1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
|
GC Proportion = 33.3%
Minimum gene length = 90
Minimum overlap length = 30
Minimum overlap percent = 10.0%
Threshold score = 90
Use independent scores = True
Ignore independent score on orfs longer than 481
Use strict independent model = True
Use first start codon = True
Orf Gene Lengths Gene -- Frame Scores - Indep
ID# Fr Start Start End Orf Gene Score F1 F2 F3 R1 R2 R3 Score
F3 654 681 779 126 99 0 99 _ 0 _ _ _ 0 0 -1.452
R1 984 957 772 213 186 0 99 _ _ 0 _ _ 0 0 -1.383
F2 917 917 1009 93 93 0 99 0 _ _ _ _ 0 0 -1.335
1 F1 292 292 1620 1329 1329 99 99 _ _ _ _ _ 0 396 -1.219
R2 1631 1607 1515 117 93 0 99 _ _ _ 0 _ 0 0 -1.331
F2 1592 1706 1837 246 132 0 _ 0 _ _ _ _ 99 0 -1.346
R2 1844 1829 1737 108 93 0 _ 0 _ _ 0 _ 99 0 -1.351
F3 1860 1881 2000 141 120 2 _ 7 2 _ _ 21 68 2 -1.372
F2 1841 1856 2095 255 240 0 _ 0 _ _ _ _ 99 7 -1.373
R3 2152 2017 1865 288 153 0 _ 8 _ _ _ 0 90 21 -1.397
F3 2004 2028 2174 171 147 0 _ _ 0 _ _ _ 99 0 -1.385
2 R1 2385 2349 2233 153 117 99 _ _ _ 99 _ _ 0 99 -1.208
R1 3039 3033 2944 96 90 14 _ _ _ 14 _ _ 85 14 -1.262
R3 3253 3235 3098 156 138 0 _ _ 0 _ _ 0 99 0 -1.356
F3 3087 3105 3254 168 150 0 _ _ 0 _ _ 0 99 0 -1.336
R3 3463 3439 3323 141 117 1 _ _ 98 _ _ 1 0 1 -1.235
F1 3550 3589 3699 150 111 0 0 _ 99 _ _ _ 0 0 -1.281
R3 3727 3712 3611 117 102 0 _ _ 99 _ _ 0 0 0 -1.247
R1 4038 4026 3916 123 111 0 _ _ 99 0 _ _ 0 0 -1.376
R2 4097 4091 3999 99 93 0 _ _ 99 _ 0 _ 0 0 -1.296
F1 4009 4009 4110 102 102 0 0 _ 99 _ _ _ 0 0 -1.341
F1 4171 4189 4311 141 123 0 0 _ 99 _ 0 0 0 0 -1.416
3 F3 3258 3279 4397 1140 1119 99 _ _ 99 _ _ _ 0 791 -1.201
R3 4405 4300 4184 222 117 0 0 _ 99 _ 0 0 0 0 -1.360
R2 4481 4436 4323 159 114 0 _ _ _ _ 0 _ 99 0 -1.359
F2 4454 4460 4549 96 90 0 _ 0 _ _ _ _ 99 0 -1.348
R1 5025 4962 4801 225 162 0 _ 0 _ 0 _ _ 99 0 -1.394
F2 4790 4811 5026 237 216 0 _ 0 _ 0 _ _ 99 0 -1.350
4 F1 5038 5062 6156 1119 1095 99 99 _ _ _ _ _ 0 99 -1.184
R2 6386 6383 6216 171 168 0 0 _ 99 _ 0 _ 0 0 -1.345
F1 6217 6292 6432 216 141 0 0 _ 99 _ _ _ 0 0 -1.391
R3 6487 6469 6338 150 132 1 _ _ 98 _ _ 1 0 1 -1.268
5 F3 6105 6156 6617 513 462 99 _ _ 99 _ _ _ 0 395 -1.205
R2 6722 6704 6600 123 105 0 0 _ _ _ 0 _ 99 0 -1.380
F1 6601 6628 6723 123 96 0 0 _ _ _ 0 0 99 0 -1.504
R3 6880 6856 6743 138 114 0 _ 99 0 _ _ 0 0 0 -1.541
R3 7033 6988 6884 150 105 0 _ 99 _ _ _ 0 0 0 -1.423
F3 7062 7062 7187 126 126 0 _ 99 0 _ 0 0 0 0 -1.379
R2 7196 7067 6975 222 93 0 _ 99 _ _ 0 _ 0 0 -1.504
R3 7267 7237 7037 231 201 0 _ 99 _ _ _ 0 0 0 -1.426
F3 7299 7299 7415 117 117 0 _ 99 0 _ _ _ 0 0 -1.388
R2 7502 7481 7389 114 93 0 _ 99 _ _ 0 0 0 0 -1.329
F3 7419 7425 7514 96 90 0 _ 98 0 1 _ 0 0 0 -1.341
R3 7525 7468 7337 189 132 0 _ 99 _ _ _ 0 0 0 -1.333
R1 7683 7524 7423 261 102 0 _ 96 _ 0 _ 0 2 1 -1.288
F3 7896 7899 8036 141 138 0 _ 99 0 _ 0 0 0 0 -1.479
R3 8050 8002 7895 156 108 0 _ 99 0 _ 0 0 0 0 -1.540
R2 8147 8069 7875 273 195 0 _ 99 _ _ 0 _ 0 0 -1.384
R3 8305 8293 8123 183 171 0 _ 99 _ _ _ 0 0 0 -1.399
6 F2 6674 6686 8602 1929 1917 99 _ 99 _ _ _ _ 0 1481 -1.218
R3 8986 8935 8819 168 117 0 _ 99 _ _ _ 0 0 0 -1.463
F3 9003 9003 9197 195 195 0 _ 99 0 _ _ _ 0 0 -1.421
R1 9246 9240 9142 105 99 0 _ 99 _ 0 _ _ 0 0 -1.309
R3 10417 10360 10199 219 162 0 _ 99 _ _ _ 0 0 0 -1.428
R3 10576 10576 10421 156 156 0 _ 99 _ _ _ 0 0 0 -1.380
R1 10851 10809 10576 276 234 0 _ 99 _ 0 _ _ 0 0 -1.340
R1 11097 11088 10999 99 90 0 _ 99 _ 0 _ _ 0 0 -1.362
7 F2 8606 8624 11125 2520 2502 99 _ 99 _ _ _ _ 0 792 -1.206
R2 11399 11345 11205 195 141 0 _ _ 99 _ 0 _ 0 0 -1.459
R3 11584 11536 11396 189 141 0 _ _ 99 _ _ 0 0 0 -1.375
R1 11742 11724 11635 108 90 0 _ 0 99 0 0 _ 0 0 -1.396
8 F3 11118 11133 12119 1002 987 99 _ _ 99 _ _ _ 0 396 -1.229
F1 11974 11974 12129 156 156 0 0 _ _ _ _ 81 18 0 -1.379
9 R3 12142 12130 11921 222 210 94 _ _ _ _ _ 94 5 175 -1.287
R2 12149 12146 12012 138 135 0 _ _ _ _ 0 _ 99 0 -1.381
R3 12469 12355 12167 303 189 0 _ _ 0 _ _ 0 99 0 -1.466
F3 12123 12129 12470 348 342 6 _ _ 6 _ _ _ 93 6 -1.391
R2 12494 12494 12309 186 186 0 _ _ _ _ 0 _ 99 0 -1.454
F2 12422 12473 12565 144 93 6 _ 6 _ _ _ _ 93 6 -1.318
R1 12651 12636 12541 111 96 0 _ _ 1 0 _ _ 98 0 -1.441
F3 12477 12489 12662 186 174 0 _ _ 0 _ _ _ 99 1 -1.389
R3 13084 13069 12977 108 93 0 99 _ _ _ 0 0 0 0 -1.347
R2 13169 13166 12972 198 195 0 99 _ _ _ 0 _ 0 0 -1.282
F3 13176 13218 13313 138 96 0 99 _ 0 _ _ _ 0 0 -1.296
10 F1 12670 12715 13449 780 735 99 99 _ _ _ _ _ 0 396 -1.211
R1 13470 13449 13294 177 156 0 99 _ _ 0 _ _ 0 0 -1.444
R3 13627 13624 13535 93 90 0 _ _ _ _ _ 0 99 0 -1.409
R2 13691 13688 13593 99 96 0 _ _ _ _ 0 _ 99 0 -1.364
11 F3 13656 13671 13838 183 168 99 _ _ 99 _ _ _ 0 99 -1.293
R2 13889 13871 13740 150 132 4 _ _ _ _ 4 _ 95 4 -1.327
F1 13762 13774 13917 156 144 0 0 _ _ _ _ _ 99 0 -1.376
F2 13928 13949 14074 147 126 1 0 1 _ 98 _ _ 0 1 -1.301
F1 13921 13963 14088 168 126 0 0 _ _ 99 _ _ 0 0 -1.425
R2 14222 14192 14091 132 102 0 _ _ _ 84 0 _ 15 0 -1.473
F1 14128 14128 14223 96 96 0 0 _ 0 98 0 _ 1 0 -1.481
F3 14103 14133 14330 228 198 0 _ _ 0 99 _ _ 0 0 -1.405
F2 14216 14270 14362 147 93 38 0 38 _ 50 _ _ 11 38 -1.336
F1 14248 14296 14397 150 102 0 0 _ _ 96 _ _ 3 0 -1.454
R2 14603 14594 14439 165 156 0 _ _ _ 99 0 _ 0 0 -1.305
12 R1 14847 14805 13807 1041 999 99 _ _ _ 99 _ _ 0 822 -1.279
F2 15419 15440 15544 126 105 0 _ 0 0 _ 94 _ 5 0 -1.496
R3 15682 15682 15530 153 153 0 _ _ 0 _ 99 0 0 0 -1.381
F2 15584 15599 15688 105 90 0 0 0 0 _ 99 _ 0 0 -1.518
F3 15210 15219 15746 537 528 0 _ _ 0 _ 99 _ 0 0 -1.512
13 R2 15791 15776 15219 573 558 99 _ _ _ _ 99 _ 0 490 -1.295
F1 16213 16219 16326 114 108 0 0 _ 99 _ _ _ 0 0 -1.297
F2 16253 16268 16369 117 102 0 _ 0 99 _ _ _ 0 0 -1.351
R3 17203 17101 17006 198 96 0 _ _ 98 _ _ 0 0 0 -1.297
F2 17198 17207 17335 138 129 0 _ 0 99 0 _ _ 0 0 -1.393
R1 17370 17349 17158 213 192 0 _ _ 99 0 _ _ 0 0 -1.339
14 F3 15849 15855 17459 1611 1605 99 _ _ 99 _ _ _ 0 593 -1.232
R3 17677 17623 17483 195 141 0 _ _ 99 _ _ 0 0 0 -1.339
R2 18242 18137 18045 198 93 0 _ _ 99 _ 0 _ 0 0 -1.320
15 F3 17463 17484 18374 912 891 99 _ _ 99 _ _ _ 0 297 -1.206
R2 18620 18554 18438 183 117 0 0 _ _ 99 0 _ 0 0 -1.344
F1 18439 18535 18633 195 99 0 0 _ _ 99 _ _ 0 0 -1.318
F2 18677 18719 18811 135 93 4 _ 4 _ 95 _ 0 0 4 -1.188
F1 18808 18835 18927 120 93 0 0 _ _ 99 _ _ 0 0 -1.497
R2 19040 18995 18885 156 111 0 _ _ _ 99 0 _ 0 0 -1.367
F3 18978 18981 19124 147 144 0 _ _ 0 99 _ _ 0 0 -1.309
R2 19235 19232 19044 192 189 0 _ _ _ 99 0 _ 0 0 -1.301
R3 19357 19357 19211 147 147 0 _ _ 0 99 _ 0 0 0 -1.360
F3 19188 19269 19391 204 123 0 _ _ 0 99 _ _ 0 0 -1.269
16 R1 19449 19407 18322 1128 1086 99 _ _ _ 99 _ _ 0 986 -1.187
F3 19443 19473 19571 129 99 0 _ _ 0 _ _ _ 99 0 -1.312
R2 19631 19628 19527 105 102 23 _ _ _ _ 23 _ 76 23 -1.268
F2 19610 19616 19720 111 105 42 _ 42 _ _ _ _ 57 42 -1.247
R3 19873 19843 19718 156 126 0 _ _ 0 _ _ 0 99 0 -1.478
F3 19719 19740 19895 177 156 0 _ _ 0 _ _ _ 99 0 -1.482
F1 20041 20068 20175 135 108 0 0 _ 70 _ _ 28 1 0 -1.444
R3 20185 20110 19976 210 135 0 _ _ 99 _ _ 0 0 28 -1.372
17 F3 19977 19980 20192 216 213 99 _ _ 99 _ _ _ 0 268 -1.320
F1 20179 20266 20364 186 99 0 0 0 _ _ _ 99 0 0 -1.365
R1 20445 20418 20305 141 114 0 _ 0 _ 0 _ 99 0 0 -1.318
F2 20261 20288 20446 186 159 0 _ 0 _ _ _ 99 0 0 -1.376
F1 20404 20413 20601 198 189 0 0 _ _ _ _ 99 0 0 -1.361
F3 20469 20583 20756 288 174 0 _ _ 0 _ _ 99 0 0 -1.274
18 R3 20824 20749 20189 636 561 99 _ _ _ _ _ 99 0 594 -1.215
F1 20752 20773 20910 159 138 4 4 2 _ _ _ _ 92 4 -1.340
R1 21078 21039 20842 237 198 0 _ 99 _ 0 _ _ 0 0 -1.243
F3 21063 21069 21212 150 144 0 _ 99 0 _ _ _ 0 0 -1.350
R1 21597 21585 21496 102 90 0 _ 99 _ 0 0 _ 0 0 -1.313
F1 21508 21520 21624 117 105 0 0 99 _ _ 0 _ 0 0 -1.361
19 F2 20765 20801 21703 939 903 99 _ 99 _ _ _ _ 0 497 -1.192
R3 22108 22078 21914 195 165 0 _ 99 _ _ _ 0 0 0 -1.325
F3 21918 21945 22109 192 165 0 _ 99 0 _ _ 0 0 0 -1.374
F3 22113 22116 22238 126 123 0 _ 99 0 0 0 _ 0 0 -1.273
R2 22277 22232 22020 258 213 0 _ 99 _ _ 0 _ 0 0 -1.294
R1 22320 22194 22081 240 114 0 _ 99 _ 0 0 _ 0 0 -1.237
20 F2 21845 21851 22351 507 501 99 _ 99 _ _ _ _ 0 594 -1.193
R3 22465 22462 22241 225 222 0 _ _ _ _ _ 0 99 0 -1.358
R2 22490 22487 22398 93 90 0 _ _ 99 _ 0 _ 0 0 -1.415
F1 22402 22420 22554 153 135 0 0 _ 99 _ _ _ 0 0 -1.354
R2 22598 22592 22494 105 99 0 _ _ 99 _ 0 _ 0 0 -1.425
R3 22720 22681 22547 174 135 0 _ _ 99 _ _ 0 0 0 -1.269
F1 22657 22663 22776 120 114 0 0 _ 99 _ 0 _ 0 0 -1.353
21 F3 22332 22359 23099 768 741 99 _ _ 99 _ _ _ 0 594 -1.221
R2 23501 23471 23271 231 201 0 _ _ 99 _ 0 _ 0 0 -1.351
22 F3 23112 23118 23723 612 606 99 _ _ 99 _ _ _ 0 198 -1.186
R2 24008 24008 23910 99 99 0 _ _ _ _ 0 _ 99 0 -1.382
F1 23920 23920 24033 114 114 0 0 _ _ _ _ _ 99 0 -1.364
F1 24220 24241 24330 111 90 0 0 _ 16 _ _ _ 83 0 -1.424
F2 24320 24365 24454 135 90 0 _ 0 19 _ _ _ 79 0 -1.403
R1 24507 24507 24412 96 96 0 _ _ 99 0 _ _ 0 0 -1.387
F2 24467 24536 24637 171 102 0 0 0 99 _ _ _ 0 0 -1.483
R3 24673 24670 24548 126 123 5 0 _ 94 _ _ 5 0 5 -1.270
F1 24496 24562 24723 228 162 0 0 _ 99 _ _ _ 0 0 -1.385
R1 25095 25089 24967 129 123 0 _ _ 99 0 _ _ 0 0 -1.450
R2 25343 25304 25185 159 120 0 _ _ 99 _ 0 _ 0 0 -1.591
F1 25225 25267 25362 138 96 0 0 0 99 _ _ _ 0 0 -1.484
F2 25208 25331 25444 237 114 0 _ 0 99 _ _ _ 0 0 -1.501
F1 25774 25774 25863 90 90 0 0 0 99 0 _ _ 0 0 -1.385
23 F3 24150 24216 25895 1746 1680 99 _ _ 99 _ _ _ 0 1020 -1.261
R3 26158 26125 25970 189 156 0 _ _ _ _ _ 0 99 0 -1.368
F3 26055 26064 26216 162 153 83 _ _ 83 _ _ _ 16 83 -1.262
R2 26309 26285 26133 177 153 1 _ _ _ _ 1 _ 98 1 -1.294
R1 26370 26328 26212 159 117 0 _ _ _ 0 _ _ 99 0 -1.327
F3 26463 26592 26684 222 93 19 _ _ 19 14 _ 7 59 19 -1.301
R3 26698 26647 26477 222 171 84 _ _ 0 _ _ 84 14 91 -1.290
R1 26703 26697 26557 147 141 0 _ _ _ 0 _ 92 7 14 -1.342
F2 26672 26684 26890 219 207 0 _ 0 _ _ _ _ 99 0 -1.325
F2 26945 26954 27067 123 114 2 _ 2 _ 97 _ _ 0 2 -1.253
24 R1 27117 27090 26731 387 360 99 _ _ _ 99 _ _ 0 196 -1.219
R1 27276 27231 27142 135 90 0 _ _ _ 0 _ _ 99 0 -1.239
R1 27405 27375 27280 126 96 4 _ _ _ 4 _ _ 95 4 -1.307
R2 27743 27743 27654 90 90 0 _ _ _ _ 0 _ 99 0 -1.310
F2 27833 27836 27934 102 99 0 _ 0 _ _ _ _ 99 0 -1.427
F1 27904 27952 28092 189 141 7 7 _ _ _ _ _ 92 7 -1.317
25 F2 28001 28025 28141 141 117 95 _ 95 _ _ _ _ 4 95 -1.284
R1 28272 28203 28081 192 123 70 _ _ _ 70 _ _ 29 70 -1.319
F1 28240 28240 28362 123 123 0 0 _ 99 _ _ 0 0 0 -1.434
R3 28390 28375 28154 237 222 0 _ _ 99 _ _ 0 0 0 -1.331
R2 28544 28544 28383 162 162 0 _ _ 99 _ 0 _ 0 0 -1.403
F1 28387 28417 28548 162 132 0 0 _ 99 _ _ _ 0 0 -1.393
F1 28591 28663 28791 201 129 0 0 _ 99 _ 0 _ 0 0 -1.460
R2 28988 28940 28812 177 129 0 _ _ 99 _ 0 0 0 0 -1.442
R3 29005 28885 28766 240 120 0 _ _ 99 _ _ 0 0 0 -1.343
R1 29019 28977 28885 135 93 0 _ _ 99 0 0 0 0 0 -1.354
26 F3 28155 28185 29195 1041 1011 99 _ _ 99 _ _ _ 0 891 -1.249
F1 28987 28993 29244 258 252 0 0 _ _ _ _ _ 99 0 -1.434
R2 29579 29561 29430 150 132 0 99 _ _ _ 0 _ 0 0 -1.207
R1 29622 29616 29521 102 96 0 98 _ _ 0 _ _ 1 0 -1.321
R3 29866 29836 29702 165 135 0 99 _ 0 _ 0 0 0 0 -1.290
27 F1 29263 29263 29946 684 684 99 99 _ _ _ _ _ 0 395 -1.187
End = 29940
Original Genes = 27
Potential Genes = 27
Avg Olaps = 0.1
Potential Changes = 2
Potential Rejects = 2
Sure Rejects = 2
Original Genes = 27
Potential Genes = 25
Avg Olaps = 0.0
Potential Changes = 0
Potential Rejects = 0
Sure Rejects = 0
Original Genes = 27
Potential Genes = 25
Avg Olaps = 0.0
Potential Changes = 0
Potential Rejects = 0
Sure Rejects = 0
Putative Genes:
1 292 1620 [+1 L=1329 r=-1.219]
2 2349 2233 [-1 L= 117 r=-1.208]
3 3279 4397 [+3 L=1119 r=-1.201]
4 5062 6156 [+1 L=1095 r=-1.184]
5 6156 6617 [+3 L= 462 r=-1.205]
6 6686 8602 [+2 L=1917 r=-1.218]
7 8624 11125 [+2 L=2502 r=-1.206]
8 11133 12119 [+3 L= 987 r=-1.229]
10 12715 13449 [+1 L= 735 r=-1.211]
12 14805 13807 [-1 L= 999 r=-1.279]
13 15776 15219 [-3 L= 558 r=-1.295]
14 15855 17459 [+3 L=1605 r=-1.232]
15 17484 18374 [+3 L= 891 r=-1.206]
16 19407 18322 [-1 L=1086 r=-1.187]
17 19980 20192 [+3 L= 213 r=-1.320]
18 20749 20189 [-2 L= 561 r=-1.215]
19 20801 21703 [+2 L= 903 r=-1.192]
20 21851 22351 [+2 L= 501 r=-1.193]
21 22359 23099 [+3 L= 741 r=-1.221]
22 23118 23723 [+3 L= 606 r=-1.186]
23 24216 25895 [+3 L=1680 r=-1.261]
24 27090 26731 [-1 L= 360 r=-1.219]
25 28025 28141 [+2 L= 117 r=-1.284]
26 28185 29195 [+3 L=1011 r=-1.249]
27 29263 6 [+1 L= 684 r=-1.187]
|
