)
Strand = Plus / Plus
Query: 6630 ggtcagtctttatcatccacttgcatt-gttgccaaccgtgctcacattggggtcagcct 6688
||||||||||||| || |||||||||| || |||| | ||||||| |||||||||||||
Sbjct: 1933 ggtcagtctttat-at-cacttgcattattttccaatcatgctcacgttggggtcagcct 1990
Query: 6689 gaaag-aaaacgattgtcagcc---tctttacattcatcaa-cactcgccgggggcataa 6743
||||| ||||| |||||||||| | |||||||||||||| || || || |||| | |
Sbjct: 1991 gaaagcaaaaccattgtcagccttttttttacattcatcaacca-tc-cc-ggggaacca 2047
Query: 6744 ctcacaatccaaggctcaccaccgtgagtgagatacacctccatcttgttcttggaacca 6803
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 2048 ctcacaatccaaggctcaccgccatgagtaagatacacctccatcttgttcttggaacca 2107
Query: 6804 agttttttgaattcttcctcaacgtacttgacgacgaggtcagtcacactggcaacagtg 6863
||||| ||||| ||||||||||||||||||||||| ||||| || || ||||| ||||||
Sbjct: 2108 agtttcttgaactcttcctcaacgtacttgacgacaaggtcggtgacgctggcgacagtg 2167
Query: 6864 aggttgggtacaagacggatagagaatttgccta 6897
||||||||||||||||||||||||||||||||||
Sbjct: 2168 aggttgggtacaagacggatagagaatttgccta 2201
Score = 71.9 bits (36), Expect = 5e-11
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 6963 acccttgacacagcagggaatcacagtcttggaacc 6998
||||||||||||||||||||||||||||||||||||
Sbjct: 2277 acccttgacacagcagggaatcacagtcttggaacc 2312
Database: cneoA.nt
Posted date: Dec 12, 2002 3:26 PM
Number of letters in database: 17,206,226
Number of sequences in database: 4935
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 0, Extension: 0
Number of Hits to DB: 9213
Number of Sequences: 4935
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 1.0e-01: 4
length of query: 11337
length of database: 17,206,226
effective HSP length: 19
effective length of query: 11318
effective length of database: 17,112,461
effective search space: 193678833598
effective search space used: 0
S2: 21 (42.1 bits)
|
