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YN00 examples/small_taxon_set.nuc
ns = 9 ls = 475
Codon position x base (3x4) table for each sequence.
Pdel181_DNA2
position 1: T:0.18105 C:0.19368 A:0.23579 G:0.38947
position 2: T:0.26526 C:0.23158 A:0.30105 G:0.20211
position 3: T:0.41895 C:0.15579 A:0.28211 G:0.14316
Pfre186_DNA2
position 1: T:0.18105 C:0.19368 A:0.23789 G:0.38737
position 2: T:0.26526 C:0.23158 A:0.30105 G:0.20211
position 3: T:0.41895 C:0.15579 A:0.28211 G:0.14316
Pgra187_DNA2
position 1: T:0.18105 C:0.19158 A:0.24000 G:0.38737
position 2: T:0.26316 C:0.23158 A:0.30105 G:0.20421
position 3: T:0.42105 C:0.15158 A:0.28632 G:0.14105
Phet26_DNA21
position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
Pmex37_DNA21
position 1: T:0.18105 C:0.19158 A:0.23789 G:0.38947
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
position 3: T:0.41895 C:0.15789 A:0.28211 G:0.14105
Ptre197_DNA2
position 1: T:0.18105 C:0.19158 A:0.24000 G:0.38737
position 2: T:0.26316 C:0.23158 A:0.30105 G:0.20421
position 3: T:0.42316 C:0.15158 A:0.28421 G:0.14105
WHR1_DNA225
position 1: T:0.18105 C:0.19158 A:0.23579 G:0.39158
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
position 3: T:0.41684 C:0.15579 A:0.28211 G:0.14526
YALD273_DNA5
position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
Pop_trich_ch
position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
Average
position 1: T:0.18105 C:0.19275 A:0.23649 G:0.38971
position 2: T:0.26480 C:0.23041 A:0.30105 G:0.20374
position 3: T:0.41942 C:0.15579 A:0.28421 G:0.14058
Codon usage for each species
--------------------------------------------------------------------------------------------------------------
Phe TTT 14 14 14 14 14 14 | Ser TCT 6 6 6 6 6 6 | Tyr TAT 13 13 13 13 13 13 | Cys TGT 5 5 5 5 5 5
TTC 8 8 8 8 8 8 | TCC 4 4 4 4 4 4 | TAC 4 4 4 4 4 4 | TGC 3 3 3 3 3 3
Leu TTA 9 9 9 9 9 9 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 10 10 10 10 10 10 | TCG 1 1 1 1 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 8 8 8 8 8 8
--------------------------------------------------------------------------------------------------------------
Leu CTT 9 9 9 9 9 9 | Pro CCT 11 11 12 11 10 12 | His CAT 9 9 9 9 9 9 | Arg CGT 11 11 11 11 11 11
CTC 0 0 0 0 0 0 | CCC 6 6 5 6 6 5 | CAC 5 5 5 5 5 5 | CGC 5 5 5 5 5 5
CTA 9 9 9 10 9 9 | CCA 3 3 3 3 3 3 | Gln CAA 10 10 9 10 10 9 | CGA 6 6 6 6 6 6
CTG 4 4 4 3 4 4 | CCG 2 2 2 2 2 2 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------
Ile ATT 10 11 10 10 11 10 | Thr ACT 17 17 18 16 17 18 | Asn AAT 9 9 9 9 9 9 | Ser AGT 1 1 2 2 2 2
ATC 9 9 7 9 9 8 | ACC 8 8 8 8 8 8 | AAC 6 6 6 6 6 6 | AGC 3 3 3 3 3 3
ATA 1 1 4 2 1 3 | ACA 6 6 5 5 5 5 | Lys AAA 18 18 18 18 18 18 | Arg AGA 6 6 6 6 6 6
Met ATG 10 10 10 9 10 10 | ACG 1 1 1 1 1 1 | AAG 6 6 6 6 6 6 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------
Val GTT 15 14 14 15 14 14 | Ala GCT 24 24 23 24 24 24 | Asp GAT 22 22 22 22 22 22 | Gly GGT 23 23 23 23 23 23
GTC 1 1 1 1 1 1 | GCC 5 5 5 5 5 4 | GAC 5 5 6 6 6 6 | GGC 2 2 2 2 2 2
GTA 13 13 12 13 13 12 | GCA 15 15 16 16 16 16 | Glu GAA 24 24 25 24 24 25 | GGA 13 13 13 13 13 13
GTG 4 4 4 4 4 4 | GCG 0 0 0 0 0 0 | GAG 10 10 9 9 9 9 | GGG 9 9 9 9 9 9
--------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------
Phe TTT 14 14 14 | Ser TCT 5 6 6 | Tyr TAT 13 13 13 | Cys TGT 5 5 5
TTC 8 8 8 | TCC 5 4 4 | TAC 4 4 4 | TGC 3 3 3
Leu TTA 9 9 9 | TCA 1 1 1 | *** TAA 0 0 0 | *** TGA 0 0 0
TTG 10 10 10 | TCG 1 1 1 | TAG 0 0 0 | Trp TGG 8 8 8
--------------------------------------------------------------------------
Leu CTT 9 9 9 | Pro CCT 10 11 11 | His CAT 9 9 9 | Arg CGT 11 11 11
CTC 0 0 0 | CCC 6 6 6 | CAC 5 5 5 | CGC 5 5 5
CTA 9 10 10 | CCA 3 3 3 | Gln CAA 10 10 10 | CGA 6 6 6
CTG 4 3 3 | CCG 2 2 2 | CAG 2 2 2 | CGG 0 0 0
--------------------------------------------------------------------------
Ile ATT 10 10 10 | Thr ACT 17 16 16 | Asn AAT 9 9 9 | Ser AGT 2 2 2
ATC 8 9 9 | ACC 8 8 8 | AAC 6 6 6 | AGC 3 3 3
ATA 2 2 2 | ACA 5 5 5 | Lys AAA 18 18 18 | Arg AGA 6 6 6
Met ATG 10 9 9 | ACG 1 1 1 | AAG 6 6 6 | AGG 1 1 1
--------------------------------------------------------------------------
Val GTT 15 15 15 | Ala GCT 24 24 24 | Asp GAT 22 22 22 | Gly GGT 23 23 23
GTC 1 1 1 | GCC 5 5 5 | GAC 5 6 6 | GGC 2 2 2
GTA 13 13 13 | GCA 15 16 16 | Glu GAA 24 24 24 | GGA 13 13 13
GTG 4 4 4 | GCG 1 0 0 | GAG 10 9 9 | GGG 9 9 9
--------------------------------------------------------------------------
Sums
--------------------------------------------------
Phe TTT 126 | Ser TCT 53 | Tyr TAT 117 | Cys TGT 45
TTC 72 | TCC 37 | TAC 36 | TGC 27
Leu TTA 81 | TCA 9 | *** TAA 0 | *** TGA 0
TTG 90 | TCG 9 | TAG 0 | Trp TGG 72
--------------------------------------------------
Leu CTT 81 | Pro CCT 99 | His CAT 81 | Arg CGT 99
CTC 0 | CCC 52 | CAC 45 | CGC 45
CTA 84 | CCA 27 | Gln CAA 88 | CGA 54
CTG 33 | CCG 18 | CAG 18 | CGG 0
--------------------------------------------------
Ile ATT 92 | Thr ACT 152 | Asn AAT 81 | Ser AGT 16
ATC 77 | ACC 72 | AAC 54 | AGC 27
ATA 18 | ACA 47 | Lys AAA 162 | Arg AGA 54
Met ATG 87 | ACG 9 | AAG 54 | AGG 9
--------------------------------------------------
Val GTT 131 | Ala GCT 215 | Asp GAT 198 | Gly GGT 207
GTC 9 | GCC 44 | GAC 51 | GGC 18
GTA 115 | GCA 141 | Glu GAA 218 | GGA 117
GTG 36 | GCG 1 | GAG 84 | GGG 81
--------------------------------------------------
(A) Nei-Gojobori (1986) method
Nei & Gojobori 1986. dN/dS (dN, dS)
(Note: This matrix is not used in later ML. analysis.
Use runmode = -2 for ML pairwise comparison.)
Pdel181_DNA2
Pfre186_DNA2 -1.0000 (0.0009 0.0000)
Pgra187_DNA2 1.0623 (0.0093 0.0088) 1.1684 (0.0102 0.0088)
Phet26_DNA21 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)
Pmex37_DNA21 -1.0000 (0.0046 0.0000)-1.0000 (0.0037 0.0000) 0.9534 (0.0084 0.0088) 0.9555 (0.0028 0.0029)
Ptre197_DNA2 1.5965 (0.0093 0.0058) 1.7561 (0.0102 0.0058) 0.0000 (0.0000 0.0088) 0.6357 (0.0056 0.0088) 1.4328 (0.0084 0.0058)
WHR1_DNA225 0.7964 (0.0046 0.0058) 0.9557 (0.0056 0.0058) 0.4430 (0.0065 0.0147) 0.3175 (0.0028 0.0088) 0.6354 (0.0037 0.0058) 0.5548 (0.0065 0.0117)
YALD273_DNA5 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)-1.0000 (0.0000 0.0000) 0.9555 (0.0028 0.0029) 0.6357 (0.0056 0.0088) 0.3175 (0.0028 0.0088)
Pop_trich_ch 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)-1.0000 (0.0000 0.0000) 0.9555 (0.0028 0.0029) 0.6357 (0.0056 0.0088) 0.3175 (0.0028 0.0088)-1.0000 (0.0000 0.0000)
(B) Yang & Nielsen (2000) method
Yang Z, Nielsen R (2000) Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17:32-43
(equal weighting of pathways)
seq. seq. S N t kappa omega dN +- SE dS +- SE
2 1 337.9 1087.1 0.0021 4.2358 99.0000 0.0009 +- 0.0009 -0.0000 +- 0.0000
3 1 335.1 1089.9 0.0276 4.2358 1.0246 0.0092 +- 0.0029 0.0090 +- 0.0052
3 2 334.8 1090.2 0.0297 4.2358 1.1268 0.0102 +- 0.0031 0.0090 +- 0.0052
4 1 337.9 1087.1 0.0106 4.2358 1.2441 0.0037 +- 0.0018 0.0030 +- 0.0030
4 2 337.6 1087.4 0.0127 4.2358 1.5546 0.0046 +- 0.0021 0.0030 +- 0.0030
4 3 334.8 1090.2 0.0212 4.2358 0.4581 0.0055 +- 0.0023 0.0121 +- 0.0061
5 1 338.1 1086.9 0.0106 4.2358 99.0000 0.0046 +- 0.0021 -0.0000 +- 0.0000
5 2 337.8 1087.2 0.0084 4.2358 99.0000 0.0037 +- 0.0018 -0.0000 +- 0.0000
5 3 335.0 1090.0 0.0254 4.2358 0.9214 0.0083 +- 0.0028 0.0090 +- 0.0052
5 4 337.8 1087.2 0.0084 4.2358 0.9322 0.0028 +- 0.0016 0.0030 +- 0.0030
6 1 334.8 1090.2 0.0254 4.2358 1.5397 0.0092 +- 0.0029 0.0060 +- 0.0042
6 2 334.5 1090.5 0.0276 4.2358 1.6932 0.0102 +- 0.0031 0.0060 +- 0.0042
6 3 331.7 1093.3 0.0064 4.2358 0.0000 -0.0000 +- 0.0000 0.0091 +- 0.0053
6 4 334.5 1090.5 0.0190 4.2358 0.6124 0.0055 +- 0.0023 0.0090 +- 0.0052
6 5 334.7 1090.3 0.0233 4.2358 1.3847 0.0083 +- 0.0028 0.0060 +- 0.0042
7 1 338.8 1086.2 0.0148 4.2358 0.7790 0.0046 +- 0.0021 0.0059 +- 0.0042
7 2 338.5 1086.5 0.0169 4.2358 0.9344 0.0055 +- 0.0023 0.0059 +- 0.0042
7 3 335.7 1089.3 0.0255 4.2358 0.4278 0.0065 +- 0.0024 0.0151 +- 0.0068
7 4 338.5 1086.5 0.0127 4.2358 0.3104 0.0028 +- 0.0016 0.0089 +- 0.0052
7 5 338.7 1086.3 0.0127 4.2358 0.6226 0.0037 +- 0.0018 0.0059 +- 0.0042
7 6 335.4 1089.6 0.0233 4.2358 0.5368 0.0065 +- 0.0024 0.0120 +- 0.0060
8 1 337.9 1087.1 0.0106 4.2358 1.2441 0.0037 +- 0.0018 0.0030 +- 0.0030
8 2 337.6 1087.4 0.0127 4.2358 1.5546 0.0046 +- 0.0021 0.0030 +- 0.0030
8 3 334.8 1090.2 0.0212 4.2358 0.4581 0.0055 +- 0.0023 0.0121 +- 0.0061
8 4 337.6 1087.4 -0.0000 4.2358 99.0000 -0.0000 +- 0.0000 -0.0000 +- 0.0000
8 5 337.8 1087.2 0.0084 4.2358 0.9322 0.0028 +- 0.0016 0.0030 +- 0.0030
8 6 334.5 1090.5 0.0190 4.2358 0.6124 0.0055 +- 0.0023 0.0090 +- 0.0052
8 7 338.5 1086.5 0.0127 4.2358 0.3104 0.0028 +- 0.0016 0.0089 +- 0.0052
9 1 337.9 1087.1 0.0106 4.2358 1.2441 0.0037 +- 0.0018 0.0030 +- 0.0030
9 2 337.6 1087.4 0.0127 4.2358 1.5546 0.0046 +- 0.0021 0.0030 +- 0.0030
9 3 334.8 1090.2 0.0212 4.2358 0.4581 0.0055 +- 0.0023 0.0121 +- 0.0061
9 4 337.6 1087.4 -0.0000 4.2358 99.0000 -0.0000 +- 0.0000 -0.0000 +- 0.0000
9 5 337.8 1087.2 0.0084 4.2358 0.9322 0.0028 +- 0.0016 0.0030 +- 0.0030
9 6 334.5 1090.5 0.0190 4.2358 0.6124 0.0055 +- 0.0023 0.0090 +- 0.0052
9 7 338.5 1086.5 0.0127 4.2358 0.3104 0.0028 +- 0.0016 0.0089 +- 0.0052
9 8 337.6 1087.4 -0.0000 4.2358 99.0000 -0.0000 +- 0.0000 -0.0000 +- 0.0000
(C) LWL85, LPB93 & LWLm methods
Li W.-H., C.-I. Wu, Luo (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitutions considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2: 150-174.
Li W-H (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36:96-99
Pamilo P, Bianchi NO (1993) Evolution of the Zfx and Zfy genes - rates and interdependence between the genes. Mol. Biol. Evol. 10:271-281
Yang Z (2006) Computational Molecular Evolution. Oxford University Press, Oxford. Eqs. 2.12 & 2.13
2 (Pfre186_DNA2) vs. 1 (Pdel181_DNA2)
L(i): 923.0 268.5 233.5 sum= 1425.0
Ns(i): 1.0000 0.0000 0.0000 sum= 1.0000
Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
A(i): 0.0011 0.0000 0.0000
B(i): -0.0000 -0.0000 -0.0000
LWL85: dS = 0.0000 dN = 0.0009 w = inf S = 323.0 N = 1102.0
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
LPB93: dS = 0.0000 dN = 0.0011 w = inf
3 (Pgra187_DNA2) vs. 1 (Pdel181_DNA2)
L(i): 923.0 269.0 233.0 sum= 1425.0
Ns(i): 5.5000 1.5000 1.0000 sum= 8.0000
Nv(i): 2.5000 2.5000 0.0000 sum= 5.0000
A(i): 0.0060 0.0056 0.0043
B(i): 0.0027 0.0094 -0.0000
LWL85: dS = 0.0078 dN = 0.0096 w = 1.2280 S = 322.7 N = 1102.3
LWL85m: dS = 0.0050 dN = 0.0115 w = 2.2818 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0050 dN = 0.0102 w = 2.0369
3 (Pgra187_DNA2) vs. 2 (Pfre186_DNA2)
L(i): 923.0 269.5 232.5 sum= 1425.0
Ns(i): 6.5000 1.5000 1.0000 sum= 9.0000
Nv(i): 2.5000 2.5000 0.0000 sum= 5.0000
A(i): 0.0071 0.0056 0.0043
B(i): 0.0027 0.0094 -0.0000
LWL85: dS = 0.0078 dN = 0.0105 w = 1.3442 S = 322.3 N = 1102.7
LWL85m: dS = 0.0050 dN = 0.0126 w = 2.5010 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0050 dN = 0.0113 w = 2.2557
4 (Phet26_DNA21) vs. 1 (Pdel181_DNA2)
L(i): 922.5 269.0 233.5 sum= 1425.0
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
A(i): 0.0016 0.0019 0.0043
B(i): 0.0011 0.0037 -0.0000
LWL85: dS = 0.0047 dN = 0.0032 w = 0.6832 S = 323.2 N = 1101.8
LWL85m: dS = 0.0030 dN = 0.0038 w = 1.2689 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0030 dN = 0.0033 w = 1.1052
4 (Phet26_DNA21) vs. 2 (Pfre186_DNA2)
L(i): 922.5 269.5 233.0 sum= 1425.0
Ns(i): 2.5000 0.5000 1.0000 sum= 4.0000
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
A(i): 0.0027 0.0019 0.0043
B(i): 0.0011 0.0037 -0.0000
LWL85: dS = 0.0047 dN = 0.0041 w = 0.8779 S = 322.8 N = 1102.2
LWL85m: dS = 0.0030 dN = 0.0049 w = 1.6325 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0030 dN = 0.0044 w = 1.4686
4 (Phet26_DNA21) vs. 3 (Pgra187_DNA2)
L(i): 922.5 270.0 232.5 sum= 1425.0
Ns(i): 4.0000 1.0000 2.0000 sum= 7.0000
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
A(i): 0.0044 0.0037 0.0087
B(i): 0.0016 0.0056 -0.0000
LWL85: dS = 0.0094 dN = 0.0064 w = 0.6803 S = 322.5 N = 1102.5
LWL85m: dS = 0.0060 dN = 0.0076 w = 1.2668 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0060 dN = 0.0069 w = 1.1440
5 (Pmex37_DNA21) vs. 1 (Pdel181_DNA2)
L(i): 923.0 269.0 233.0 sum= 1425.0
Ns(i): 2.0000 0.0000 0.0000 sum= 2.0000
Nv(i): 2.0000 1.0000 0.0000 sum= 3.0000
A(i): 0.0022 -0.0000 0.0000
B(i): 0.0022 0.0037 -0.0000
LWL85: dS = -0.0000 dN = 0.0046 w =-1568.0041 S = 322.7 N = 1102.3
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
LPB93: dS = -0.0000 dN = 0.0047 w =-2519.1394
5 (Pmex37_DNA21) vs. 2 (Pfre186_DNA2)
L(i): 923.0 269.5 232.5 sum= 1425.0
Ns(i): 1.0000 0.0000 0.0000 sum= 1.0000
Nv(i): 2.0000 1.0000 0.0000 sum= 3.0000
A(i): 0.0011 -0.0000 0.0000
B(i): 0.0022 0.0037 -0.0000
LWL85: dS = -0.0000 dN = 0.0036 w =-1254.3509 S = 322.3 N = 1102.7
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
LPB93: dS = -0.0000 dN = 0.0036 w =-1938.1612
5 (Pmex37_DNA21) vs. 3 (Pgra187_DNA2)
L(i): 923.0 270.0 232.0 sum= 1425.0
Ns(i): 5.5000 1.5000 1.0000 sum= 8.0000
Nv(i): 2.5000 1.5000 0.0000 sum= 4.0000
A(i): 0.0060 0.0056 0.0043
B(i): 0.0027 0.0056 -0.0000
LWL85: dS = 0.0078 dN = 0.0087 w = 1.1081 S = 322.0 N = 1103.0
LWL85m: dS = 0.0050 dN = 0.0104 w = 2.0644 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0050 dN = 0.0094 w = 1.8682
5 (Pmex37_DNA21) vs. 4 (Phet26_DNA21)
L(i): 922.5 270.0 232.5 sum= 1425.0
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
Nv(i): 1.0000 0.0000 0.0000 sum= 1.0000
A(i): 0.0016 0.0019 0.0043
B(i): 0.0011 -0.0000 -0.0000
LWL85: dS = 0.0047 dN = 0.0023 w = 0.4868 S = 322.5 N = 1102.5
LWL85m: dS = 0.0030 dN = 0.0027 w = 0.9065 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0030 dN = 0.0025 w = 0.8244
6 (Ptre197_DNA2) vs. 1 (Pdel181_DNA2)
L(i): 923.0 269.0 233.0 sum= 1425.0
Ns(i): 5.5000 0.5000 2.0000 sum= 8.0000
Nv(i): 2.5000 1.5000 0.0000 sum= 4.0000
A(i): 0.0060 0.0019 0.0087
B(i): 0.0027 0.0056 -0.0000
LWL85: dS = 0.0078 dN = 0.0087 w = 1.1111 S = 322.7 N = 1102.3
LWL85m: dS = 0.0050 dN = 0.0104 w = 2.0645 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0050 dN = 0.0094 w = 1.8688
6 (Ptre197_DNA2) vs. 2 (Pfre186_DNA2)
L(i): 923.0 269.5 232.5 sum= 1425.0
Ns(i): 6.5000 0.5000 2.0000 sum= 9.0000
Nv(i): 2.5000 1.5000 0.0000 sum= 4.0000
A(i): 0.0071 0.0019 0.0087
B(i): 0.0027 0.0056 -0.0000
LWL85: dS = 0.0078 dN = 0.0096 w = 1.2275 S = 322.3 N = 1102.7
LWL85m: dS = 0.0050 dN = 0.0115 w = 2.2838 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0050 dN = 0.0105 w = 2.0879
6 (Ptre197_DNA2) vs. 3 (Pgra187_DNA2)
L(i): 923.0 270.0 232.0 sum= 1425.0
Ns(i): 0.0000 1.0000 1.0000 sum= 2.0000
Nv(i): 0.0000 1.0000 0.0000 sum= 1.0000
A(i): 0.0000 0.0037 0.0043
B(i): -0.0000 0.0037 -0.0000
LWL85: dS = 0.0062 dN = 0.0009 w = 0.1457 S = 322.0 N = 1103.0
LWL85m: dS = 0.0040 dN = 0.0011 w = 0.2715 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0040 dN = 0.0008 w = 0.2100
6 (Ptre197_DNA2) vs. 4 (Phet26_DNA21)
L(i): 922.5 270.0 232.5 sum= 1425.0
Ns(i): 4.0000 0.0000 3.0000 sum= 7.0000
Nv(i): 1.5000 0.5000 0.0000 sum= 2.0000
A(i): 0.0044 -0.0000 0.0131
B(i): 0.0016 0.0019 -0.0000
LWL85: dS = 0.0094 dN = 0.0055 w = 0.5801 S = 322.5 N = 1102.5
LWL85m: dS = 0.0060 dN = 0.0065 w = 1.0802 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0060 dN = 0.0060 w = 0.9989
6 (Ptre197_DNA2) vs. 5 (Pmex37_DNA21)
L(i): 923.0 270.0 232.0 sum= 1425.0
Ns(i): 5.5000 0.5000 2.0000 sum= 8.0000
Nv(i): 2.5000 0.5000 0.0000 sum= 3.0000
A(i): 0.0060 0.0019 0.0087
B(i): 0.0027 0.0019 -0.0000
LWL85: dS = 0.0078 dN = 0.0078 w = 0.9913 S = 322.0 N = 1103.0
LWL85m: dS = 0.0050 dN = 0.0093 w = 1.8469 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0050 dN = 0.0085 w = 1.6999
7 (WHR1_DNA225) vs. 1 (Pdel181_DNA2)
L(i): 923.0 268.5 233.5 sum= 1425.0
Ns(i): 1.5000 0.5000 2.0000 sum= 4.0000
Nv(i): 2.5000 0.5000 0.0000 sum= 3.0000
A(i): 0.0016 0.0019 0.0086
B(i): 0.0027 0.0019 -0.0000
LWL85: dS = 0.0078 dN = 0.0041 w = 0.5251 S = 323.0 N = 1102.0
LWL85m: dS = 0.0050 dN = 0.0049 w = 0.9743 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0050 dN = 0.0042 w = 0.8280
7 (WHR1_DNA225) vs. 2 (Pfre186_DNA2)
L(i): 923.0 269.0 233.0 sum= 1425.0
Ns(i): 2.5000 0.5000 2.0000 sum= 5.0000
Nv(i): 2.5000 0.5000 0.0000 sum= 3.0000
A(i): 0.0027 0.0019 0.0087
B(i): 0.0027 0.0019 -0.0000
LWL85: dS = 0.0078 dN = 0.0050 w = 0.6414 S = 322.7 N = 1102.3
LWL85m: dS = 0.0050 dN = 0.0060 w = 1.1918 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0050 dN = 0.0052 w = 1.0452
7 (WHR1_DNA225) vs. 3 (Pgra187_DNA2)
L(i): 923.0 269.5 232.5 sum= 1425.0
Ns(i): 4.0000 1.0000 3.0000 sum= 8.0000
Nv(i): 2.0000 2.0000 0.0000 sum= 4.0000
A(i): 0.0044 0.0037 0.0131
B(i): 0.0022 0.0075 -0.0000
LWL85: dS = 0.0126 dN = 0.0073 w = 0.5811 S = 322.3 N = 1102.7
LWL85m: dS = 0.0081 dN = 0.0087 w = 1.0811 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0081 dN = 0.0077 w = 0.9591
7 (WHR1_DNA225) vs. 4 (Phet26_DNA21)
L(i): 922.5 269.5 233.0 sum= 1425.0
Ns(i): 0.0000 0.0000 3.0000 sum= 3.0000
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
A(i): -0.0000 -0.0000 0.0130
B(i): 0.0016 0.0056 -0.0000
LWL85: dS = 0.0094 dN = 0.0027 w = 0.2903 S = 322.8 N = 1102.2
LWL85m: dS = 0.0060 dN = 0.0033 w = 0.5399 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0060 dN = 0.0025 w = 0.4178
7 (WHR1_DNA225) vs. 5 (Pmex37_DNA21)
L(i): 923.0 269.5 232.5 sum= 1425.0
Ns(i): 1.5000 0.5000 2.0000 sum= 4.0000
Nv(i): 0.5000 1.5000 0.0000 sum= 2.0000
A(i): 0.0016 0.0019 0.0087
B(i): 0.0005 0.0056 -0.0000
LWL85: dS = 0.0078 dN = 0.0032 w = 0.4075 S = 322.3 N = 1102.7
LWL85m: dS = 0.0050 dN = 0.0038 w = 0.7582 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0050 dN = 0.0033 w = 0.6602
7 (WHR1_DNA225) vs. 6 (Ptre197_DNA2)
L(i): 923.0 269.5 232.5 sum= 1425.0
Ns(i): 4.0000 0.0000 4.0000 sum= 8.0000
Nv(i): 2.0000 1.0000 0.0000 sum= 3.0000
A(i): 0.0044 -0.0000 0.0175
B(i): 0.0022 0.0037 -0.0000
LWL85: dS = 0.0126 dN = 0.0064 w = 0.5052 S = 322.3 N = 1102.7
LWL85m: dS = 0.0081 dN = 0.0076 w = 0.9400 S = 502.0 N = 923.0 (rho = 1.000)
LPB93: dS = 0.0081 dN = 0.0069 w = 0.8491
8 (YALD273_DNA5) vs. 1 (Pdel181_DNA2)
L(i): 922.5 269.0 233.5 sum= 1425.0
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
A(i): 0.0016 0.0019 0.0043
B(i): 0.0011 0.0037 -0.0000
LWL85: dS = 0.0047 dN = 0.0032 w = 0.6832 S = 323.2 N = 1101.8
LWL85m: dS = 0.0030 dN = 0.0038 w = 1.2689 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0030 dN = 0.0033 w = 1.1052
8 (YALD273_DNA5) vs. 2 (Pfre186_DNA2)
L(i): 922.5 269.5 233.0 sum= 1425.0
Ns(i): 2.5000 0.5000 1.0000 sum= 4.0000
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
A(i): 0.0027 0.0019 0.0043
B(i): 0.0011 0.0037 -0.0000
LWL85: dS = 0.0047 dN = 0.0041 w = 0.8779 S = 322.8 N = 1102.2
LWL85m: dS = 0.0030 dN = 0.0049 w = 1.6325 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0030 dN = 0.0044 w = 1.4686
8 (YALD273_DNA5) vs. 3 (Pgra187_DNA2)
L(i): 922.5 270.0 232.5 sum= 1425.0
Ns(i): 4.0000 1.0000 2.0000 sum= 7.0000
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
A(i): 0.0044 0.0037 0.0087
B(i): 0.0016 0.0056 -0.0000
LWL85: dS = 0.0094 dN = 0.0064 w = 0.6803 S = 322.5 N = 1102.5
LWL85m: dS = 0.0060 dN = 0.0076 w = 1.2668 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0060 dN = 0.0069 w = 1.1440
8 (YALD273_DNA5) vs. 4 (Phet26_DNA21)
L(i): 922.0 270.0 233.0 sum= 1425.0
Ns(i): 0.0000 0.0000 0.0000 sum= 0.0000
Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
A(i): 0.0000 0.0000 0.0000
B(i): -0.0000 -0.0000 -0.0000
LWL85: dS = 0.0000 dN = 0.0000 w = nan S = 323.0 N = 1102.0
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
LPB93: dS = 0.0000 dN = 0.0000 w = nan
8 (YALD273_DNA5) vs. 5 (Pmex37_DNA21)
L(i): 922.5 270.0 232.5 sum= 1425.0
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
Nv(i): 1.0000 0.0000 0.0000 sum= 1.0000
A(i): 0.0016 0.0019 0.0043
B(i): 0.0011 -0.0000 -0.0000
LWL85: dS = 0.0047 dN = 0.0023 w = 0.4868 S = 322.5 N = 1102.5
LWL85m: dS = 0.0030 dN = 0.0027 w = 0.9065 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0030 dN = 0.0025 w = 0.8244
8 (YALD273_DNA5) vs. 6 (Ptre197_DNA2)
L(i): 922.5 270.0 232.5 sum= 1425.0
Ns(i): 4.0000 0.0000 3.0000 sum= 7.0000
Nv(i): 1.5000 0.5000 0.0000 sum= 2.0000
A(i): 0.0044 -0.0000 0.0131
B(i): 0.0016 0.0019 -0.0000
LWL85: dS = 0.0094 dN = 0.0055 w = 0.5801 S = 322.5 N = 1102.5
LWL85m: dS = 0.0060 dN = 0.0065 w = 1.0802 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0060 dN = 0.0060 w = 0.9989
8 (YALD273_DNA5) vs. 7 (WHR1_DNA225)
L(i): 922.5 269.5 233.0 sum= 1425.0
Ns(i): 0.0000 0.0000 3.0000 sum= 3.0000
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
A(i): -0.0000 -0.0000 0.0130
B(i): 0.0016 0.0056 -0.0000
LWL85: dS = 0.0094 dN = 0.0027 w = 0.2903 S = 322.8 N = 1102.2
LWL85m: dS = 0.0060 dN = 0.0033 w = 0.5399 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0060 dN = 0.0025 w = 0.4178
9 (Pop_trich_ch) vs. 1 (Pdel181_DNA2)
L(i): 922.5 269.0 233.5 sum= 1425.0
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
A(i): 0.0016 0.0019 0.0043
B(i): 0.0011 0.0037 -0.0000
LWL85: dS = 0.0047 dN = 0.0032 w = 0.6832 S = 323.2 N = 1101.8
LWL85m: dS = 0.0030 dN = 0.0038 w = 1.2689 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0030 dN = 0.0033 w = 1.1052
9 (Pop_trich_ch) vs. 2 (Pfre186_DNA2)
L(i): 922.5 269.5 233.0 sum= 1425.0
Ns(i): 2.5000 0.5000 1.0000 sum= 4.0000
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
A(i): 0.0027 0.0019 0.0043
B(i): 0.0011 0.0037 -0.0000
LWL85: dS = 0.0047 dN = 0.0041 w = 0.8779 S = 322.8 N = 1102.2
LWL85m: dS = 0.0030 dN = 0.0049 w = 1.6325 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0030 dN = 0.0044 w = 1.4686
9 (Pop_trich_ch) vs. 3 (Pgra187_DNA2)
L(i): 922.5 270.0 232.5 sum= 1425.0
Ns(i): 4.0000 1.0000 2.0000 sum= 7.0000
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
A(i): 0.0044 0.0037 0.0087
B(i): 0.0016 0.0056 -0.0000
LWL85: dS = 0.0094 dN = 0.0064 w = 0.6803 S = 322.5 N = 1102.5
LWL85m: dS = 0.0060 dN = 0.0076 w = 1.2668 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0060 dN = 0.0069 w = 1.1440
9 (Pop_trich_ch) vs. 4 (Phet26_DNA21)
L(i): 922.0 270.0 233.0 sum= 1425.0
Ns(i): 0.0000 0.0000 0.0000 sum= 0.0000
Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
A(i): 0.0000 0.0000 0.0000
B(i): -0.0000 -0.0000 -0.0000
LWL85: dS = 0.0000 dN = 0.0000 w = nan S = 323.0 N = 1102.0
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
LPB93: dS = 0.0000 dN = 0.0000 w = nan
9 (Pop_trich_ch) vs. 5 (Pmex37_DNA21)
L(i): 922.5 270.0 232.5 sum= 1425.0
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
Nv(i): 1.0000 0.0000 0.0000 sum= 1.0000
A(i): 0.0016 0.0019 0.0043
B(i): 0.0011 -0.0000 -0.0000
LWL85: dS = 0.0047 dN = 0.0023 w = 0.4868 S = 322.5 N = 1102.5
LWL85m: dS = 0.0030 dN = 0.0027 w = 0.9065 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0030 dN = 0.0025 w = 0.8244
9 (Pop_trich_ch) vs. 6 (Ptre197_DNA2)
L(i): 922.5 270.0 232.5 sum= 1425.0
Ns(i): 4.0000 0.0000 3.0000 sum= 7.0000
Nv(i): 1.5000 0.5000 0.0000 sum= 2.0000
A(i): 0.0044 -0.0000 0.0131
B(i): 0.0016 0.0019 -0.0000
LWL85: dS = 0.0094 dN = 0.0055 w = 0.5801 S = 322.5 N = 1102.5
LWL85m: dS = 0.0060 dN = 0.0065 w = 1.0802 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0060 dN = 0.0060 w = 0.9989
9 (Pop_trich_ch) vs. 7 (WHR1_DNA225)
L(i): 922.5 269.5 233.0 sum= 1425.0
Ns(i): 0.0000 0.0000 3.0000 sum= 3.0000
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
A(i): -0.0000 -0.0000 0.0130
B(i): 0.0016 0.0056 -0.0000
LWL85: dS = 0.0094 dN = 0.0027 w = 0.2903 S = 322.8 N = 1102.2
LWL85m: dS = 0.0060 dN = 0.0033 w = 0.5399 S = 502.5 N = 922.5 (rho = 1.000)
LPB93: dS = 0.0060 dN = 0.0025 w = 0.4178
9 (Pop_trich_ch) vs. 8 (YALD273_DNA5)
L(i): 922.0 270.0 233.0 sum= 1425.0
Ns(i): 0.0000 0.0000 0.0000 sum= 0.0000
Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
A(i): 0.0000 0.0000 0.0000
B(i): -0.0000 -0.0000 -0.0000
LWL85: dS = 0.0000 dN = 0.0000 w = nan S = 323.0 N = 1102.0
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
LPB93: dS = 0.0000 dN = 0.0000 w = nan
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