File: crypto.sim4-3

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seq1 = cn416, 630 bp
seq2 = Contig147.fa (>Contig147), 1086 bp


36-132  (191-286)   89% <-
133-191  (343-401)   93%

      0     .    :    .    :    .    :    .    :    .    :
     36 AAAGCCATGCAATGCATCCCATGATACCAAAGATAAAATATCCAAAAATC
        |||||||||||||||||||-||||||||||||| || |||||||||||||
    191 AAAGCCATGCAATGCATCC ATGATACCAAAGACAATATATCCAAAAATC

     50     .    :    .    :    .    :    .    :    .    :
     86 CATGACCGATCCTGATGCAATAACCAAGAGACCGTTTATCCCGGGAA   
         | ||  |||| | ||||||||||||||||||| |||||||||||||<<<
    240 TAAGATTGATCATCATGCAATAACCAAGAGACCCTTTATCCCGGGAACTA

    100     .    :    .    :    .    :    .    :    .    :
    133       TGCCACAACGTAGTCCTTCTGTACATCCTGAACATTTCCATCAT
        ...<<<|||||||||||||||||| |||||||||||||||||||||||||
    290 ...CACTGCCACAACGTAGTCCTTTTGTACATCCTGAACATTTCCATCAT

    150     .    :    .
    177 CATCAACGAA AAGTA
        |||| |||||-||-||
    387 CATCTACGAACAA TA