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genewise $Name: not supported by cvs2svn $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SINFRUP00000067802
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Scaffold_2042.1
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 2054.68 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SINFRUP00000067 1 LDEDQLSHSSSRLSRSPLKGVKKAKIMQCKVTLLDNSDYTIDVE
LDEDQLSHSSSRLSRSPLKGVKKAKIMQCKVTLLDNSDYTIDVE
LDEDQLSHSSSRLSRSPLKGVKKAKIMQCKVTLLDNSDYTIDVE
Scaffold_2042.122265 cgggcttcaaacctatccaggaagaaactagatcgatgtaaggg
taaaatcaggggtcgcctagtaacattagatcttaacaactata
gcgcgactccttccgtcgaacgaggaggtacaggcccccattag
SINFRUP00000067 45 KGARGQMLFDKVCEHLNLLERD
KGARGQMLFDKVCEHLNLLERD
KGARGQMLFDKVCEHLNLLERD
Scaffold_2042.122397 GTGAGCA Intron 1 CAGaggagcactgagtgccatcgag
<0-----[22397 : 24223]-0>agcggatttaatgaatattaga
aacgcagcttaatgtatacgac
SINFRUP00000067 67 YFGITYRDVENQK NWLDPSKEL
YFGITYRDVENQK NWLDPSKEL
YFGITYRDVENQK NWLDPSKEL
Scaffold_2042.124290 ttgaatagggacaGTAAATA Intron 2 CAGatcgctagc
atgtcagataaaa<0-----[24329 : 24470]-0>agtaccaat
ctccatactgtgg tggtttagg
SINFRUP00000067 89 KKQIR GPWNFAFNVKFYPP
KKQIR GPWNFAFNVKFYPP
KKQIR T:T[act] GPWNFAFNVKFYPP
Scaffold_2042.124498 aacacAGTAAGCA Intron 3 CAGCTgctatgtagattcc
aaatg <1-----[24514 : 24586]-1> gcgatctatatacc
aggcg tcgctcctcgtcta
SINFRUP00000067 109 DPVQLAEDIT YYLCLQLRD
DPVQLAEDIT YYLCLQLRD
DPVQLAEDIT R:R[agg] YYLCLQLRD
Scaffold_2042.124631 gcgccgggaaAGGTAAGAG Intron 4 CAGGttttcccag
actatcaatc <2-----[24663 : 24816]-2> aatgtatga
ttcggtgcca ctgtgggat
SINFRUP00000067 129 DVVSGRLPCSFATHTVLGSYTVQSELGDYDHEELGSDYLSELRLAPNQT
DVVSGRLPCSFATHTVLGSYTVQSELGDYDHEELGSDYLSELRLAPNQT
DVVSGRLPCSFATHTVLGSYTVQSELGDYDHEELGSDYLSELRLAPNQT
Scaffold_2042.124845 gggtgccctttgacagcgttagctgcggtgcggcgagtcagcccgcaca
attcggtcgctccacttgcactacatgaaaaaatggaatgatgtccaac
tgtgctgccttcccatactcgggtagactctgggccccctggctaccgc
SINFRUP00000067 178 KELEEKVMELHKSY GMTPG
KELEEKVMELHKSY GMTPG
KELEEKVMELHKSY K:K[aag] GMTPG
Scaffold_2042.124992 agcggagagccaatAAGTTGGTT Intron 5 CAGGgaacg
aataaattataaga <2-----[25036 : 25161]-2> gtccg
agtgagcgaccgcc ggatg
SINFRUP00000067 198 EAEMHFLENAKKLSMYGVDLHHAK
EAEMHFLENAKKLSMYGVDLHHAK
EAEMHFLENAKKLSMYGVDLHHAK
Scaffold_2042.125178 gggactcgagaactatgggcccgaGTAATAA Intron 6
acatattaacaatctagtataaca<0-----[25250 : 26185]
aaggccgatcgggcgccttccctg
SINFRUP00000067 222 DSEGVEIMLGVCSSGLLIYRDRLRINRFAWPKILKISYKRNNFYIK
DSEGVEIMLGVCSSGLLIYRDRLRINRFAWPKILKISYKRNNFYIK
DSEGVEIMLGVCSSGLLIYRDRLRINRFAWPKILKISYKRNNFYIK
Scaffold_2042.126183 TAGgtggggaacggttagccatagatcaaatgtcaacaattaaaattaa
-0>acagtatttgtgcggtttagagtgtagtcgcattatcaagaatata
ctgatgcggatcgccgtccacgggccgttgtaacgttcggtcccca
SINFRUP00000067 268 IRPGE FEQFESTIGFKLPNHRA
IRPGE FEQFESTIGFKLPNHRA
IRPGE FEQFESTIGFKLPNHRA
Scaffold_2042.126324 accggGTAATTA Intron 7 CAGtgctgaaagtaccaccg
tgcga<0-----[26339 : 26457]-0>taatagctgtatcaagc
ctgcg tggtgcgctcgtctttt
SINFRUP00000067 290 AKRLWKVCVEHHTFFRQVMKEVL
AKRLWKVCVEHHTFFRQVMKEVL
AKRLWKVCVEHHTFFRQVMKEVL G:G[ggg]
Scaffold_2042.126509 gaactagtggccattacgaaggcGGGTTGCCA Intron 8
cagtgatgtaaacttgattaatt <2-----[26580 : 26864]
cagcggctggtccccgacggggg
SINFRUP00000067 313 LVSPEAPPKKFLSLGSKFRYSGRTQAQTRRASSQIIRPAPFFERS
LVSPEAPPKKFLSLGSKFRYSGRTQAQTRRASSQIIRPAPFFERS
LVSPEAPPKKFLSLGSKFRYSGRTQAQTRRASSQIIRPAPFFERS
Scaffold_2042.126862 CAGGcgtcggccaatcacgtatctagaacgcaccgatcaaacgcttgct
-2> ttccacccaattgtgcatgagggcacacggcgcattgcccttagc
agttggtaggcgttctgtcctcaggtgcagcctgctattgctgtc
SINFRUP00000067 359 SSKRYNMSRSLDG SSADGV
SSKRYNMSRSLDG SSADGV
SSKRYNMSRSLDG D:D[gac] SSADGV
Scaffold_2042.127001 taactaatcatggGGTAGGAT Intron 9 AAGACatgggg
cgagaatcggtag <1-----[27041 : 27314]-1> gccagt
ccacccgcttata ctttag
SINFRUP00000067 379 ARVKGNIITTVTPERKAEEENGEQEDAKNDAADKPDPAASSPLHQETKV
ARVKGNIITTVTPERKAEEENGEQEDAKNDAADKPDPAASSPLHQETKV
ARVKGNIITTVTPERKAEEENGEQEDAKNDAADKPDPAASSPLHQETKV
Scaffold_2042.127335 gcgagaaaaagacgaaggggaggcgggaaggggacgcggtaccccgaag
cgtagattcctccagacaaaagaaaacaaaccaacaccccgctaaacat
tatgatccctatagaaaaagcagggtcgctgacgactttcctccaaaga
SINFRUP00000067 428 TL DPLRSELSLPSSPISFT
TL DPLRSELSLPSSPISFT
TL D:D[gac] DPLRSELSLPSSPISFT
Scaffold_2042.127482 acGGTCAACC Intron 10 CAGACgccctgctccttcatta
ct <1-----[27489 : 28576]-1> actgcatctcccctctc
aa tccctgctccattcact
SINFRUP00000067 448 KIRRRRRENAHKRASSVSPGKSSTGRCRRQALADRKAALLDEQALLLVA
KIRRRRRENAHKRASSVSPGKSSTGRCRRQALADRKAALLDEQALLLVA
KIRRRRRENAHKRASSVSPGKSSTGRCRRQALADRKAALLDEQALLLVA
Scaffold_2042.128630 aaccacagagcacgttgacgaaaagctcccgcggcaggccggcgtccgg
atgggggaacaagccctgcgaggcgggggactcagaccttaaacttttc
aagggcggcatgaccactacgccagtcctgctttcatggatgacggcga
SINFRUP00000067 497 RKQRLEQGRNHGGTLFSFSLHLPDLSSVLDEDGYITFPDLSKMRFLPEC
RKQRLEQGRNHGGTLFSFSLHLPDLSSVLDEDGYITFPDLSKMRFLPEC
RKQRLEQGRNHGGTLFSFSLHLPDLSSVLDEDGYITFPDLSKMRFLPEC
Scaffold_2042.128777 cacacgcgaacggacttttccccgcttgtggggtaatcgctaactccgt
gaagtaaggaaggcttctctatcatccttaaagatctcatcatgttcag
aggagggcgttccacccccgcgccgctcgcactccccctgcagccctgt
SINFRUP00000067 546 AQNFLPIKS YLCSLLLFTL
AQNFLPIKS YLCSLLLFTL
AQNFLPIKS P:P[cct] YLCSLLLFTL
Scaffold_2042.128924 gcatccaatCCGTCACTC Intron 11 CAGTtcttccctac
caattctac <2-----[28953 : 30816]-2> atgcttttct
ggccgccga ttcggatctc
SINFRUP00000067 566 FTFFFLCLLNSLHLSSFAVSRKQTRNLKYRLRYTGLTFIDRPCSMHQIL
FTFFFLCLLNSLHLSSFAVSRKQTRNLKYRLRYTGLTFIDRPCSMHQIL
FTFFFLCLLNSLHLSSFAVSRKQTRNLKYRLRYTGLTFIDRPCSMHQIL
Scaffold_2042.130848 tatttctccatccctttggacacaaacatacatagcatagccttaccac
tcttttgttactatcctctggaacgataagtgacgtcttagcgctaatt
cccttttaatttccctctctgggggtgacacgctgcttctgccggtact
SINFRUP00000067 615 DILTRCPEPSASTISHFAVSILAYCF
DILTRCPEPSASTISHFAVSILAYCF
DILTRCPEPSASTISHFAVSILAYCF
Scaffold_2042.130995 gacaatcgctgtaaactggtatgttt
attcggcaccccctgatctcttcagt
cccaaccgagaccctcttcccgtccc
SINFRUP00000067 641 EVVKHQTNISELKRSFLET
EVVKHQTNISELKRSFLET
S:S[tct] EVVKHQTNISELKRSFLET
Scaffold_2042.131073 TGTTGTCA Intron 12 CAGCTgggaccaaaagcacttcga
<1-----[31074 : 31980]-1> attaaacatgatagcttac
ggcacgccccaggcccggg
SINFRUP00000067 661 GDGTQGPTEWEKRLSSSPMCSPRFDEAPMIEPLDVSV
GDGTQGPTEWEKRLSSSPMCSPRFDEAPMIEPLDVSV
GDGTQGPTEWEKRLSSSPMCSPRFDEAPMIEPLDVSV
Scaffold_2042.132040 gggacgcagtgaactttcattcatgggcaagccggag
gagcagccagaagtcccctgccgtaaccttactatgt
ttcgacgcagggggcgtcgcaaattgaggtgggtacc
SINFRUP00000067 698 ERTSDSQEDVSERSMLKVS
ERTSDSQEDVSERSMLKVS
D:D[gat] ERTSDSQEDVSERSMLKVS
Scaffold_2042.132151 GGTCTGCA Intron 13 CAGATgcatgtcgggtgatataga
<1-----[32152 : 33223]-1> agccacaaatcagcttatg
gactccggcggggagggcc
SINFRUP00000067 718 PRAVTQEVSQAISDKKGRLIILKDAEHKEEDEEPGEAEGVEKELPPSKE
PRAVTQEVSQAISDKKGRLIILKDAEHKEEDEEPGEAEGVEKELPPSKE
PRAVTQEVSQAISDKKGRLIILKDAEHKEEDEEPGEAEGVEKELPPSKE
Scaffold_2042.133283 caggacggtcgaagaagacaatagggcagggggcgggggggagtcctag
cgctcaatcactgaaaggttttaacaaaaaaaacgacagtaaatcccaa
cattagagggcctcggagttcgattataggcaacagtacgggagtaaag
SINFRUP00000067 767 KEMVKEDAADVLASITREIKKQHPKVEIKTNGTQQINGSDSPKKAMVSW
KEMVKEDAADVLASITREIKKQHPKVEIKTNGTQQINGSDSPKKAMVSW
KEMVKEDAADVLASITREIKKQHPKVEIKTNGTQQINGSDSPKKAMVSW
Scaffold_2042.133430 agagaggggggcgtaaagaaacccaggaaaagaccaagagtcaagagtt
aattaaaccattcctcgataaaacatatacagcaataggaccaacttcg
aagtaacctttgctaagacgggtgggaaatccgagtcttcgtagcgggg
SINFRUP00000067 816 ISEEVKTVATKEVSEGESVEAPQQTAEIFTFEEEQSKSSPTQITVSESS
ISEEVKTVATKEVSEGESVEAPQQTAEIFTFEEEQSKSSPTQITVSESS
ISEEVKTVATKEVSEGESVEAPQQTAEIFTFEEEQSKSSPTQITVSESS
Scaffold_2042.133577 atgggaaggaaggagggagggcccaggatatgggctatacacaagtgtt
tcaatactccaatgagagtaccaaccattctaaaacacgccatctcacc
ctggggtcgagaatgagctagggagggccctagggagccgcgcattata
SINFRUP00000067 865 ASFAVV LDTTDAGTKEMPV
ASFAVV LDTTDAGTKEMPV
ASFAVV H:H[cat] LDTTDAGTKEMPV
Scaffold_2042.133724 gttgggCAGTATAAA Intron 14 GAGTcgaagggaagacg
cctctt <2-----[33744 : 35243]-2> taccacgcaatct
tttgga tcctttacaggcg
SINFRUP00000067 885 IHTETKTITYESAE VDTNGDLD
IHTETKTITYESAE VDTNGDLD
IHTETKTITYESAE VDTNGDLD
Scaffold_2042.135284 acagaaaaatgtggGTACACA Intron 15 CAGggaaggtg
tacacactcaacca<0-----[35326 : 36271]-0>tacagata
ccagaatcccgtag tctttcgc
SINFRUP00000067 907 PGVLLSAQTITSEITSTTTTTHITK
PGVLLSAQTITSEITSTTTTTHITK
PGVLLSAQTITSEITSTTTTTHITK
Scaffold_2042.136296 cggccagcaaatgaaaaaaaacaaaGTCAGTT Intron 16
cgtttgcactccatcgcccccatca<0-----[36371 : 36567]
cttcgttgcctaatccccacaccag
SINFRUP00000067 932 MVKGGISETRIEKRIVISGDADIDHDQ
MVKGGISETRIEKRIVISGDADIDHDQ
MVKGGISETRIEKRIVISGDADIDHDQ
Scaffold_2042.136565 CAGagaggatgaaagaaagatggggagcgc
-0>ttaggtcacgtaagtttcgacataaaa
ggaagtaaaacgagcccaatacctctg
SINFRUP00000067 959 ALAQAIKEAKEQHPDMSVTKVV
ALAQAIKEAKEQHPDMSVTKVV
ALAQAIKEAKEQHPDMSVTKVV
Scaffold_2042.136649 GTCTCTT Intron 17 CAGgcgcgaaggagcccgatgaagg
<0-----[36649 : 36954]-0>ctcactaacaaaacatctcatt
tgtgcaagtaagttcgagcaag
SINFRUP00000067 981 VHKETEITPEEGED
VHKETEITPEEGED
VHKETEITPEEGED
Scaffold_2042.137021 gcagagaacggggg
taaacatccaagaa
atagagcgaagggc
//
Gene 1
Gene 22265 37062
Exon 22265 22396 phase 0
Supporting 22265 22396 1 44
Exon 24224 24328 phase 0
Supporting 24224 24328 45 79
Exon 24471 24513 phase 0
Supporting 24471 24512 80 93
Exon 24587 24662 phase 1
Supporting 24589 24660 95 118
Exon 24817 25035 phase 2
Supporting 24818 25033 120 191
Exon 25162 25249 phase 2
Supporting 25163 25249 193 221
Exon 26186 26338 phase 0
Supporting 26186 26338 222 272
Exon 26458 26579 phase 0
Supporting 26458 26577 273 312
Exon 26865 27040 phase 2
Supporting 26866 27039 314 371
Exon 27315 27488 phase 1
Supporting 27317 27487 373 429
Exon 28577 28952 phase 1
Supporting 28579 28950 431 554
Exon 30817 31073 phase 2
Supporting 30818 31072 556 640
Exon 31981 32151 phase 1
Supporting 31983 32150 642 697
Exon 33224 33743 phase 1
Supporting 33226 33741 699 870
Exon 35244 35325 phase 2
Supporting 35245 35325 872 898
Exon 36272 36370 phase 0
Supporting 36272 36370 899 931
Exon 36568 36648 phase 0
Supporting 36568 36648 932 958
Exon 36955 37062 phase 0
Supporting 36955 37062 959 994
//
|
