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# -*-Perl-*- Test Harness script for Bioperl
# $Id$
use strict;
BEGIN {
use Bio::Root::Test;
test_begin(-tests => 12,
-requires_modules => [qw(IO::String
LWP::UserAgent
HTTP::Request::Common)],
-requires_networking => 1);
}
my $verbose = test_debug();
sub fetch {
my ($id, $class) = @_;
print "###################### $class ####################################\n" if $verbose;
my $seq;
ok defined( my $gb = $class->new('-verbose' => $verbose,
'-delay' => 0,
'-retrievaltype' => 'tempfile') ), "defined for $class";
if ($class eq 'Bio::DB::SwissProt') {
test_skip(-tests => 1, -requires_module => 'Data::Stag');
next if $@;
}
eval { $seq = $gb->get_Seq_by_id($id) };
if ($@ || !defined $seq) {
ok 1, "error or undef for $class";
return;
}
ok 0, "failure for $class";
}
my @classes = qw( Bio::DB::BioFetch Bio::DB::GenBank Bio::DB::GenPept
Bio::DB::SwissProt Bio::DB::RefSeq Bio::DB::EMBL );
my $id = 'XXX111'; # nonsense id
## This is really stupid since many of this modules are not longer
## part of this distribution. However, they are split over many
## distributions and we don't want to have this test code duplicated
## all over the place. We should instead have this a Bio::Test module
## but that's work. See bioperl-live issue #290
for my $class (@classes) {
SKIP: {
eval "require $class";
skip "failed to use $class (guessing it's not available)", 2 if $@;
fetch($id, $class);
}
}
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