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sequence TTCCTTGGCCGCTCTGGTCAGCCCTCGCGATATCCGTATCTCTCCCCGCAGCCAGTCTACATCCCmCCATTCTACCGCGATGAGTTCGCTGGTCCGCAGCCCGGTCCACATGGCGAACTGCAACAGGTTCCGGTACTGGCCATCGGTGCCGGCCAGArTCAGTCGCTGCTCTTCCGGCGAGAACGGATCArTCTCGTCCTCGGTCyTCGGCTTCTCCCTGACCGAGTACGTCCAGCCCGCCAGCGGGTTGATCTCGAyCAGTTCGTCATGCACGGCATCATCTAGCGCCGACCGTAGGCAGCTCTGTACGTTCGACAGGCGCTTGTTCGAGGCGTCCATGCTCGCCATAGCCTCCTTGATCATCTTGCGACTGAGCAGCACCAGGGGATGATCGCCCAGCyTCGGCACCAGTACCCCGTCGATGATCTTCCGATAGCCATCGATGGTGCTTGCCTTCAGGACCTTCTCTTTCTTCTCCCGCCAGCTTGCGAGGTATTTCGACAACGGTACTTGCCCGGTCTGGTATCCAAGCCGATTGGCTCGCTTGGACTTGGGGAAGGTGGCCAGATAGTCGAACGTGCCGTTGTAGATCGTCAGTTCGATAGCGGCCTTGTGCTGCTCGACGCGTTTCAGGTTAGCGGGGCTGGGCTCAAGTGGGATGCGTTCGCGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCGCTCTGAcGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTTGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTCACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGGgTCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGGCTTCAGCCATGArGCAGGCGTCGCACGGcTCAGACTTGCTCGCCGCCCCATCCCTGAACCCGTCCCGCGAAGCATTGGCCATGTCTACGGCGGTGTAGAGCGGAGTAGGGCCGCCGCGCAGGTGTTCGATCATCTTGGCCTGCTGAGCGACTGTGGCTTCCAGGGCGATAATTTTGTAGTCCTGCTCG
lsequence TTCCTTGGCCGCTCTGGTCAGCCCTCGCGATATCCGTATCTCTCCCCGCAGCCAGTCTACATCCCmCCATTCTACCGCGATGAGTTCGCTGGTCCGCAGCCCGGTCCACATGGCGAACTGCAACAGGTTCCGGTACTGGCCATCGGTGCCGGCCAGArTCAGTCGCTGCTCTTCCGGCGAGAACGGATCArTCTCGTCCTCGGTCyTCGGCTTCTCCCTGACCGAGTACGTCCAGCCCGCCAGCGGGTTGATCTCGAyCAGTTCGTCATGCACGGCATCATCTAGCGCCGACCGTAGGCAGCTCTGTACGTTCGACAGGCGCTTGTTCGAGGCGTCCATGCTCGCCATAGCCTCCTTGATCATCTTGCGACTGAGCAGCACCAGGGGATGATCGCCCAGCyTCGGCACCAGTACCCCGTCGATGATCTTCCGATAGCCATCGATGGTGCTTGCCTTCAGGACCTTCTCTTTCTTCTCCCGCCAGCTTGCGAGGTATTTCGACAACGGTACTTGCCCGGTCTGGTATCCAAGCCGATTGGCTCGCTTGGACTTGGGGAAGGTGGCCAGATAGTCGAACGTGCCGTTGTAGATCGTCAGTTCGATAGCGGCCTTGTGCTGCTCGACGCGTTTCAGGTTAGCGGGGCTGGGCTCAAGTGGGATGCGTTCGCGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCGCTCTGA-cGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTTGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTCACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGGgTCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGGCTTCAGCCATGArGCAGGCGTCGCACGGcTCAGACTTGCTCGCCGCCCCATCCCTGAACCCGTCCCGCGAAGCATTGGCCATGTCTACGGCGGTGTAGAGCGGAGTAGGGCCGCCGCGCAGGTGTTCGATCATCTTGGCCTGCTGAGCGACTGTGGCTTCCAGGGCGATAATTTTGTAGTCCTGCTCG
quality 0x0B0B0B0B0B0B0B0B0B0404040404040404040404040404040E04040404040404040404040404040402020202020202020202020202020202020202020202020202160202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020202020404040404040404040404040404040404040416040404040404040404040404040404040404040404040404040404040404040416040404040404040404040404040416040404040404040404040404040404040402020202020202020202020202020202020202020202020202020202020202020202160202020202020202020202020202020202020909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090202020D02020D02020202020202020202020202020202020202020202020202020202020202020201010101010101010101010101010102020216020202020202020202020202020202020202020202020202020202020202020202020202090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303080303030303110303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303080303030303030303030303030303030303030303030303030303030303030303030303030803030303030303030303030303030303030303030303030303030303030303030303030303030303030313030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303050505050505050505050505050505050505050C0505050505050505050505160505050505050505050505050505050E050505050505050505050505050505050505050E050505050505050505050505050505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 2
seq_id
com_name
type
method asmg
ed_status
redundancy 2.13
perc_N 0.80
seq# 6
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_013_C07.x01.phd.1
asm_lend 1
asm_rend 276
seq_lend 1
seq_rend 276
best 0
comment
db sdsu
offset 0
lsequence TTCCTTGGCCGCTCTGGTCAGCCCTCGCGATATCCGTATCTCTCCCCGCAGCCAGTCTACATCCCCCCATTCTACCGCGATGAGTTCGCTGGTCCGCAGCCCGGTCCACATGGCGAACTGCAACAGGTTCCGGTACTGGCCATCGGTGCCGGCCAGAATCAGTCGCTGCTCTTCCGGCGAGAACGGATCAATCTCGTCCTCGGTCTTCGGCTTCTCCCTGACCGAGTACGTCCAGCCCGCCAGCGGGTTGATCTCGACCAGTTCGTCATGCACGGC
seq_name SDSU_RFPERU_013_G10.x01.phd.1
asm_lend 10
asm_rend 437
seq_lend 428
seq_rend 1
best 0
comment
db sdsu
offset 9
lsequence CGCTCTGGTCAGCCCCCGCGATATCCGTATCTCTCCCCGCAGCCAGTCTACATCCCACCATTCTACCGCGATGAGTTCGCTGGTCCGCAGCCCGGTCCACATGGCGAACTGCAACAGGTTCCGGTACTGGCCATCGGTGCCGGCCAGAGTCAGTCGCTGCTCTTCCGGCGAGAACGGATCAGTCTCGTCCTCGGTCCTCGGCTTCTCCCTGACCGAGTACGTCCAGCCCGCCAGCGGGTTGATCTCGATCAGTTCGTCATGCACGGCATCATCTAGCGCCGACCGTAGGCAGCTCTGTACGTTCGACAGGCGCTTGTTCGAGGCGTCCATGCTCGCCATAGCCTCCTTGATCATCTTGCGACTGAGCAGCACCAGGGGATGATCGCCCAGCTTCGGCACCAGTACCCCGTCGATGATCTTCCGATAGC
seq_name SDSU1_RFPERU_001_A09.x01.phd.1
asm_lend 343
asm_rend 839
seq_lend 2
seq_rend 496
best 0
comment
db sdsu
offset 342
lsequence CGC-ATCGCCTCCTTGATCATCTTGCGACTGAGCAGCACCAGGGGATGATCGCCCAGCCTCGGCACCAGTACCCCGTCGATGATCTTCCGATAGCCATCGATGGTGCTTGCCTTCAGGACCTTCTCTTTCTTCTCCCGCCAGCTTGCGAGGTATTTCGACAACGGTACTTGCCCGGTCTGGTATCCAAGCCGATTGGCTCGCTTGGACTTGGGGAAGGTGGCCAGATAGTCGAACGTGCCGTTGTAGATCGTCAGTTCGATAGCGGCCTTGTGCTGCTCGACGCGTTTCAGGTTAGCGGGGCTGGGCTCAAGTGGGATGCGTTCGCGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCG-TCTGA-CGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTT
seq_name SDSU1_RFPERU_001_B04.x01.phd.1
asm_lend 498
asm_rend 1123
seq_lend 1
seq_rend 623
best 0
comment
db sdsu
offset 497
lsequence TCGACAACGGTACTTGCCCGGTCTGGTATCCAAGCCGATTGGCTCGCTTGGACTTGGGGAAGGTGGCCAGATAGTCGAACGTGCCGTTGTAGATCGTCAGTTCGATAGCGGCCTTGTGCTGCTCGACGCGTTTCAGGTTAGCGGGGCTGGGCTCAAGTGGGATGCGTTCGCGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCGCTCTGA-CGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTCGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTCACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGGGTCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGG-TTCAGCCATGAGGCAGGCGTCGCACGG-TCAGACTTGCTCGCCGCCC-ATCCCTGAACCCGTCC
seq_name SDSU_RFPERU_015_G04.x01.phd.1
asm_lend 668
asm_rend 1082
seq_lend 1
seq_rend 416
best 0
comment
db sdsu
offset 667
lsequence CGGCACTGCTCACCATCGAACATGAAGCTGATTTCAATACTACTTTTCGACGCCGCTCTGAACGCCGCTGCGCTTTCCACCCATTCCGCATACCCATCCACACTTATTAGAGGTTTGTTGTCCGGCGCATGCCTCCATACGAGCCCCTTGGGCCATGTGCCGTCAGCGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTTGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTAACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGGGTCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGGCTTCAGCCATGAAGCAGGCGTCGC
seq_name SDSU_RFPERU_014_H06.x01.phd.1
asm_lend 833
asm_rend 1246
seq_lend 1
seq_rend 413
best 0
comment
db sdsu
offset 833
lsequence CGATCTTGGCTCTGATCGCGGCCTCAGTGTAGCCACTTTCGATGGCGAACTGGCTGATCGTCTTGTATTTGACCATCTCAACCCTCCTTGCTCATGGCTTCACGGAATGCAGCGGTGTATTCCTCGACGATCTTTTCAAGTGG-TCGCTGCCGGCCGGATCGCAAAGCCGGTCGATATATTTGATTGCCATTCGGCCAAGAGCTGCATCCTTGCGCAGAGCCTCGGCTTCAGCCATGAAGCAGGCGTCGCACGGCTCAGACTTGCTCGCCGCCCCATCCCTGAACCCGTCCCGCGAAGCATTGGCCATGTCTACGGCGGTGTAGAGCGGAGTAGGGCCGCCGCGCAGGTGTTCGATCATCTTGGCCTGCTGAGCGACTGTGGCTTCCAGGGCGATAATTTTGTAGTCCTGCTCG
|
sequence TAGGATTGGATTATTTGGAAAGGGTTTTTGCGCGCTTCTTCGACCACGCAATCACGTCAAGCACCGCGCTTTTGCTGAACACGCTGCGCTGCTTGTAGTAGTCGATCGAGTCCCGGGCTACGCTGAAGCAAATGCCCTCTGGATACTTCAGCTTGCGCAGTTCGTCGTGAACGTTTTTTCGATGAACTCAAACGGAGTCATATCGCCACCCATTCGTTTTTGCCGTTGTAGAAGCCTCGCCAyTCCCCGAGCCTGAACACCAAGGTCCCAGGGtGCAGAGCCATGCGCGAGAGATTGGCCAGCCATCGAGCCGGAAGCTTTTCTTGATCGCGCTCAGACGGCGCTTGCGGATTCGCGTTCGTGACAGATCGATCCGCCGGATTCGGATTAGAGCCATGTTGAATTCCAGyCAGGCGCCGCCCTCCGGGTTCCGGATGCAGCAGGTTGGATGGGGTTACTGCTTCGGCGCTTTCGGGAAGAACGCAGGGCGTGGGCCGCCGCGCTTCGATTTTGGATAGTCGATTTCGAACTTGGTGAGGATGCGAGTGAAGGCTGTAAAAGAGATTCCGGCCTTTTCCATAGCCTGGTTTCGCGTCAAGCCAAGCTCCTTGAACGCCTTGATGCGTGCTGCGTCTTGCGCATCTTTTGCTTCATCGACAGTGGCCGGTTTCAGATTCTTGCGCGCATAATAGGATGCTGACTGAAAACTGAATCCTCCTTCTTTGGCCAGAGAA
lsequence TAGGATTGGATTATTTGGAAAGGGTTTTTGCGCGCTTCTTCGACCACGCAATCACGTCAAGCACCGCGCTTTTGCTGAACACGCTGCGCTGCTTGTAGTAGTCGATCGAGTCCCGGGCTACGCTGAAGCAAATGCCCTCTGGATACTTCAGCTTGCGCAGTTCGTCGTGAACGTTTTTTCGATGAACTCAAACGGAGTCATATCGCCACCCATTCGTTTTTGCCGTTGTAGAAGCCTCGCCAyTCCCCGAGCCTGAACACCAAGGTCCCAGGG-tGCAGAGCCATGCGCGAGAGATTGGCCAGCCATCGAGCCGGAAGCTTTTCTTGATCGCGCTCAGACGGCGCTTGCGGATTCGCGTTCGTGACAGATCGATCCGCCGGATTCGGATTAGAGCCATGTTGAATTCCAGyCAGGCGCCGCCCTCCGGGTTCCGGATGCAGCAGGTTGGATGGGGTTACTGCTTCGGCGCTTTCGGGAAGAACGCAGGGCGTGGGCCGCCGCGCTTCGATTTTGGATAGTCGATTTCGAACTTGGTGAGGATGCGAGTGAAGGCTGTAAAAGAGATTCCGGCCTTTTCCATAGCCTGGTTTCGCGTCAAGCCAAGCTCCTTGAACGCCTTGATGCGTGCTGCGTCTTGCGCATCTTTTGCTTCATCGACAGTGGCCGGTTTCAGATTCTTGCGCGCATAATAGGATGCTGACTGAAAACTGAATCCTCCTTCTTTGGCCAGAGAA
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090903030D030303030303030303030303030303030303030303030303030303030303030303030303030303030303160303030303030303030303030303030303030303030303030303030303030D0303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030316030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030303030305050505050505050505050505050505050505050505050505050B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 17
seq_id
com_name
type
method asmg
ed_status
redundancy 1.43
perc_N 0.41
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU1_RFPERU_001_E04.x01.phd.1
asm_lend 1
asm_rend 510
seq_lend 1
seq_rend 511
best 0
comment
db ZZZ
offset 0
lsequence TAGGATTGGATTATTTGGAAAGGGTTTTTGCGCGCTTCTTCGACCACGCAATCACGTCAAGCACCGCGCTTTTGCTGAACACGCTGCGCTGCTTGTAGTAGTCGATCGAGTCCCGGGCTACGCTGAAGCAAATGCCCTCTGGATACTTCAGCTTGCGCAGTTCGTCGTGAACGTTTTTTCGATGAACTCAAACGGAGTCATATCGCCACCCATTCGTTTTTGCCGTTGTAGAAGCCTCGCCATTCCCCGAGCCTGAACACCAAGGTCCCAGGGGTGCAGAGCCATGCGCGAGAGATTGGCCAGCCATCGAGCCGGAAGCTTTTCTTGATCGCGCTCAGACGGCGCTTGCGGATTCGCGTTCGTGACAGATCGATCCGCCGGATTCGGATTAGAGCCATGTTGAATTCCAGTCAGGCGCCGCCCTCCGGGTTCCGGATGCAGCAGGTTGGATGGGGTTACTGCTTCGGCGCTTTCGGGAAGAACGCAGGGCGTGGGCCGCCGCGCTTCGATT
seq_name SDSU_RFPERU_006_E05.x01.phd.1
asm_lend 198
asm_rend 734
seq_lend 3
seq_rend 538
best 0
comment
db ZZZ
offset 197
lsequence TC-TATCGCCACCCATTCGTTTTTGCCGTTGTAGAAGCCTCGCCACTCCCCGAGCCTGAACACCAAGGTCCCAGGG-TGCAGAGCCATGCGCGAGAGATTGGCCAGCCATCGAGCCGGAAGCTTTTCTTGATCGCGCTCAGACGGCGCTTGCGGATTCGCGTTCGTGACAGATCGATCCGCCGGATTCGGATTAGAGCCATGTTGAATTCCAGCCAGGCGCCGCCCTCCGGGTTCCGGATGCAGCAGGTTGGATGGGGTTACTGCTTCGGCGCTTTCGGGAAGAACGCAGGGCGTGGGCCGCCGCGCTTCGATTTTGGATAGTCGATTTCGAACTTGGTGAGGATGCGAGTGAAGGCTGTAAAAGAGATTCCGGCCTTTTCCATAGCCTGGTTTCGCGTCAAGCCAAGCTCCTTGAACGCCTTGATGCGTGCTGCGTCTTGCGCATCTTTTGCTTCATCGACAGTGGCCGGTTTCAGATTCTTGCGCGCATAATAGGATGCTGACTGAAAACTGAATCCTCCTTCTTTGGCCAGAGAA
|
sequence CCGTTCAAGCAGGAGATCAGCGCCTGCCATCTGCAACAGAGCATGGGGCGTCAAACCTCTGCGGCGTAGATCCTATATTCACAGGGGAGCCAAAAGCATTTGACCAACTGAGGGGAAGTGCCTCGGTGCCAAATTCAGAGCCTCGCCATCGTGCGGGGCTTTTTTGTTTCCTTCTTCCACTGCTCCCCAGCAGTTTGGCCGCCAACTGACGGCCTTTTTTATTCCTGGAGTCACGCCATGGCCGAACCCGCGAGCACCACTGCCGCCGGTGTCCTGCTCGCGAAGTACGGCATCATCATCGCTGGCTTCGCTGGAGCAATCCTTTCGCTGACCTTCCTTCAnGGGCCTGACCCGCAAGCAGGCCATTTGGGCATTCTTCACCGGGTTCGGCTCTGCGATCTTCTGCACGCCGCTGGCGATCAGCTTCTTCAAGCTGGAGCCTGGTGGCGAAACTCAATACGGCGTCGCATTCCTGATCGGCCTGCTGGCCATGAACATCATTCCCCTGTTGAAGAaAGCAATGCCGGGAGTGTTTGGCGTCTCGGGAGGTGCaGTAATGCAAACCATCCTGCAAGTCCTTGACGCTTTCCTGTGTGtgCTGGTGGTGCTAGCCGCTGCTGAGTACCT
lsequence CCGTTCAAGCAGGAGATCAGCGCCTGCCATCTGCAACAGAGCATGGGGCGTCAAACCTCTGCGGCGTAGATCCTATATTCACAGGGGAGCCAAAAGCATTTGACCAACTGAGGGGAAGTGCCTCGGTGCCAAATTCAGAGCCTCGCCATCGTGCGGGGCTTTTTTGTTTCCTTCTTCCACTGCTCCCCAGCAGTTTGGCCGCCAACTGACGGCCTTTTTTATTCCTGGAGTCACGCCATGGCCGAACCCGCGAGCACCACTGCCGCCGGTGTCCTGCTCGCGAAGTACGGCATCATCATCGCTGGCTTCGCTGGAGCAATCCTTTCGCTGACCTTCCTTCAnGGGCCTGACCCGCAAGCAGGCCATTTGGGCATTCTTCACCGGGTTCGGCTCTGCGATCTTCTGCACGCCGCTGGCGATCAGCTTCTTCAAGCTGGAGCCTGGTGGCGAAACTCAATACGGCGTCGCATTCCTGATCGGCCTGCTGGCCATGAACATCATTCCCCTGTTGAAGA-aAGCAATGCCGGGAGTGTTTGGCGTCTCGGGAGGTGCaGTAATGCAAACCATCCTGCAAGTCCTTGACGCTTTCCTGTGTGtgCTGGTGGTGCTAGCCGCTGCTGAGTACCT
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B150B0B0B0B0B0B0B0B0B0B0B0B0B0B0B090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B04040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040404040E040404040404040404040404040402020202020202020202020202020202020202020202020D020202020202040404040404040404040404040404040404040404040404040404040404040404040404040E0E0404040B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 106
seq_id
com_name
type
method asmg
ed_status
redundancy 1.23
perc_N 0.80
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_006_E04.x01.phd.1
asm_lend 1
asm_rend 627
seq_lend 1
seq_rend 626
best 0
comment
db sdsu
offset 0
lsequence CCGTTCAAGCAGGAGATCAGCGCCTGCCATCTGCAACAGAGCATGGGGCGTCAAACCTCTGCGGCGTAGATCCTATATTCACAGGGGAGCCAAAAGCATTTGACCAACTGAGGGGAAGTGCCTCGGTGCCAAATTCAGAGCCTCGCCATCGTGCGGGGCTTTTTTGTTTCCTTCTTCCACTGCTCCCCAGCAGTTTGGCCGCCAACTGACGGCCTTTTTTATTCCTGGAGTCACGCCATGGCCGAACCCGCGAGCACCACTGCCGCCGGTGTCCTGCTCGCGAAGTACGGCATCATCATCGCTGGCTTCGCTGGAGCAATCCTTTCGCTGACCTTCCTTCANGGGCCTGACCCGCAAGCAGGCCATTTGGGCATTCTTCACCGGGTTCGGCTCTGCGATCTTCTGCACGCCGCTGGCGATCAGCTTCTTCAAGCTGGAGCCTGGTGGCGAAACTCAATACGGCGTCGCATTCCTGATCGGCCTGCTGGCCATGAACATCATTCCCCTGTTGAAGA-AAGCAATGCCGGGAGTGTTTGGCGTCTCGGGAGGTGC-GTAATGCAAACCATCCTGCAAGTCCTTGACGCTTTCCTGTGTGTGCTGGTGGTGCTAGCCGCTGCTGAGTACCT
seq_name SDSU_RFPERU_010_B05.x01.phd.1
asm_lend 460
asm_rend 601
seq_lend 141
seq_rend 1
best 0
comment
db ZZZ
offset 459
lsequence CGGCGTCGCATTCCTGATCGGCCTGCTGGCCATGAACATCATTCCCCTGTTGAAGAGAAGCAATGCCGGGAGTGTTTGGCGTCTCGGGAGGTGCAGTAATGCAAACCATCCTGCAAGTCCTTGACGCTTTCCTGTGTG--CTG
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sequence AGCGCCGATACACATGCTCAAACCGCGCATCGAAGTCTTCGATCAAGACGCTGAAGTAGTAGCCGTCCATGTTGAAGTTGAGCGGCTGACCGGCGTCACGCAGCGTCTCCAGCTCCGTGACGCGGTCACCAGCTGTCGCGCCAGTGATCCAGCCAGACCACTGGATGTTCTTGTAATCCAGACCGAGAACATCGACAACACGCTTGCCGCCTACCAGTTTGTGCACCACGAGCTTCTGTTTGGCGCCGATCGATACTGACTCTGGGACTTCCAGGCCGGTGAACTCGACATCTCCAACGATCAACCGCGTGGCAAACGGATCCCCGCCCGGAGCGAAGTTGTCCAGGAAGCTCGTAAAGCTCATCGTTTATCCCCTTGGATAGGCTGCGCTCGGGGTTCCTGGCATCAGCATGCTGCGGTTCGGATCGAAGCCCTGCGTCCCTGTCCGTGGCTTCGCGGCTTCCTTCGCCATCCGCTGGATTACCACGTCGCTGACTTGTTTGCCGTCGATGTACAGGTTGATGTTCTGTTGGCCATCGGCGCcAGACTTGCCCGGGACCGGAGCCACCAGCGGAGACCATGCTGGCTTTTTCTCCCCGCTTCCACGGAAATCATCGGCGAATGTAGGTTTTTGAGATCTGCATCGATGCTGGAAGAATCAGGTTTGCGCCAGCGATCAGCGTGTTGAAGATCGTCTGCCAGCCGGTCAAGAAGACCAGAGCAAATGACTTGAATGCGCCGCCGATATCGCCCTGAAAGAGTTTTACAAACCCGGTCTTCATGTCGTTCCACATGAGCTTCAATGCTCCGCTGATCTCCTTCCAGTTGTTCCATAGTAGGAAGGCCGCCGCCGCGATCGCCAGATCACTAGGCCAATTGGATTCATGAGGAGTGCACGGCCAAGATTGACCACAGTCATCACAAGATAAGTTCCCATACGCGCTATCCATGGGATCAGCGGTG
lsequence AGCGCCGATACACATGCTCAAACCGCGCATCGAAGTCTTCGATCAAGACGCTGAAGTAGTAGCCGTCCATGTTGAAGTTGAGCGGCTGACCGGCGTCACGCAGCGTCTCCAGCTCCGTGACGCGGTCACCAGCTGTCGCGCCAGTGATCCAGCCAGACCACTGGATGTTCTTGTAATCCAGACCGAGAACATCGACAACACGCTTGCCGCCTACCAGTTTGTGCACCACGAGCTTCTGTTTGGCGCCGATCGATACTGACTCTGGGACTTCCAGGCCGGTGAACTCGACATCTCCAACGATCAACCGCGTGGCAAACGGATCCCCGCCCGGAGCGAAGTTGTCCAGGAAGCTCGTAAAGCTCATCGTTTATCCCCTTGGATAGGCTGCGCTCGGGGTTCCTGGCATCAGCATGCTGCGGTTCGGATCGAAGCCCTGCGTCCCTGTCCGTGGCTTCGCGGCTTCCTTCGCCATCCGCTGGATTACCACGTCGCTGACTTGTTTGCCGTCGATGTACAGGTTGATGTTCTGTTGGCCATCGGCGCcAGACTTGCCCGGGACCGGAGCCACCAGCGGAGACCATGCTGGCTTTTTCTCCCCGCTTCCACGGAAATCATCGGCGAATGTAGGTTTTTGAGATCTGCATCGATGCTGGAAGAATCAGGTTTGCGCCAGCGATCAGCGTGTTGAAGATCGTCTGCCAGCCGGTCAAGAAGACCAGAGCAAATGACTTGAATGCGCCGCCGATATCGCCCTGAAAGAGTTTTACAAACCCGGTCTTCATGTCGTTCCACATGAGCTTCAATGCTCCGCTGATCTCCTTCCAGTTGTTCCATAGTAGGAAGGCCGCCGCCGCGATCGCCAGATCACTAGGCCAATTGGATTCATGAGGAGTGCACGGCCAAGATTGACCACAGTCATCACAAGATAAGTTCCCATACGCGCTATCCATGGGATCAGCGGTG
quality 0x0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B09090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B05050505050E0505050505050505050505050505050505050505050505050505050505050505050505030303030303030303030909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090909090B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B0B
asmbl_id 144
seq_id
com_name
type
method asmg
ed_status
redundancy 1.05
perc_N 0.10
seq# 2
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/25/07 22:59:00
comment
frameshift
seq_name SDSU_RFPERU_013_H05.x01.phd.1
asm_lend 1
asm_rend 589
seq_lend 1
seq_rend 589
best 0
comment
db sdsu
offset 0
lsequence AGCGCCGATACACATGCTCAAACCGCGCATCGAAGTCTTCGATCAAGACGCTGAAGTAGTAGCCGTCCATGTTGAAGTTGAGCGGCTGACCGGCGTCACGCAGCGTCTCCAGCTCCGTGACGCGGTCACCAGCTGTCGCGCCAGTGATCCAGCCAGACCACTGGATGTTCTTGTAATCCAGACCGAGAACATCGACAACACGCTTGCCGCCTACCAGTTTGTGCACCACGAGCTTCTGTTTGGCGCCGATCGATACTGACTCTGGGACTTCCAGGCCGGTGAACTCGACATCTCCAACGATCAACCGCGTGGCAAACGGATCCCCGCCCGGAGCGAAGTTGTCCAGGAAGCTCGTAAAGCTCATCGTTTATCCCCTTGGATAGGCTGCGCTCGGGGTTCCTGGCATCAGCATGCTGCGGTTCGGATCGAAGCCCTGCGTCCCTGTCCGTGGCTTCGCGGCTTCCTTCGCCATCCGCTGGATTACCACGTCGCTGACTTGTTTGCCGTCGATGTACAGGTTGATGTTCTGTTGGCCATCGGCGCCAGACTTGCCCGGGACCGGAGCCACCAGCGGAGACCATGCTGGCTT
seq_name SDSU_RFPERU_005_F02.x01.phd.1
asm_lend 539
asm_rend 963
seq_lend 1
seq_rend 424
best 0
comment
db ABC
offset 538
lsequence GGCGC-AGACTTGCCCGGGACCGGAGCCACCAGCGGAGACCATGCTGGCTTTTTCTCCCCGCTTCCACGGAAATCATCGGCGAATGTAGGTTTTTGAGATCTGCATCGATGCTGGAAGAATCAGGTTTGCGCCAGCGATCAGCGTGTTGAAGATCGTCTGCCAGCCGGTCAAGAAGACCAGAGCAAATGACTTGAATGCGCCGCCGATATCGCCCTGAAAGAGTTTTACAAACCCGGTCTTCATGTCGTTCCACATGAGCTTCAATGCTCCGCTGATCTCCTTCCAGTTGTTCCATAGTAGGAAGGCCGCCGCCGCGATCGCCAGATCACTAGGCCAATTGGATTCATGAGGAGTGCACGGCCAAGATTGACCACAGTCATCACAAGATAAGTTCCCATACGCGCTATCCATGGGATCAGCGGTG
|
sequence ATTGCCATTCTTTCGAAGCGCATTCCCTCTCGTGGCGCTGGCTTCCAGGATCTTTTGGAAGCGCATTCGACGCAACACACCTGCCCGTTTGGGCCGGCCCAACTGGTTCGCAGTGGTAGTGATAGAGGTACTGGTCAATCTGCTTTAATCGACATGAAGATGACGCGAAAAGCGCCCTCCTGCGGATCCGGATCCGTCGCTCACCTGGTCTTGAATGACCTGATGTTCGCAGCCATGGAAGCCGGTTACCGGCTTGCGCCAATCAAGGCAGCATGCACTGCTGAGCAAAAAGCGAGCCAAACTTGTGACCTGATGGCCTTACGCAAT
lsequence ATTGCCATTCTTTCGAAGCGCATTCCCTCTCGTGGCGCTGGCTTCCAGGATCTTTTGGAAGCGCATTCGACGCAACACACCTGCCCGTTT-GGG-CCGGCCC-AACTGGTTCGCAGTGGTAGTGATAGAGGTACTGGTCAATCTGCTTTAATCGACATGAAGATGACGCGAAAAGCGCCCTCCTGCGGATCCGGATCCGTCGCTCACCTGGTCTTGAATGACCTGATGTTCGCAGCCATGGAAGCCGGTTACCGGCTTGCGCCAATCAAGGCAGCATGCACTGCTGAGCAAAAAGCGAGCCAAACTTGTGACCTGATGGCCTTACGCAAT
quality 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
asmbl_id 652
seq_id
com_name
type
method asmg
ed_status
redundancy 2.75
perc_N 0.00
seq# 9
full_cds
cds_start
cds_end
ed_pn GRA
ed_date 08/27/07 18:38:59
comment
frameshift
seq_name 9986984
asm_lend 1
asm_rend 102
seq_lend 1
seq_rend 105
best 0
comment
db sdsu
offset 0
lsequence ATTGCCATTCTTTCGAAGCGCATTCCCTCTCGTGGCGCTGGCTTCCAGGATCTTTTGGAAGCGCATTCGACGCAACACACCTGCCCGTTTCGGGTCCGGCCCGAA
seq_name 9944760
asm_lend 2
asm_rend 109
seq_lend 108
seq_rend 1
best 0
comment
db ABC
offset 1
lsequence TTGCCATTCTTTCGAAGCGCATTCCCTCTCGTGGCGCTGGCTTCCAGGATCTTTTGGAAGCGCATTCGACGCAACACACCTGCCCGTTT-GGG-CCGGCCC-AACTGGTTC
seq_name 9980040
asm_lend 48
asm_rend 154
seq_lend 1
seq_rend 107
best 0
comment
db ABC
offset 47
lsequence GGATCTTTTGGAAGCGCATTCGACGCAACACACCTGCCCGTTT-GGG-CCGGCCC-AACTGGTTCGCAGTGGTAGTGATAGAGGTACTGGTCAATCTGCTTTAATCGACA
seq_name 9956706
asm_lend 50
asm_rend 146
seq_lend 97
seq_rend 1
best 0
comment
db ABC
offset 49
lsequence ATCTTTTGGAAGCGCATTCGACGCAACACACCTGCCCGTTT-GGG-CCGGCCC-AACTGGTTCGCAGTGGTAGTGATAGAGGTACTGGTCAATCTGCTTT
seq_name 9937790
asm_lend 84
asm_rend 191
seq_lend 1
seq_rend 108
best 0
comment
db ABC
offset 83
lsequence CCCGTTT-GGG-CCGGCCC-AACTGGTTCGCAGTGGTAGTGATAGAGGTACTGGTCAATCTGCTTTAATCGACATGAAGATGACGCGAAAAGCGCCCTCCTGCGGATCCGG
seq_name 9976538
asm_lend 120
asm_rend 215
seq_lend 1
seq_rend 96
best 0
comment
db ABC
offset 122
lsequence TGATAGAGGTACTGGTCAATCTGCTTTAATCGACATGAAGATGACGCGAAAAGCGCCCTCCTGCGGATCCGGATCCGTCGCTCACCTGGTCTTGAA
seq_name 9960711
asm_lend 134
asm_rend 229
seq_lend 1
seq_rend 96
best 0
comment
db ABC
offset 136
lsequence GTCAATCTGCTTTAATCGACATGAAGATGACGCGAAAAGCGCCCTCCTGCGGATCCGGATCCGTCGCTCACCTGGTCTTGAATGACCTGATGTTCG
seq_name 9962187
asm_lend 178
asm_rend 273
seq_lend 1
seq_rend 96
best 0
comment
db ZZZ
offset 180
lsequence TCCTGCGGATCCGGATCCGTCGCTCACCTGGTCTTGAATGACCTGATGTTCGCAGCCATGGAAGCCGGTTACCGGCTTGCGCCAATCAAGGCAGCA
seq_name 9970175
asm_lend 239
asm_rend 327
seq_lend 1
seq_rend 89
best 0
comment
db ABC
offset 241
lsequence AAGCCGGTTACCGGCTTGCGCCAATCAAGGCAGCATGCACTGCTGAGCAAAAAGCGAGCCAAACTTGTGACCTGATGGCCTTACGCAAT
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