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|
TBLASTN 2.0.4 [Feb-24-1998]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A.
Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman
(1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
gi|1401126
(504 letters)
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
336,723 sequences; 677,679,054 total letters
Searchingdone
Score E
Sequences producing significant alignments: (bits) Value
gb|U49928|HSU49928 Homo sapiens TAK1 binding protein (TAB1) mRNA... 1009 0.0
emb|Z36985|PTPP2CMR P.tetraurelia mRNA for protein phosphatase t... 58 4e-07
emb|X77116|ATMRABI1 A.thaliana mRNA for ABI1 protein 53 1e-05
gb|U12856|ATU12856 Arabidopsis thaliana Col-0 abscisic acid inse... 53 1e-05
dbj|D38109|ATHPP2CA Arabidopsis thaliana mRNA for protein phosph... 52 3e-05
emb|Y08965|ATABI2RNA A.thaliana mRNA for ABI2 protein 47 8e-04
emb|AL010222|PFSC04009 Plasmodium falciparum DNA *** SEQUENCING ... 45 0.004
gb|AC002409|ATAC002409 Arabidopsis thaliana chromosome II BAC T2... 43 0.012
emb|Z98762|SPAC4A8 S.pombe chromosome I cosmid c4A8 42 0.020
gb|AF006827|AF006827 Magnaporthe grisea adenylate cyclase (MAC1)... 41 0.045
emb|Y13936|HSY13936 Homo sapiens mRNA for protein phosphatase 2C... 41 0.059
gb|U81159|BTU81159 Bos taurus magnesium-dependent calcium inhibi... 40 0.077
emb|Y10438|SPFKBAD Streptomyces sp. MA6548 fkbA gene and partial... 40 0.077
gb|AF012921|AF012921 Magnaporthe grisea adenylate cyclase (mac1)... 40 0.10
gb|U42383|MMU42383 Mus musculus fibroblast growth factor inducib... 40 0.10
gb|AF023665|AF023665 Plasmodium falciparum protein phosphatase 2... 39 0.13
gb|M24942|YSPCYR1A Yeast (S.pombe) adenylate cyclase (CYR1) gene... 39 0.17
gb|M26699|YSPADC Yeast (S.pombe) cyr1 gene encoding adenylyl cyc... 39 0.17
gb|L43413|PANADCY Podospora anserina adenyl cyclase gene, exons 1-4 38 0.30
gb|M89651|HUMMMDBC Human DNA from cosmid DNA MMDB (f10080) and M... 38 0.30
emb|Z99161|SPAC11G7 S.pombe chromosome I cosmid c11G7 38 0.30
emb|X56042|SKADECYC Saccharomyces kluyveri gene for adenylyl cyc... 37 0.88
gb|M29235|CELPOLII C.elegans RNA polymerase II largest subunit (... 36 1.1
dbj|D45132|HUMHOXY1 Human kidney mRNA for zinc-finger DNA-bindin... 36 1.1
gb|U70654|MMU70654 Mus musculus musculus sex determining protein... 36 1.1
gb|U53333|CELF36A4 Caenorhabditis elegans cosmid F36A4. 36 1.1
gb|L29028|CREWP6A Chlamydomonas eugametos WP6 mRNA, complete cds 36 1.1
gb|U70653|MMU70653 Mus musculus musculus sex determining protein... 36 1.1
gb|U17838|HSU17838 Human zinc finger protein RIZ mRNA, complete cds 36 1.1
emb|X56432|DMRUNTR D.melanogaster mRNA for runt segmentation gene 36 1.5
emb|X67204|MMSRYLOC M.musculus DNA sequence of Sry locus 36 1.5
gb|U00051|CELF42G9 Caenorhabditis elegans cosmid F42G9. 36 1.5
gb|U70655|MMU70655 Mus musculus sex determining protein (Sry) ge... 36 1.5
gb|AF019985|AF019985 Dictyostelium discoideum Spalten (spnA) mRN... 36 2.0
emb|X78886|ATABI1G A.thaliana (Landsberg erecta) ABI1 gene 36 2.0
gb|U70651|MMU70651 Mus musculus musculus sex determining protein... 36 2.0
gb|U70652|MMU70652 Mus musculus musculus sex determining protein... 36 2.0
emb|X58924|HVRPL11E H.volcanii genes for ribosomal proteins L11e... 36 2.0
emb|X05806|CHAMPER Acetabularia plastid DNA homologous to Drosop... 36 2.0
gb|U82833|OSU82833 Oryza sativa S-adenosyl-L-methionine syntheta... 35 2.6
emb|Z27084|HLHOLLI H.lanatus mRNA for allergen Hol-lI 35 2.6
dbj|D00676|SH1RSP40 Pseudorabies virus genome, RSp40 and pk genes 35 2.6
emb|Y10421|CCATCOLE1 C.curvatus strain ATCC 20509 Ole1 gene 35 2.6
gb|L14320|HSBBICP4A Bovine herpesvirus type 1 early-intermediate... 35 2.6
emb|AJ004801|BHV1CGEN Bovine herpesvirus 1 complete genome 35 2.6
dbj|AB010074|AB010074 Arabidopsis thaliana genomic DNA, chromoso... 35 3.4
gb|AC004490|AC004490 Homo sapiens chromosome 19, cosmid R29381, ... 35 3.4
dbj|AB011474|AB011474 Arabidopsis thaliana genomic DNA, chromoso... 35 3.4
gb|U03645|MMU03645 Mus musculus domesticus Torino (Sry) gene, co... 35 3.4
gb|U70641|MMU70641 Mus musculus domesticus sex determining prote... 35 3.4
gb|U70650|MMU70650 Mus musculus domesticus sex determining prote... 35 3.4
gb|U70642|MMU70642 Mus musculus domesticus sex determining prote... 35 3.4
gb|U70647|MMU70647 Mus musculus domesticus sex determining prote... 35 3.4
emb|Y11840|ATABI2 Arabidopsis thaliana ABI2 gene 35 3.4
emb|Y08966|ATABI2DNA A.thaliana gene encoding ABI2 protein 35 3.4
emb|X16144|SVGRA S. violaceoruber DNA for granaticin polyketide ... 35 3.4
emb|X16300|SVPKS Streptomyces violaceoruber polyketide synthase ... 35 3.4
gb|U70657|MMU70657 Mus musculus castaneus sex determining protei... 35 3.4
gb|M57417|HUMMUCCF Human (cystic fibrosis patient) mucin mRNA, p... 35 3.4
gb|L04286|DDIGP100 Dictyostelium discoideum glycoprotein gp100 (... 35 3.4
emb|Z46938|BTTESDNA B.taurus DNA (protamine gene cluster) 35 3.4
gb|L13054|DROZESTEL Drosophila melanogaster zeste (z) gene, part... 34 4.4
gb|L13058|DROZESTEP Drosophila melanogaster zeste (z) gene, part... 34 4.4
gb|M60590|YSCAAGLCS S.cerevisiae a-agglutinin core subunit (AGA1... 34 4.4
gb|AF009521|AF009521 Mus spretus sex determining protein (Sry) g... 34 4.4
emb|Z71659|SCYNR044W S.cerevisiae chromosome XIV reading frame O... 34 4.4
gb|U19361|PMU19361 Petromyzon marinus neurofilament subunit NF-1... 34 4.4
gb|U70646|MMU70646 Mus musculus domesticus sex determining prote... 34 4.4
gb|U23477|DDU23477 Dictyostelium discoideum phosphatidylinositol... 34 4.4
emb|X55695|LEEXTEN15 Tomato mRNA for a glycine-rich protein (clo... 34 4.4
emb|Z95556|MTCY07A7 Mycobacterium tuberculosis cosmid SCY07A7 34 4.4
dbj|AB007645|AB007645 Arabidopsis thaliana genomic DNA, chromoso... 34 5.8
emb|X64346|HSGEND Herpesvirus saimiri complete genome DNA 34 5.8
emb|Z95620|SPBC3D6 S.pombe chromosome II cosmid c3D6 34 5.8
gb|U70644|MMU70644 Mus musculus domesticus sex determining prote... 34 5.8
gb|U70649|MMU70649 Mus musculus domesticus sex determining prote... 34 5.8
gb|U43491|SCU43491 Saccharomyces cerevisiae cosmid clone pEOA156... 34 5.8
dbj|D00909|NEUNAC N.crassa nac gene coding for adenylate cyclase... 34 5.8
gb|U70645|MMU70645 Mus musculus domesticus sex determining prote... 34 5.8
gb|AF009519|AF009519 Mus musculus domesticus sex determining pro... 34 5.8
gb|M77174|MUSPERPA Mouse perlecan mRNA, complete cds. 34 5.8
emb|Z74917|SCYOR009W S.cerevisiae chromosome XV reading frame OR... 34 5.8
gb|J04054|MUSPCGBM Mouse basement membrane proteoglycan mRNA, pa... 34 5.8
emb|Z47072|CEF26C11 Caenorhabditis elegans cosmid F26C11, comple... 34 5.8
gb|U70643|MMU70643 Mus musculus sex determining protein (Sry) ge... 34 5.8
gb|AC003671|AC003671 Arabidopsis thaliana chromosome 1 BAC F17O7... 34 5.8
emb|X16481|RN11ZNBP Rat mRNA for zinc(2+) binding protein 34 5.8
gb|U46156|SSU46156 Synechococcus sp. CcmK (ccmK) gene, complete ... 34 5.8
gb|AC000098|YUP8H12 Arabidopsis thaliana chromosome 1 YAC yUP8H1... 34 5.8
emb|Z71781|SCCIVL37K S.cerevisiae chromosome IV left arm (EU) DN... 34 5.8
emb|Y13332|SSTO1AMY Streptomyces sp. TO1 amy gene 34 5.8
gb|M30473|NEULEURSC N.crassa cytoplasmic leucyl-tRNA synthetase ... 34 5.8
emb|Z74085|SCYDL037C S.cerevisiae chromosome IV reading frame OR... 34 5.8
gb|AF029858|AF029858 Sorghum bicolor cytochrome P450 CYP71E1 (CY... 34 5.8
gb|S47414|S47414 glycine-rich protein {clone atGRP-5} [Arabidops... 34 7.6
emb|X60294|SCSEC1A S.cereale Sec1 gene for omega secalin 34 7.6
emb|Z37975|BTPLAKOPH B.taurus mRNA for plakophilin. 34 7.6
emb|X60295|SCSEC1B S.cereale Sec1 gene for omega secalin 34 7.6
dbj|D87895|D87895 Aspergillus nidulans DNA for chitinase, comple... 34 7.6
gb|AF017789|AF017789 Homo sapiens putative transcription factor ... 34 7.6
>gb|U49928|HSU49928 Homo sapiens TAK1 binding protein (TAB1) mRNA, complete cds.
Length = 3096
Score = 1009 bits (2580), Expect = 0.0
Identities = 504/504 (100%), Positives = 504/504 (100%)
Query: 1 MAAQRRSLLQSEQQPSWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSEN 60
MAAQRRSLLQSEQQPSWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSEN
Sbjct: 21 MAAQRRSLLQSEQQPSWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSEN 200
Query: 61 NCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLES 120
NCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLES
Sbjct: 201 NCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLES 380
Query: 121 IDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYV 180
IDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYV
Sbjct: 381 IDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYV 560
Query: 181 ANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQEST 240
ANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQEST
Sbjct: 561 ANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQEST 740
Query: 241 RRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAH 300
RRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAH
Sbjct: 741 RRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAH 920
Query: 301 GPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTL 360
GPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTL
Sbjct: 921 GPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTL 1100
Query: 361 LVRNFGYPLGEMSQPTPSPAPAAGGRVYPVSVPYSSAQSTSKTSVTLSLVMPSQGQMVNG 420
LVRNFGYPLGEMSQPTPSPAPAAGGRVYPVSVPYSSAQSTSKTSVTLSLVMPSQGQMVNG
Sbjct: 1101LVRNFGYPLGEMSQPTPSPAPAAGGRVYPVSVPYSSAQSTSKTSVTLSLVMPSQGQMVNG 1280
Query: 421 AHSASTLDEATPTLTNQSPTLTLQSTNTHTQSSSSSSDGGLFRSRPAHSLPPGEDGRVEP 480
AHSASTLDEATPTLTNQSPTLTLQSTNTHTQSSSSSSDGGLFRSRPAHSLPPGEDGRVEP
Sbjct: 1281AHSASTLDEATPTLTNQSPTLTLQSTNTHTQSSSSSSDGGLFRSRPAHSLPPGEDGRVEP 1460
Query: 481 YVDFAEFYRLWSVDHGEQSVVTAP 504
YVDFAEFYRLWSVDHGEQSVVTAP
Sbjct: 1461YVDFAEFYRLWSVDHGEQSVVTAP 1532
>emb|Z36985|PTPP2CMR P.tetraurelia mRNA for protein phosphatase type 2C
Length = 969
Score = 57.8 bits (137), Expect = 4e-07
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 2/261 (0%)
Query: 64 LYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDD 123
++GVF+G+ G V FV + ELL + + E+ F E++ +
Sbjct: 182 VFGVFDGHGGREVA*FVEKHFVDELLKNK------------------NFKEQKFEEALKE 307
Query: 124 ALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREIS-GGAMAVVAVLLNNKLYVAN 182
+ L L P+ QK L K + + S G A VA++ N LYVAN
Sbjct: 308 TFLKMDELL-----------LTPEGQKELN*YKATDTDESYAGCTANVALIYKNTLYVAN 454
Query: 183 VGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQESTRR 242
G +R++LC++ + ++VDH +N +E R+ + G G + + +R
Sbjct: 455 AGDSRSVLCRNNTN----HDMSVDHKPDNPEEKSRIERAG---GFVSDGRVNGNLNLSRA 613
Query: 243 IGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGP 302
+GD + K D + IIA P++ + L F+++ +G+++ L
Sbjct: 614 LGDLEYKR-----DNKLRSNE*LIIALPDVKKTE-LTP*DKFILMGCDGVFETLNH*ELL 775
Query: 303 GQANQEIA-AMIDTEFAKQTSLD 324
Q N I A + E K+ + D
Sbjct: 776 KQVNSTIG*AQVTEELLKKAAED 844
>emb|X77116|ATMRABI1 A.thaliana mRNA for ABI1 protein
Length = 1981
Score = 52.7 bits (124), Expect = 1e-05
Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 6/242 (2%)
Query: 55 KFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVE 114
+F ++ +GV++G+ G++V N+ +R+ L AE A + +L +E
Sbjct: 918 RFDPQSAAHFFGVYDGHGGSQVANYCRERMHLAL------AEEI-AKEKPMLCDGDTWLE 1076
Query: 115 RSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLL 174
+ + L + ++S PE V G+ +VVAV+
Sbjct: 1077 KWKKALFNSFLRVDSEIESVAPETV-------------------------GSTSVVAVVF 1181
Query: 175 NNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQ---- 230
+ ++VAN G +RA+LC+ G L+VDH + EDE R+ G GK+ Q
Sbjct: 1182 PSHIFVANCGDSRAVLCR----GKTALPLSVDHKPDREDEAARIEAAG---GKVIQWNGA 1340
Query: 231 --VGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLM 288
G++ +R IGD +K II +PE+ + + L+L
Sbjct: 1341 RVFGVLA---MSRSIGDRYLK--------------PSIIPDPEVTAVKRVK-EDDCLILA 1466
Query: 289 SEGLYKAL 296
S+G++ +
Sbjct: 1467 SDGVWDVM 1490
>gb|U12856|ATU12856 Arabidopsis thaliana Col-0 abscisic acid insensitive protein (ABI1)
mRNA, complete cds.
Length = 2000
Score = 52.7 bits (124), Expect = 1e-05
Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 6/242 (2%)
Query: 55 KFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVE 114
+F ++ +GV++G+ G++V N+ +R+ L AE A + +L +E
Sbjct: 918 RFDPQSAAHFFGVYDGHGGSQVANYCRERMHLAL------AEEI-AKEKPMLCDGDTWLE 1076
Query: 115 RSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLL 174
+ + L + ++S PE V G+ +VVAV+
Sbjct: 1077 KWKKALFNSFLRVDSEIESVAPETV-------------------------GSTSVVAVVF 1181
Query: 175 NNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQ---- 230
+ ++VAN G +RA+LC+ G L+VDH + EDE R+ G GK+ Q
Sbjct: 1182 PSHIFVANCGDSRAVLCR----GKTALPLSVDHKPDREDEAARIEAAG---GKVIQWNGA 1340
Query: 231 --VGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLM 288
G++ +R IGD +K II +PE+ + + L+L
Sbjct: 1341 RVFGVLA---MSRSIGDRYLK--------------PSIIPDPEVTAVKRVK-EDDCLILA 1466
Query: 289 SEGLYKAL 296
S+G++ +
Sbjct: 1467 SDGVWDVM 1490
>dbj|D38109|ATHPP2CA Arabidopsis thaliana mRNA for protein phosphatase 2C
Length = 1371
Score = 51.5 bits (121), Expect = 3e-05
Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 13/290 (4%)
Query: 47 HPPEDSWLKFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVL 106
HP S+L+ SEN+ F YGVF+G+ + V +RL +++ ++ A + +
Sbjct: 447 HP---SFLQRNSENHHF-YGVFDGHGCSHVAEKCRERLH-DIVKKEVEVM-ASDEWTETM 608
Query: 107 LQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGA 166
+++F +++ + + + A+ + PQ + G+
Sbjct: 609 VKSFQKMDKEVSQRECNLVVNGAT--RSMKNSCRCELQSPQCDAV-------------GS 743
Query: 167 MAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAG 226
AVV+V+ K+ V+N G +RA+LC++ V L+VDH + DEL R+ Q G G
Sbjct: 744 TAVVSVVTPEKIIVSNCGDSRAVLCRNGV----AIPLSVDHKPDRPDELIRIQQAG---G 902
Query: 227 KI------KQVGIICGQESTRRIGD-YKVKYGYTDIDLLSAAKSKP----IIAEPEIHGA 275
++ + +G++ +R IGD Y Y D ++ ++ I+A +
Sbjct: 903 RVIYWDGARVLGVLA---MSRAIGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDV 1073
Query: 276 QPLDGVTGF--LVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDR 333
P + G + L G +AAH A + A ++ + S D V+ VVD
Sbjct: 1074VPNETACGVARMCLRGAGAGDDSDAAH---NACSDAALLLTKLALARQSSDNVSVVVVDL 1244
Query: 334 VKR 336
KR
Sbjct: 1245RKR 1253
>emb|Y08965|ATABI2RNA A.thaliana mRNA for ABI2 protein
Length = 1470
Score = 46.9 bits (109), Expect = 8e-04
Identities = 55/241 (22%), Positives = 100/241 (40%), Gaps = 7/241 (2%)
Query: 56 FRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELL--LGQLNAEHAEADV-----RRVLLQ 108
F + +GV++G+ G++V N+ +R+ L + + E + D ++ L
Sbjct: 504 FNPHLSAHFFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFN 683
Query: 109 AFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMA 168
+F V+ S +E++ A PE V G+ +
Sbjct: 684 SFMRVD-SEIETVAHA-----------PETV-------------------------GSTS 752
Query: 169 VVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKI 228
VVAV+ ++VAN G +RA+LC+ G L+VDH + +DE R+ G +
Sbjct: 753 VVAVVFPTHIFVANCGDSRAVLCR----GKTPLALSVDHKPDRDDEAARIEAAGGKVIRW 920
Query: 229 KQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLM 288
+ +R IGD +K +I +PE+ + + L+L
Sbjct: 921 NGARVFGVLAMSRSIGDRYLK--------------PSVIPDPEVTSVRRVK-EDDCLILA 1055
Query: 289 SEGLYKAL 296
S+GL+ +
Sbjct: 1056SDGLWDVM 1079
>emb|AL010222|PFSC04009 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from contig
4-9, complete sequence [Plasmodium falciparum]
Length = 5332
Score = 44.5 bits (103), Expect = 0.004
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 15/183 (8%)
Query: 163 SGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTE-NEDELFRLSQL 221
S G A V+V+ N LYVAN+G +R ++ K+ + L VDH N+ E R+ +
Sbjct: 2760 SSGTTACVSVIFKNMLYVANIGDSRCIISKNG----RAIVLTVDHRASINKKEQDRILKS 2593
Query: 222 GLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGV 281
G G + G + G R G+ + K K +I EP++ + D
Sbjct: 2592 G---GILDDEGYLGGCLGVCR--------GFGSFHKKTKEKLKGLICEPDLFHIKLTDD- 2449
Query: 282 TGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFA---------KQTSLDAVAQAVV- 331
FL++ +G++ + + + D + A K+ SLD ++ VV
Sbjct: 2448 DEFLIICCDGIFDVITSQEAVNTVKNSLIQSRDAKTAAEALCQLAYKKKSLDNLSVLVVI 2269
Query: 332 ----DRVKRIHSDTFASG 345
D+ ++ S +SG
Sbjct: 2268 FQNPDKNNKVSSINESSG 2215
>gb|AC002409|ATAC002409 Arabidopsis thaliana chromosome II BAC T20B5 genomic sequence, complete
sequence [Arabidopsis thaliana]
Length = 72839
Score = 43.0 bits (99), Expect = 0.012
Identities = 21/57 (36%), Positives = 38/57 (65%)
Query: 165 GAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQL 221
G A+ ++L+ NKL+VANVG +RA+LC++ ++++ D+ TE+E L+ + L
Sbjct: 24355 GCTAIASLLVENKLFVANVGDSRAILCRAG-HPFALSKVR*DYHTESELSLYSIGAL 24188
>emb|Z98762|SPAC4A8 S.pombe chromosome I cosmid c4A8
Length = 43895
Score = 42.2 bits (97), Expect = 0.020
Identities = 56/230 (24%), Positives = 104/230 (44%), Gaps = 20/230 (8%)
Query: 63 FLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESID 122
F YG+F+G+ G + F++ L + LN D ++L + V ++ +
Sbjct: 3939 FFYGLFDGHGGTECSEFLSTNLGKIIENQDLN------DTEKILKEVHSV--GGYMAGLK 3784
Query: 123 DALAEKASLQSQLPEGVPQHQLPPQY-QKILERLKTLER----EISGGAMAVVAVLLNNK 177
+ + LQS+ + + + +L + Q ++ L R GA+ VA++ +
Sbjct: 3783 PPFSLRTVLQSRDEDLLWRARLYYSFLQADMDYLTNYARPSPDSAVPGAVGTVAIITSKN 3604
Query: 178 -----------LYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGL--- 223
+++A+VG RALLC S + +L H + +E RL + +
Sbjct: 3603 NLSYWESDSYIIHLAHVGDTRALLCDSRTG--RAHRLTFQHHPADVEEARRLRRYNMGFS 3430
Query: 224 -DAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVT 282
D+ K+ + +TR GD GY K ++AEP++ L
Sbjct: 3429 RDSFGQKRFAWVA---NTRSFGD-----GY-------KLKKLGVVAEPQLTSIHSLRDDW 3295
Query: 283 GFLVLMSEGL 292
FL L+S+G+
Sbjct: 3294 SFLTLLSDGI 3265
>gb|AF006827|AF006827 Magnaporthe grisea adenylate cyclase (MAC1) gene, complete cds
Length = 8678
Score = 41.0 bits (94), Expect = 0.045
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 8/259 (3%)
Query: 14 QPSWTDDLPLCHLSGVGSASNR-SYS-ADGKGTESHPPEDSWL--KFRSENNCFLYGVFN 69
QPS + C + GS++ Y+ AD G H + +F + L G+F+
Sbjct: 5314 QPSIPEQSEDCRVRTSGSSAGYLPYAMADTLGKNEHLSTVDLVVPRFNASETETLLGLFD 5493
Query: 70 GY----DGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDAL 125
G G+++ ++ + GQ+ A A + D + R+FL +++ L
Sbjct: 5494 GQALSSGGSKIAKYLHENF------GQILATELRALKTGLKETPEDALRRAFL-ALNKEL 5652
Query: 126 AEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGT 185
A S+ VP H+ Q IL + +++ G +A V L LYVANVG
Sbjct: 5653 VTIAIQHSEDRPSVP-HRSGSQAHVILNK-----EDLNSGGVATVVYLQGQDLYVANVGD 5814
Query: 186 NRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQESTRRIGD 245
+A++ +S +T+ H E R+ + G G + + G + Q R
Sbjct: 5815 AQAMIIQSDQTHKMLTR---KHDPAEPTERSRIREAG---GWVSRNGKLNDQLGVSR--- 5967
Query: 246 YKVKYGYTDIDLLSAAKSKPIIAEPEI 272
+GY +DL+ A ++ P ++ I
Sbjct: 5968 ---AFGY--VDLMPAVQAAPHVSHVAI 6033
CPU time: 78.72 user secs. 0.85 sys. secs 79.57 total secs.
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
Posted date: Apr 16, 1998 9:38 AM
Number of letters in database: 677,679,054
Number of sequences in database: 336,723
Lambda K H
0.313 0.130 0.370
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374080624
Number of Sequences: 336723
Number of extensions: 5779396
Number of successful extensions: 37522
Number of sequences better than 10: 214
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 35679
Number of HSP's gapped (non-prelim): 445
length of query: 504
length of database: 225893018
effective HSP length: 62
effective length of query: 442
effective length of database: 205016192
effective search space: 90617156864
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 74 (33.2 bits)
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