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BLASTP 2.2.15 [Oct-15-2006]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman
(1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference: Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics
and other refinements", Nucleic Acids Res. 29:2994-3005.
RID: 1169055516-21385-22799250964.BLASTQ4
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
4,460,989 sequences; 1,533,424,333 total letters
Query= gi|15608519|ref|NP_215895.1| pyrimidine regulatory protein PyrR [Mycobacterium
tuberculosis H37Rv]
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608519|ref|NP_215895.1| pyrimidine regulatory protein Py... 332 8e-90
gi|55670580|pdb|1W30|A Chain A, Pyrr Of Mycobacterium Tubercu... 331 1e-89
gi|41407212|ref|NP_960048.1| pyrimidine regulatory protein Py... 286 5e-76
gi|118464931|ref|YP_882576.1| PyrR bifunctional protein [Myco... 285 1e-75
gi|118617395|ref|YP_905727.1| pyrimidine operon regulatory pr... 273 2e-72
gi|118473305|ref|YP_887358.1| PyrR bifunctional protein [Myco... 258 1e-67
gi|89341207|ref|ZP_01193452.1| Phosphoribosyltransferase [Myc... 254 1e-66
gi|120403643|ref|YP_953472.1| Uracil phosphoribosyltransferas... 254 2e-66
gi|92907430|ref|ZP_01276210.1| Uracil phosphoribosyltransfera... 244 2e-63
gi|111024097|ref|YP_707069.1| probable uracil phosphoribosylt... 238 8e-62
Query= gi|15595598|ref|NP_249092.1| dihydroorotase [Pseudomonas aeruginosa PAO1]
Length=423
Score E
Sequences producing significant alignments: (Bits) Value
gi|15595598|ref|NP_249092.1| dihydroorotase [Pseudomonas aeru... 775 0.0
gi|84324488|ref|ZP_00972546.1| COG0044: Dihydroorotase and re... 771 0.0
gi|116054132|ref|YP_788575.1| noncatalytic dihydroorotase-lik... 770 0.0
gi|309886|gb|AAA25977.1| dihydroorotase-like 768 0.0
gi|94415759|ref|ZP_01295595.1| hypothetical protein PaerP_010... 744 0.0
gi|26991676|ref|NP_747101.1| dihydroorotase [Pseudomonas puti... 628 4e-179
gi|82736201|ref|ZP_00899061.1| Dihydroorotase multifunctional... 627 7e-179
gi|77461536|ref|YP_351043.1| dihydroorotase [Pseudomonas fluo... 624 7e-178
gi|66043748|ref|YP_233589.1| dihydroorotase [Pseudomonas syri... 622 4e-177
gi|118056991|ref|ZP_01525457.1| dihydroorotase, multifunction... 621 5e-177
Query= gi|15595600|ref|NP_249094.1| pyrimidine regulatory protein PyrR [Pseudomonas
aeruginosa PAO1]
Length=170
Score E
Sequences producing significant alignments: (Bits) Value
gi|15595600|ref|NP_249094.1| pyrimidine regulatory protein Py... 320 2e-86
gi|49081516|gb|AAT50158.1| PA0403 [synthetic construct] 317 2e-85
gi|94415757|ref|ZP_01295593.1| hypothetical protein PaerP_010... 310 3e-83
gi|119856461|ref|ZP_01637894.1| Uracil phosphoribosyltransfer... 262 8e-69
gi|67154890|ref|ZP_00416635.1| Uracil phosphoribosyltransfera... 261 2e-68
gi|26991674|ref|NP_747099.1| pyrimidine regulatory protein Py... 260 3e-68
gi|28872153|ref|NP_794772.1| pyrimidine regulatory protein Py... 258 9e-68
gi|104783978|ref|YP_610476.1| transcriptional regulator PyrR ... 256 3e-67
gi|71736513|ref|YP_272777.1| pyrimidine operon regulatory pro... 256 5e-67
gi|70733117|ref|YP_262890.1| pyrimidine regulatory protein Py... 256 5e-67
Query= gi|15598723|ref|NP_252217.1| dihydroorotase [Pseudomonas aeruginosa PAO1]
Length=348
Score E
Sequences producing significant alignments: (Bits) Value
gi|15598723|ref|NP_252217.1| dihydroorotase [Pseudomonas aeru... 690 0.0
gi|84319753|ref|ZP_00968143.1| COG0418: Dihydroorotase [Pseud... 687 0.0
gi|116051526|ref|YP_789638.1| dihydroorotase, homodimeric typ... 686 0.0
gi|94415333|ref|ZP_01295177.1| hypothetical protein PaerP_010... 677 0.0
gi|104780416|ref|YP_606914.1| dihydroorotase [Pseudomonas ent... 618 5e-176
gi|77460740|ref|YP_350247.1| dihydroorotase [Pseudomonas fluo... 617 1e-175
gi|26987822|ref|NP_743247.1| dihydroorotase [Pseudomonas puti... 616 2e-175
gi|70732180|ref|YP_261936.1| dihydroorotase [Pseudomonas fluo... 614 8e-175
gi|118058820|ref|ZP_01527280.1| dihydroorotase, homodimeric t... 613 1e-174
gi|82737454|ref|ZP_00900303.1| Dihydroorotase homodimeric typ... 613 2e-174
Query= gi|15600734|ref|NP_254228.1| dihydroorotase [Pseudomonas aeruginosa PAO1]
Length=445
Score E
Sequences producing significant alignments: (Bits) Value
gi|15600734|ref|NP_254228.1| dihydroorotase [Pseudomonas aeru... 871 0.0
gi|116053692|ref|YP_794019.1| dihydroorotase [Pseudomonas aer... 870 0.0
gi|84318214|ref|ZP_00966642.1| COG0044: Dihydroorotase and re... 869 0.0
gi|94417254|ref|ZP_01297073.1| hypothetical protein PaerP_010... 831 0.0
gi|77461883|ref|YP_351390.1| dihydroorotase [Pseudomonas fluo... 658 0.0
gi|104782179|ref|YP_608677.1| dihydroorotase [Pseudomonas ent... 634 0.0
gi|70733466|ref|YP_263241.1| dihydroorotase [Pseudomonas fluo... 622 2e-177
gi|118059665|ref|ZP_01528121.1| amidohydrolase [Pseudomonas m... 606 2e-172
gi|50084596|ref|YP_046106.1| dihydroorotase [Acinetobacter sp... 562 3e-159
gi|117621557|ref|YP_857112.1| dihydroorotase [Aeromonas hydro... 482 3e-135
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding
environmental samples
Posted date: Jan 16, 2007 5:53 PM
Number of letters in database: 1,533,424,333
Number of sequences in database: 4,460,989
Lambda K H
0.319 0.139 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4460989
Number of Hits to DB: 469576580
Number of extensions: 20639621
Number of successful extensions: 52293
Number of sequences better than 10: 358
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 52059
Number of HSP's successfully gapped: 644
Length of database: 1533424333
T: 11
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
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