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|
BLASTN 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
RID: 1012577175-3730-28291
Query=
(60 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,083,200 sequences; 4,677,375,331 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY052359.1| Arabidopsis thaliana At2g17400 mRNA, complete cds 96 3e-18
gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II sectio... 96 3e-18
gb|AF132318.1|AF132318 Buchnera aphidicola phosphoribosyl anthra... 42 0.040
gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete se... 36 2.5
gb|AC017078.8| Homo sapiens BAC clone RP11-457N9 from 2, complet... 36 2.5
gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22... 36 2.5
gb|AC006017.2|AC006017 Homo sapiens PAC clone RP5-981O7 from 7q3... 36 2.5
dbj|AP001519.1|AP001519 Bacillus halodurans genomic DNA, section... 36 2.5
gb|AC095064.3| Homo sapiens chromosome 4 clone RP11-620C21, comp... 34 9.7
gb|AC003029.3| Homo sapiens Chromosome 12q24 PAC RP3-462E2 (Rosw... 34 9.7
gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complet... 34 9.7
gb|AC093865.2| Homo sapiens chromosome 2 clone RP11-560C24, comp... 34 9.7
gb|AC010202.6|AC010202 Homo sapiens 12q BAC RP11-210L7 (Roswell ... 34 9.7
gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana... 34 9.7
emb|AL355520.8|AL355520 Human DNA sequence from clone RP4-595C2 ... 34 9.7
emb|AL137879.15|AL137879 Human DNA sequence from clone RP11-153O... 34 9.7
gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq2... 34 9.7
gb|AE000650.1|AE000650 Helicobacter pylori 26695 section 128 of ... 34 9.7
gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete... 34 9.7
gb|AC006266.1|AC006266 Arabidopsis thaliana BAC F1K3 from chromo... 34 9.7
gb|U32797.1|U32797 Haemophilus influenzae Rd section 112 of 163 ... 34 9.7
emb|AJ286341.1|HIM286341 Human immunodeficiency virus type 1 pro... 34 9.7
emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, ... 34 9.7
emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, ... 34 9.7
emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, B... 34 9.7
emb|AJ132676.1|MMU132676 Mus musculus IgVk gh33r pseudogene 34 9.7
emb|AJ132673.1|MMU132673 Mus musculus IgVk gd33r pseudogene 34 9.7
emb|AJ132672.1|MMU132672 Mus musculus IgVk gc33r pseudogene 34 9.7
emb|Z74955.1|SCYOR047C S.cerevisiae chromosome XV reading frame ... 34 9.7
emb|Z74954.1|SCYOR046C S.cerevisiae chromosome XV reading frame ... 34 9.7
gb|U28135.1|SCU28135 Saccharomyces cerevisiae DEAD-Box Protein 5... 34 9.7
ALIGNMENTS
>gb|AY052359.1| Arabidopsis thaliana At2g17400 mRNA, complete cds
Length = 2826
Score = 95.6 bits (48), Expect = 3e-18
Identities = 58/60 (96%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 aggaatgctgtttaattggaatcgtacaatggagaatttgacggaaatagaatcaacgat 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 154 aggaatgctgtttaattggaatca-acaatggagaatttgacggaaatagaatcaacgat 212
>gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II section 100 of 255 of the complete
sequence. Sequence from clones T23A1, F5J6, MJB20
Length = 76170
Score = 95.6 bits (48), Expect = 3e-18
Identities = 58/60 (96%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 aggaatgctgtttaattggaatcgtacaatggagaatttgacggaaatagaatcaacgat 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 60659 aggaatgctgtttaattggaatca-acaatggagaatttgacggaaatagaatcaacgat 60717
>gb|AF132318.1|AF132318 Buchnera aphidicola phosphoribosyl anthranilate transferase (trpD),
phosphoribosyl anthranilate isomerase/indoleglycerol
phosphate synthetase fusion (trpC/F), beta subunit of
tryptophan synthetase (trpB), and alpha subunit of
tryptophan synthetase (trp>
Length = 5383
Score = 42.1 bits (21), Expect = 0.040
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 35 aatttgacggaaatagaatca 55
|||||||||||||||||||||
Sbjct: 536 aatttgacggaaatagaatca 556
>gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete sequence
Length = 194322
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 34 gaatttgacggaaataga 51
||||||||||||||||||
Sbjct: 193876 gaatttgacggaaataga 193859
>gb|AC017078.8| Homo sapiens BAC clone RP11-457N9 from 2, complete sequence
Length = 193979
Score = 36.2 bits (18), Expect = 2.5
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 3 gaatgctgtttaattggaatcgtaca 28
||||| ||||||| ||||||||||||
Sbjct: 142900 gaatgttgtttaaatggaatcgtaca 142925
>gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22, complete sequence
Length = 219436
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13 taattggaatcgtacaat 30
||||||||||||||||||
Sbjct: 46649 taattggaatcgtacaat 46666
>gb|AC006017.2|AC006017 Homo sapiens PAC clone RP5-981O7 from 7q34-q36, complete sequence
Length = 162556
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13 taattggaatcgtacaat 30
||||||||||||||||||
Sbjct: 114940 taattggaatcgtacaat 114923
>dbj|AP001519.1|AP001519 Bacillus halodurans genomic DNA, section 13/14
Length = 303650
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 30 tggagaatttgacggaaa 47
||||||||||||||||||
Sbjct: 28875 tggagaatttgacggaaa 28858
>gb|AC095064.3| Homo sapiens chromosome 4 clone RP11-620C21, complete sequence
Length = 87943
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12 ttaattggaatcgtaca 28
|||||||||||||||||
Sbjct: 42346 ttaattggaatcgtaca 42362
>gb|AC003029.3| Homo sapiens Chromosome 12q24 PAC RP3-462E2 (Roswell Park Cancer
Institute Human PAC library) complete sequence
Length = 137830
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24 gtacaatggagaatttg 40
|||||||||||||||||
Sbjct: 71491 gtacaatggagaatttg 71507
>gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complete sequence
Length = 128535
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6 tgctgtttaattggaat 22
|||||||||||||||||
Sbjct: 111999 tgctgtttaattggaat 111983
>gb|AC093865.2| Homo sapiens chromosome 2 clone RP11-560C24, complete sequence
Length = 186218
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5 atgctgtttaattggaa 21
|||||||||||||||||
Sbjct: 113514 atgctgtttaattggaa 113530
>gb|AC010202.6|AC010202 Homo sapiens 12q BAC RP11-210L7 (Roswell Park Cancer Institute Human
BAC Library) complete sequence
Length = 170004
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4 aatgctgtttaattgga 20
|||||||||||||||||
Sbjct: 95294 aatgctgtttaattgga 95310
>gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana BAC F6N18 from chromosome I,
complete sequence
Length = 92219
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14 aattggaatcgtacaat 30
|||||||||||||||||
Sbjct: 84400 aattggaatcgtacaat 84416
>emb|AL355520.8|AL355520 Human DNA sequence from clone RP4-595C2 on chromosome 1q24.1-25.3
Contains ESTs, STSs and GSSs. Contains the 3' part of the
gene for two isoforms of the KIAA0351 protein and the gene
for angiopoietin Y1, complete sequence [Homo sapiens]
Length = 157575
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5 atgctgtttaattggaa 21
|||||||||||||||||
Sbjct: 80465 atgctgtttaattggaa 80481
>emb|AL137879.15|AL137879 Human DNA sequence from clone RP11-153O23 on chromosome 13, complete
sequence [Homo sapiens]
Length = 85149
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 25 tacaatggagaatttga 41
|||||||||||||||||
Sbjct: 41783 tacaatggagaatttga 41799
>gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq23, complete sequence
Length = 72291
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1 aggaatgctgtttaatt 17
|||||||||||||||||
Sbjct: 40047 aggaatgctgtttaatt 40063
>gb|AE000650.1|AE000650 Helicobacter pylori 26695 section 128 of 134 of the complete genome
Length = 11043
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 36 atttgacggaaatagaa 52
|||||||||||||||||
Sbjct: 1772 atttgacggaaatagaa 1756
>gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete sequence
Length = 165633
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4 aatgctgtttaattgga 20
|||||||||||||||||
Sbjct: 11360 aatgctgtttaattgga 11344
>gb|AC006266.1|AC006266 Arabidopsis thaliana BAC F1K3 from chromosome IV near 21 cM, complete
sequence
Length = 105680
Score = 34.2 bits (17), Expect = 9.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 20 aatcgtacaatggagaatttg 40
||||||||||||||| |||||
Sbjct: 52077 aatcgtacaatggagtatttg 52057
>gb|U32797.1|U32797 Haemophilus influenzae Rd section 112 of 163 of the complete genome
Length = 10274
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 26 acaatggagaatttgac 42
|||||||||||||||||
Sbjct: 2447 acaatggagaatttgac 2431
>emb|AJ286341.1|HIM286341 Human immunodeficiency virus type 1 proviral env gene for gp160,
genomic RNA, isolate M2424/4, clone 1
Length = 2586
Score = 34.2 bits (17), Expect = 9.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 7 gctgtttaattggaatcgtac 27
|||||||||||||||| ||||
Sbjct: 1176 gctgtttaattggaatagtac 1196
>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61
Length = 198402
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 44 gaaatagaatcaacgat 60
|||||||||||||||||
Sbjct: 146009 gaaatagaatcaacgat 146025
>emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 20
Length = 196517
Score = 34.2 bits (17), Expect = 9.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 20 aatcgtacaatggagaatttg 40
||||||||||||||| |||||
Sbjct: 180658 aatcgtacaatggagtatttg 180638
>emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, BAC clone F22K18 (ESSAII project)
Length = 125803
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 44 gaaatagaatcaacgat 60
|||||||||||||||||
Sbjct: 102901 gaaatagaatcaacgat 102885
>emb|AJ132676.1|MMU132676 Mus musculus IgVk gh33r pseudogene
Length = 737
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13 taattggaatcgtacaa 29
|||||||||||||||||
Sbjct: 317 taattggaatcgtacaa 301
>emb|AJ132673.1|MMU132673 Mus musculus IgVk gd33r pseudogene
Length = 813
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13 taattggaatcgtacaa 29
|||||||||||||||||
Sbjct: 318 taattggaatcgtacaa 302
>emb|AJ132672.1|MMU132672 Mus musculus IgVk gc33r pseudogene
Length = 736
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13 taattggaatcgtacaa 29
|||||||||||||||||
Sbjct: 318 taattggaatcgtacaa 302
>emb|Z74955.1|SCYOR047C S.cerevisiae chromosome XV reading frame ORF YOR047c
Length = 3461
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24 gtacaatggagaatttg 40
|||||||||||||||||
Sbjct: 473 gtacaatggagaatttg 489
>emb|Z74954.1|SCYOR046C S.cerevisiae chromosome XV reading frame ORF YOR046c
Length = 2310
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24 gtacaatggagaatttg 40
|||||||||||||||||
Sbjct: 1605 gtacaatggagaatttg 1621
>gb|U28135.1|SCU28135 Saccharomyces cerevisiae DEAD-Box Protein 5 (DBP5) gene, complete cds
Length = 3696
Score = 34.2 bits (17), Expect = 9.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24 gtacaatggagaatttg 40
|||||||||||||||||
Sbjct: 1212 gtacaatggagaatttg 1196
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Jan 31, 2002 11:56 PM
Number of letters in database: 382,408,035
Number of sequences in database: 1,083,200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 117,267
Number of Sequences: 1083200
Number of extensions: 117267
Number of successful extensions: 7699
Number of sequences better than 10.0: 31
length of query: 60
length of database: 4,677,375,331
effective HSP length: 19
effective length of query: 41
effective length of database: 4,656,794,531
effective search space: 190928575771
effective search space used: 190928575771
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)
|
