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BLASTN 2.0MP-WashU [04-May-2006] [macosx-10.2-g4-ILP32F64 2006-05-07T21:56:24]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Notice: this program and its default parameter settings are optimized to find
nearly identical sequences rapidly. To identify weak protein similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= ref|NM_003201.1| Homo sapiens transcription factor A, mitochondrial
(TFAM), mRNA
(1936 letters)
>Unfiltered+1
CCTCGCTAGTGGCGGGCATGATAACACACGCCGGAGGGTCGCACGCGGGTTCCAGTTGTG
ATTGCTGGAGTTGTGTATTGCCAGGAGGCTCTCCGAGATTGGGGTCGGGTCACTGCCTCA
TCCACCGGAGCGATGGCGTTTCTCCGAAGCATGTGGGGCGTGCTGAGTGCCCTGGGAAGG
TCTGGAGCAGAGCTGTGCACCGGCTGTGGAAGTCGACTGCGCTCCCCCTTCAGTTTTGTG
TATTTACCGAGGTGGTTTTCATCTGTCTTGGCAAGTTGTCCAAAGAAACCTGTAAGTTCT
TACCTTCGATTTTCTAAAGAACAACTACCCATATTTAAAGCTCAGAACCCAGATGCAAAA
ACTACAGAACTAATTAGAAGAATTGCCCAGCGTTGGAGGGAACTTCCTGATTCAAAGAAA
AAAATATATCAAGATGCTTATAGGGCGGAGTGGCAGGTATATAAAGAAGAGATAAGCAGA
TTTAAAGAACAGCTAACTCCAAGTCAGATTATGTCTTTGGAAAAAGAAATCATGGACAAA
CATTTAAAAAGGAAAGCTATGACAAAAAAAAAAGAGTTAACACTGCTTGGAAAACCAAAA
AGACCTCGTTCAGCTTATAACGTTTATGTAGCTGAAAGATTCCAAGAAGCTAAGGGTGAT
TCACCGCAGGAAAAGCTGAAGACTGTAAAGGAAAACTGGAAAAATCTGTCTGACTCTGAA
AAGGAATTATATATTCAGCATGCTAAAGAGGACGAAACTCGTTATCATAATGAAATGAAG
TCTTGGGAAGAACAAATGATTGAAGTTGGACGAAAGGATCTTCTACGTCGCACAATAAAG
AAACAACGAAAATATGGTGCTGAGGAGTGTTAAAAGTAGAAGATTGAGATGTGTTCACAA
TGGATAGGCACAGGAAACCAGTTAGGTCTCAATACCTGAAGCTATCGTAAAATTAAGAAA
GGATAAAGTTGGTAAACCTTTTATATTTAGTATCTTTTTATTCAGCTCATGGACTTCTGC
CAGCATAATACTTGCTTTGGAAAACCCAGATAAAGGTTCATGCAAACTTTATTTTGTGTT
TAGGAACTACTGAGGATCAGAGTAATCCAAGCAAATGTGAATCATTTTACCTTTGACAAA
GGTAAATCAGACTATGAAGTTTTTTTTATACAGGATGATGACTATGGAAAGAGTACTCTT
GTTTCCTTATATTATGGAGGCAGGAGTTTCGTTTTCAAAATTGTTACAAATTGTAGAAGC
CACGGTGTTCTGTGATATAAGTGTGTGTTTTTCATAAAGCAGGCAGAACTCATCTAGGTA
AATTACAGTTCCTAGGTATAATTCACATTGTATTCAGAGTTGATGGTTGTACATATAAGT
GATTGCTGGTTTTAGTTGCAACTTTGTATAAAAGGGACTGAGAAATTTATAAACTTTTTT
CTTACTGTCTTTTTTCTAAAGTAAAAACAAAGAAATTATGTGCCAGATTTATGCATATTA
TTTTATGTTGCATAGAATAAAATTTTTAATCTTTAATTTTACATTTCCTAAATATATTTT
AAGACGAAACATTTGTTCTATAGCTTTTCCCTTTTTTTAAGTAAGGAATTTTATTTTTTT
CTGAATTATTTTCTCTCGTGAGTATATTGATCCAGAAAGAAAACTTGTATTATGTGTGTT
TTAAAATGAGAAATCTAAAAAACGAAAAGTCTCCAAAGTCTCTGGAATTTGAAACACTTT
GCATAACGTATAAAAGCCTGTTTAAGAGACAGCCAACTATGGCCTGTGGATCAAATCCAG
CCTGCTGCCTGCTTTTTATGGCCTGTGAGCTAGGAATTGTGTTTATAATTTTAAATGTTT
TTTTTTAAAGACTTTTATGATACTTGAAAATTAACATGAATATTTAGTGTTCATAAATAA
AGTTTGTTGAAACACA
>Unfiltered-1
TGTGTTTCAACAAACTTTATTTATGAACACTAAATATTCATGTTAATTTTCAAGTATCAT
AAAAGTCTTTAAAAAAAAACATTTAAAATTATAAACACAATTCCTAGCTCACAGGCCATA
AAAAGCAGGCAGCAGGCTGGATTTGATCCACAGGCCATAGTTGGCTGTCTCTTAAACAGG
CTTTTATACGTTATGCAAAGTGTTTCAAATTCCAGAGACTTTGGAGACTTTTCGTTTTTT
AGATTTCTCATTTTAAAACACACATAATACAAGTTTTCTTTCTGGATCAATATACTCACG
AGAGAAAATAATTCAGAAAAAAATAAAATTCCTTACTTAAAAAAAGGGAAAAGCTATAGA
ACAAATGTTTCGTCTTAAAATATATTTAGGAAATGTAAAATTAAAGATTAAAAATTTTAT
TCTATGCAACATAAAATAATATGCATAAATCTGGCACATAATTTCTTTGTTTTTACTTTA
GAAAAAAGACAGTAAGAAAAAAGTTTATAAATTTCTCAGTCCCTTTTATACAAAGTTGCA
ACTAAAACCAGCAATCACTTATATGTACAACCATCAACTCTGAATACAATGTGAATTATA
CCTAGGAACTGTAATTTACCTAGATGAGTTCTGCCTGCTTTATGAAAAACACACACTTAT
ATCACAGAACACCGTGGCTTCTACAATTTGTAACAATTTTGAAAACGAAACTCCTGCCTC
CATAATATAAGGAAACAAGAGTACTCTTTCCATAGTCATCATCCTGTATAAAAAAAACTT
CATAGTCTGATTTACCTTTGTCAAAGGTAAAATGATTCACATTTGCTTGGATTACTCTGA
TCCTCAGTAGTTCCTAAACACAAAATAAAGTTTGCATGAACCTTTATCTGGGTTTTCCAA
AGCAAGTATTATGCTGGCAGAAGTCCATGAGCTGAATAAAAAGATACTAAATATAAAAGG
TTTACCAACTTTATCCTTTCTTAATTTTACGATAGCTTCAGGTATTGAGACCTAACTGGT
TTCCTGTGCCTATCCATTGTGAACACATCTCAATCTTCTACTTTTAACACTCCTCAGCAC
CATATTTTCGTTGTTTCTTTATTGTGCGACGTAGAAGATCCTTTCGTCCAACTTCAATCA
TTTGTTCTTCCCAAGACTTCATTTCATTATGATAACGAGTTTCGTCCTCTTTAGCATGCT
GAATATATAATTCCTTTTCAGAGTCAGACAGATTTTTCCAGTTTTCCTTTACAGTCTTCA
GCTTTTCCTGCGGTGAATCACCCTTAGCTTCTTGGAATCTTTCAGCTACATAAACGTTAT
AAGCTGAACGAGGTCTTTTTGGTTTTCCAAGCAGTGTTAACTCTTTTTTTTTTGTCATAG
CTTTCCTTTTTAAATGTTTGTCCATGATTTCTTTTTCCAAAGACATAATCTGACTTGGAG
TTAGCTGTTCTTTAAATCTGCTTATCTCTTCTTTATATACCTGCCACTCCGCCCTATAAG
CATCTTGATATATTTTTTTCTTTGAATCAGGAAGTTCCCTCCAACGCTGGGCAATTCTTC
TAATTAGTTCTGTAGTTTTTGCATCTGGGTTCTGAGCTTTAAATATGGGTAGTTGTTCTT
TAGAAAATCGAAGGTAAGAACTTACAGGTTTCTTTGGACAACTTGCCAAGACAGATGAAA
ACCACCTCGGTAAATACACAAAACTGAAGGGGGAGCGCAGTCGACTTCCACAGCCGGTGC
ACAGCTCTGCTCCAGACCTTCCCAGGGCACTCAGCACGCCCCACATGCTTCGGAGAAACG
CCATCGCTCCGGTGGATGAGGCAGTGACCCGACCCCAATCTCGGAGAGCCTCCTGGCAAT
ACACAACTCCAGCAATCACAACTGGAACCCGCGTGCGACCCTCCGGCGTGTGTTATCATG
CCCGCCACTAGCGAGG
Database: NM_003201.fa
1 sequences; 1936 total letters.
Searching done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ref|NM_003201.1| Homo sapiens transcription factor A, mit... 9680 0. 1
>ref|NM_003201.1| Homo sapiens transcription factor A, mitochondrial (TFAM),
mRNA
Length = 1936
Plus Strand HSPs:
Score = 9680 (1458.4 bits), Expect = 0., P = 0.
Identities = 1936/1936 (100%), Positives = 1936/1936 (100%), Strand = Plus / Plus
Query: 1 CCTCGCTAGTGGCGGGCATGATAACACACGCCGGAGGGTCGCACGCGGGTTCCAGTTGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 CCTCGCTAGTGGCGGGCATGATAACACACGCCGGAGGGTCGCACGCGGGTTCCAGTTGTG 60
Query: 61 ATTGCTGGAGTTGTGTATTGCCAGGAGGCTCTCCGAGATTGGGGTCGGGTCACTGCCTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ATTGCTGGAGTTGTGTATTGCCAGGAGGCTCTCCGAGATTGGGGTCGGGTCACTGCCTCA 120
Query: 121 TCCACCGGAGCGATGGCGTTTCTCCGAAGCATGTGGGGCGTGCTGAGTGCCCTGGGAAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 TCCACCGGAGCGATGGCGTTTCTCCGAAGCATGTGGGGCGTGCTGAGTGCCCTGGGAAGG 180
Query: 181 TCTGGAGCAGAGCTGTGCACCGGCTGTGGAAGTCGACTGCGCTCCCCCTTCAGTTTTGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 TCTGGAGCAGAGCTGTGCACCGGCTGTGGAAGTCGACTGCGCTCCCCCTTCAGTTTTGTG 240
Query: 241 TATTTACCGAGGTGGTTTTCATCTGTCTTGGCAAGTTGTCCAAAGAAACCTGTAAGTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 TATTTACCGAGGTGGTTTTCATCTGTCTTGGCAAGTTGTCCAAAGAAACCTGTAAGTTCT 300
Query: 301 TACCTTCGATTTTCTAAAGAACAACTACCCATATTTAAAGCTCAGAACCCAGATGCAAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 TACCTTCGATTTTCTAAAGAACAACTACCCATATTTAAAGCTCAGAACCCAGATGCAAAA 360
Query: 361 ACTACAGAACTAATTAGAAGAATTGCCCAGCGTTGGAGGGAACTTCCTGATTCAAAGAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ACTACAGAACTAATTAGAAGAATTGCCCAGCGTTGGAGGGAACTTCCTGATTCAAAGAAA 420
Query: 421 AAAATATATCAAGATGCTTATAGGGCGGAGTGGCAGGTATATAAAGAAGAGATAAGCAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 AAAATATATCAAGATGCTTATAGGGCGGAGTGGCAGGTATATAAAGAAGAGATAAGCAGA 480
Query: 481 TTTAAAGAACAGCTAACTCCAAGTCAGATTATGTCTTTGGAAAAAGAAATCATGGACAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 TTTAAAGAACAGCTAACTCCAAGTCAGATTATGTCTTTGGAAAAAGAAATCATGGACAAA 540
Query: 541 CATTTAAAAAGGAAAGCTATGACAAAAAAAAAAGAGTTAACACTGCTTGGAAAACCAAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 CATTTAAAAAGGAAAGCTATGACAAAAAAAAAAGAGTTAACACTGCTTGGAAAACCAAAA 600
Query: 601 AGACCTCGTTCAGCTTATAACGTTTATGTAGCTGAAAGATTCCAAGAAGCTAAGGGTGAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 AGACCTCGTTCAGCTTATAACGTTTATGTAGCTGAAAGATTCCAAGAAGCTAAGGGTGAT 660
Query: 661 TCACCGCAGGAAAAGCTGAAGACTGTAAAGGAAAACTGGAAAAATCTGTCTGACTCTGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 TCACCGCAGGAAAAGCTGAAGACTGTAAAGGAAAACTGGAAAAATCTGTCTGACTCTGAA 720
Query: 721 AAGGAATTATATATTCAGCATGCTAAAGAGGACGAAACTCGTTATCATAATGAAATGAAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 AAGGAATTATATATTCAGCATGCTAAAGAGGACGAAACTCGTTATCATAATGAAATGAAG 780
Query: 781 TCTTGGGAAGAACAAATGATTGAAGTTGGACGAAAGGATCTTCTACGTCGCACAATAAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 TCTTGGGAAGAACAAATGATTGAAGTTGGACGAAAGGATCTTCTACGTCGCACAATAAAG 840
Query: 841 AAACAACGAAAATATGGTGCTGAGGAGTGTTAAAAGTAGAAGATTGAGATGTGTTCACAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 AAACAACGAAAATATGGTGCTGAGGAGTGTTAAAAGTAGAAGATTGAGATGTGTTCACAA 900
Query: 901 TGGATAGGCACAGGAAACCAGTTAGGTCTCAATACCTGAAGCTATCGTAAAATTAAGAAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 TGGATAGGCACAGGAAACCAGTTAGGTCTCAATACCTGAAGCTATCGTAAAATTAAGAAA 960
Query: 961 GGATAAAGTTGGTAAACCTTTTATATTTAGTATCTTTTTATTCAGCTCATGGACTTCTGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 GGATAAAGTTGGTAAACCTTTTATATTTAGTATCTTTTTATTCAGCTCATGGACTTCTGC 1020
Query: 1021 CAGCATAATACTTGCTTTGGAAAACCCAGATAAAGGTTCATGCAAACTTTATTTTGTGTT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 CAGCATAATACTTGCTTTGGAAAACCCAGATAAAGGTTCATGCAAACTTTATTTTGTGTT 1080
Query: 1081 TAGGAACTACTGAGGATCAGAGTAATCCAAGCAAATGTGAATCATTTTACCTTTGACAAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 TAGGAACTACTGAGGATCAGAGTAATCCAAGCAAATGTGAATCATTTTACCTTTGACAAA 1140
Query: 1141 GGTAAATCAGACTATGAAGTTTTTTTTATACAGGATGATGACTATGGAAAGAGTACTCTT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 GGTAAATCAGACTATGAAGTTTTTTTTATACAGGATGATGACTATGGAAAGAGTACTCTT 1200
Query: 1201 GTTTCCTTATATTATGGAGGCAGGAGTTTCGTTTTCAAAATTGTTACAAATTGTAGAAGC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 GTTTCCTTATATTATGGAGGCAGGAGTTTCGTTTTCAAAATTGTTACAAATTGTAGAAGC 1260
Query: 1261 CACGGTGTTCTGTGATATAAGTGTGTGTTTTTCATAAAGCAGGCAGAACTCATCTAGGTA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 CACGGTGTTCTGTGATATAAGTGTGTGTTTTTCATAAAGCAGGCAGAACTCATCTAGGTA 1320
Query: 1321 AATTACAGTTCCTAGGTATAATTCACATTGTATTCAGAGTTGATGGTTGTACATATAAGT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 AATTACAGTTCCTAGGTATAATTCACATTGTATTCAGAGTTGATGGTTGTACATATAAGT 1380
Query: 1381 GATTGCTGGTTTTAGTTGCAACTTTGTATAAAAGGGACTGAGAAATTTATAAACTTTTTT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 GATTGCTGGTTTTAGTTGCAACTTTGTATAAAAGGGACTGAGAAATTTATAAACTTTTTT 1440
Query: 1441 CTTACTGTCTTTTTTCTAAAGTAAAAACAAAGAAATTATGTGCCAGATTTATGCATATTA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 CTTACTGTCTTTTTTCTAAAGTAAAAACAAAGAAATTATGTGCCAGATTTATGCATATTA 1500
Query: 1501 TTTTATGTTGCATAGAATAAAATTTTTAATCTTTAATTTTACATTTCCTAAATATATTTT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 TTTTATGTTGCATAGAATAAAATTTTTAATCTTTAATTTTACATTTCCTAAATATATTTT 1560
Query: 1561 AAGACGAAACATTTGTTCTATAGCTTTTCCCTTTTTTTAAGTAAGGAATTTTATTTTTTT 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 AAGACGAAACATTTGTTCTATAGCTTTTCCCTTTTTTTAAGTAAGGAATTTTATTTTTTT 1620
Query: 1621 CTGAATTATTTTCTCTCGTGAGTATATTGATCCAGAAAGAAAACTTGTATTATGTGTGTT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 CTGAATTATTTTCTCTCGTGAGTATATTGATCCAGAAAGAAAACTTGTATTATGTGTGTT 1680
Query: 1681 TTAAAATGAGAAATCTAAAAAACGAAAAGTCTCCAAAGTCTCTGGAATTTGAAACACTTT 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 TTAAAATGAGAAATCTAAAAAACGAAAAGTCTCCAAAGTCTCTGGAATTTGAAACACTTT 1740
Query: 1741 GCATAACGTATAAAAGCCTGTTTAAGAGACAGCCAACTATGGCCTGTGGATCAAATCCAG 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 GCATAACGTATAAAAGCCTGTTTAAGAGACAGCCAACTATGGCCTGTGGATCAAATCCAG 1800
Query: 1801 CCTGCTGCCTGCTTTTTATGGCCTGTGAGCTAGGAATTGTGTTTATAATTTTAAATGTTT 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 CCTGCTGCCTGCTTTTTATGGCCTGTGAGCTAGGAATTGTGTTTATAATTTTAAATGTTT 1860
Query: 1861 TTTTTTAAAGACTTTTATGATACTTGAAAATTAACATGAATATTTAGTGTTCATAAATAA 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 TTTTTTAAAGACTTTTATGATACTTGAAAATTAACATGAATATTTAGTGTTCATAAATAA 1920
Query: 1921 AGTTTGTTGAAACACA 1936
||||||||||||||||
Sbjct: 1921 AGTTTGTTGAAACACA 1936
Parameters:
echofilter
ctxfactor=2.00
E=10
Query ----- As Used ----- ----- Computed ----
Strand MatID Matrix name Lambda K H Lambda K H
+1 0 +5,-4 0.192 0.182 0.357 same same same
Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a
-1 0 +5,-4 0.192 0.182 0.357 same same same
Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a
Query
Strand MatID Length Eff.Length E S W T X E2 S2
+1 0 1936 1936 9.2 89 11 n/a 73 0.042 83
134 2.1 89
-1 0 1936 1936 9.2 89 11 n/a 73 0.042 83
134 2.1 89
Statistics:
Database: NM_003201.fa
Title: NM_003201.fa
Posted: 7:39:50 PM CET Nov 2, 2007
Created: 7:39:50 PM CET Nov 2, 2007
Format: XDF-1
# of letters in database: 1936
# of sequences in database: 1
# of database sequences satisfying E: 1
No. of states in DFA: 257 (257 KB)
Total size of DFA: 344 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 1
Search cpu time: 0.00u 0.01s 0.01t Elapsed: 00:00:00
Total cpu time: 0.00u 0.01s 0.01t Elapsed: 00:00:00
Start: Fri Nov 2 19:42:26 2007 End: Fri Nov 2 19:42:26 2007
|
