File: ECnumber.t

package info (click to toggle)
bioperl 1.7.8-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, sid, trixie
  • size: 35,788 kB
  • sloc: perl: 94,019; xml: 14,811; makefile: 20
file content (86 lines) | stat: -rw-r--r-- 1,575 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
# -*-Perl-*- Test Harness script for Bioperl
# $Id$

use strict;

BEGIN {
	use Bio::Root::Test;
	
	test_begin(-tests => 27);
	
    use_ok('Bio::Tools::ECnumber');
}



my $EC1 = Bio::Tools::ECnumber->new( -ec_string => " EC  01. 02.03.00022  ",
                                     -comment   => "is 1.2.3.22" );


my $EC2 = Bio::Tools::ECnumber->new( -ec_string => "ec:1.2.3.-",
                                     -comment   => "is 1.2.3.-" );


my $EC3 = $EC1->copy();

isa_ok( $EC1,"Bio::Tools::ECnumber" );

isa_ok( $EC3,"Bio::Tools::ECnumber");

is( $EC1->EC_string(), "1.2.3.22" );

is( $EC1->EC_string(), "1.2.3.22" );

is( $EC1->to_string(), "1.2.3.22" );

is( $EC1->comment(),   "is 1.2.3.22" );

is( $EC1->enzyme_class(), "1" );

is( $EC1->sub_class(), "2" );

is( $EC1->sub_sub_class(), "3" );

is( $EC1->serial_number(), "22" );

ok( $EC3->is_equal( $EC1 ) );

ok( $EC3->is_equal( "1.2.3.22" ) );

ok( ! $EC3->is_equal( "1.2.3.-" ) );

ok( ! $EC3->is_equal( "1.2.3.23" ) );

ok( $EC1->is_member( $EC2 ) );

ok( $EC1->is_member( "1.2.3.-" ) );

$EC1->init();

ok( $EC2->is_member( $EC1 ) );

is( $EC1->to_string(), "-.-.-.-" );

$EC1->enzyme_class( 44 );

$EC1->sub_class( "033" );

$EC1->sub_sub_class( 22 );

$EC1->serial_number( "-" );

is( $EC1->to_string(), "44.33.22.-" );

ok( ! $EC1->is_member( "44.33.23.-" ) );

ok( ! $EC1->is_member( "44.33.22.1" ) );

ok( $EC1->is_member( "-.-.-.-" ) );

ok( $EC1->is_member( "44.-.-.-" ) );

ok( $EC1->is_member( "44.33.-.-" ) );

ok( $EC1->is_member( "EC 44.33.22.-" ) );

ok( ! $EC1->is_member( "45.33.22.-" ) );