File: testaln.nexus

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#NEXUS
[TITLE: Four Anthropoidea]

begin data;
dimensions ntax=4 nchar=50;
format interleave datatype=RNA missing=N gap=-;

matrix
'Homo sapiens'      AGUCGAGUC---GCAGAAACGCAUGAC-GAC
Pan_paniscus        AGUCGCGUCG--GCAGAAACGCAUGACGGAC
Gorilla_gorilla     AGUCGCGUCG--GCAGAUACGCAUCACGGAC
Pongo_pigmaeus      AGUCGCGUCGAAGCAGA--CGCAUGACGGAC

'Homo sapiens'      CACAUUUU-CCUUGCAAAG
Pan_paniscus        CACAUCAU-CCUUGCAAAG
Gorilla_gorilla     -ACAUCAUCCCUCGCAGAG
Pongo_pigmaeus      CACAUCAUCCCUUGCAGAG
;

endblock;
begin assumptions;
options deftype=unord;