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# -*-Perl-*- Test Harness script for Bioperl
# $Id: SearchIO_wise.t 11733 2007-10-26 18:22:10Z jason $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 20);
use_ok('Bio::SearchIO');
}
my $parser = Bio::SearchIO->new(-file => test_input_file('genewise.out'),
-format => 'wise',
-wisetype => 'genewise');
my $result = $parser->next_result;
my $hit = $result->next_hit;
is($result->query_name, 'SINFRUP00000067802');
is($hit->name, 'Scaffold_2042.1');
is($hit->score, 2054.68);
my $hsp = $hit->next_hsp;
is($hsp->query->start,22265);
is($hsp->query->end,22396);
is($hsp->query->strand,1);
is($hsp->query->score, 2054.68);
is($hsp->hit->start,1);
is($hsp->hit->end,44);
is($hsp->hit->strand,0);
is($hsp->hit->score, 2054.68);
$hsp = $hit->next_hsp;
is($hsp->query->start,24224);
is($hsp->query->end,24328);
is($hsp->hit->start,45);
is($hsp->hit->end,79);
$hsp = $hit->next_hsp;
is($hsp->query->start,24471);
is($hsp->query->end,24513);
is($hsp->hit->start,80);
is($hsp->hit->end,93);
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