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|
BLASTN 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= contig_200
(5116 letters)
Database: /data/blast/yeast.nt
17 sequences; 12,155,026 total letters
Searching.done
Score E
Sequences producing significant alignments: (bits) Value
gi|6323989|ref|NC_001146.1| Saccharomyces cerevisiae chromosome ... 648.7 0.0
>gi|6323989|ref|NC_001146.1| Saccharomyces cerevisiae chromosome XIV,
complete chromosome sequence
Length = 784328
Score = 648.7 bits (327), Expect = 0.0
Identities = 830/1000 (83%)
Strand = Plus / Minus
Query: 2697 ataggccaaaatcttcacatgattcaaaatttcaagaaaatgccccaatatttctcccat 2756
||||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct: 133942 atagggcaaaatcttcatatgattcaaaacttcaaaaaaatgccccagtatttctctcat 133883
Query: 2757 ctaacccttgaaagtcacttgaaaatcattcaagcttggttatttgctgtggaacaaaca 2816
||||| | |||||||| |||||||| |||||||| ||||||||||| || ||||||||
Sbjct: 133882 ttaaccttggaaagtcatttgaaaattattcaagcctggttatttgccgttgaacaaact 133823
Query: 2817 ctagatggaagaggcaaaatgggttccttggtaggggcctctgatgaatttaaaaacggt 2876
||||||||||||| |||||||||||||| ||||| || || |||||||||||||| |||
Sbjct: 133822 ttagatggaagaggaaaaatgggttccttagtaggcgcgtcggatgaatttaaaaatggt 133763
Query: 2877 ggaggtgaaaatgccattttagaatattgtcaatggaccatggtctttatcaatcacttg 2936
|| ||||||||||| ||| ||||||| || |||||||| ||||| ||||||||||| ||
Sbjct: 133762 gggggtgaaaatgcgattctagaatactgccaatggacaatggtttttatcaatcattta 133703
Query: 2937 tgttcttgttctgataatgttaatcaaagaatgcttttgagaacaaagctagaaaattgt 2996
|| ||||| |||||||| | |||||||||||||| || || || || ||||||||||||
Sbjct: 133702 tgctcttgctctgataacataaatcaaagaatgctattaaggacgaaactagaaaattgt 133643
Query: 2997 ggtattctacgaatcatgaataaaataaaattgctagattatgacaaagtgattgatcaa 3056
|| ||| ||||||| ||||| ||||||||| |||||||||| ||||| || ||||| |||
Sbjct: 133642 ggaattttacgaattatgaacaaaataaaactgctagattacgacaaggtaattgaccaa 133583
Query: 3057 attgaattatatgacaataataaactcgatgactttaacgtaaagttggaggcaagtaac 3116
||||| |||||||||||||||||||| || || |||||||| || || ||||| | ||
Sbjct: 133582 attgagttatatgacaataataaacttgacgattttaacgttaaattagaggccaacaat 133523
Query: 3117 aaagcatttaatgtggatttaaaagatccactatcgttgttgaagaatctttgggaaata 3176
|| || |||||||| |||||| | ||||||||||| || || || || |||||||| |||
Sbjct: 133522 aaggcttttaatgtagatttacacgatccactatcattattaaaaaacctttgggatata 133463
Query: 3177 tgtaaaggcacggataatgagaaactgttggtgtctttagtacaacatcttttcctttcc 3236
|||||||| || || ||||| || || || || |||||||| |||||||||||||||||
Sbjct: 133462 tgtaaaggtaccgagaatgaaaagcttttagtatctttagttcaacatcttttcctttct 133403
Query: 3237 agctcgaaattaatcgaagagaatcagaatccctccaaactatccaaacagttgaaatta 3296
|| || || ||||| ||||| || || ||| |||| ||||| | || || |||||| |
Sbjct: 133402 agttcaaagttaatagaagaaaaccaaaattcctctaaacttactaagcaattgaaactt 133343
Query: 3297 atggattctttagtgactaatgttagtgttgcctcaacagccgacgaagaatcgaatatg 3356
||||||||||| |||||||||||||||||||||||||| | || |||||| | ||||||
Sbjct: 133342 atggattctttggtgactaatgttagtgttgcctcaacttctgatgaagaaactaatatg 133283
Query: 3357 aacatggccattcagcggctttatgatgctatgcaaactgatgaagtagcacgtcgtgca 3416
|| ||||| || ||||||||||| ||||| ||||| ||||||||||| |||||||| ||
Sbjct: 133282 aatatggctatccagcggctttacgatgccatgcagactgatgaagttgcacgtcgagct 133223
Query: 3417 atacttgaaagtagaactctgacnnnnnnnttagaagaaattcaagcggagagggattcc 3476
||| | ||||||||| |||| || || ||||||||||| || || ||||||||
Sbjct: 133222 atattagaaagtagagctctaacgaagaaattggaagaaattcaggcagaaagggattct 133163
Query: 3477 ctaagtgaaaagctaggtaaagcagagcacgggctcgttgggcaattagagaacgagcta 3536
||||||||||| || | || || |||||||| |||||||| || ||||| | ||| |
Sbjct: 133162 ttaagtgaaaagttaagcaaggcggagcacggactcgttggacagttagaagatgagttg 133103
Query: 3537 cacggaagagatcgtatactggccaagaaccaaagggttatgcaacagctggaatccgaa 3596
|| | ||||||||||| | || ||||| || || |||||||| ||||||||| | ||
Sbjct: 133102 catgagagagatcgtattttagctaagaatcagagagttatgcagcagctggaagctgag 133043
Query: 3597 ctagaagaactgaaaaagaaacatcttctggaaaagcatcagcaagaagttgaactgaga 3656
||||||| |||||||||| |||||| ||||||||||||||||||| || ||| |||||
Sbjct: 133042 ttagaagagttgaaaaagaagcatcttttggaaaagcatcagcaagaggtagaattgaga 132983
Query: 3657 aaaatgttaaccatattaaattccaggcctgaagaaagct 3696
|||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 132982 aaaatgttgactatattgaattcgaggcctgaagaaagct 132943
Score = 317 bits (160), Expect = 1e-85
Identities = 388/464 (83%)
Strand = Plus / Minus
Query: 2170 gtttgaaaaagcaaccatctctaaacagcatttatcgaggtgggcctgaaattaatacaa 2229
||||||||||||| ||||||||||||| |||||| |||||||| |||| | ||||| |
Sbjct: 134469 gtttgaaaaagcagccatctctaaacaatatttatagaggtggggctgagaacaatacga 134410
Query: 2230 gcgcgtccactcttccaggagacagaactaatagaccgccaatacactatgtgcaacgca 2289
| || || |||||||||||||||||||| || ||||| || ||||| ||||||||||| |
Sbjct: 134409 gtgcatctactcttccaggagacagaacaaacagaccaccgatacattatgtgcaacgaa 134350
Query: 2290 tcctggccgataagcttacgaccgacgaaatgaaagatttatgggttaccttgaggacag 2349
||||||| || || ||||| | ||| || ||||||||||||||||| || || || || |
Sbjct: 134349 tcctggcagacaaacttactagcgatgagatgaaagatttatgggtaactttaagaactg 134290
Query: 2350 aacaattagactgggtagacgcctttatagaccatcagggtcacattgccatggctaacg 2409
|||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct: 134289 aacagttagactgggtagacgcttttatagaccatcagggtcacattgctatggctaatg 134230
Query: 2410 tattgatgaactcaatatacaagacggcgcctcgggaacatttgacgaaggagttattgg 2469
|| | |||||||| || || ||||| || || || ||| | ||||| || || ||||| |
Sbjct: 134229 tactaatgaactctatttataagactgcaccccgagaaaacttgactaaagaattattag 134170
Query: 2470 aaaaggaaaattccttttttaaatgttttagagttttatcgatgctttcacaaggtttat 2529
| || |||||||| ||||||||||| || ||||| ||||| ||||| ||||||||||| |
Sbjct: 134169 agaaagaaaattcattttttaaatgcttcagagtcttatcaatgctctcacaaggtttgt 134110
Query: 2530 atgaattcagcacgcatagactgatgaccgatactgtcgcagaaggtttgttctccacga 2589
|||| ||||| || ||||| | ||||| |||||||| ||||||||||| ||||| ||||
Sbjct: 134109 atgagttcagtacacataggttaatgactgatactgttgcagaaggtttattctctacga 134050
Query: 2590 agttggttaccaggaaaatggctactgaaattttcgtctgtatg 2633
| ||| || ||||||||||| ||||||||||| || ||||||
Sbjct: 134049 aactggccacaaggaaaatggccactgaaatttttgtttgtatg 134006
Score = 289 bits (146), Expect = 3e-77
Identities = 701/886 (79%)
Strand = Plus / Minus
Query: 1246 aaatgttgaagaattcaggttccaagaattcgaattcgaaggaaagtaactccagttcaa 1305
||||||||||||||||||| ||||| ||||||| || ||||||||| | || | ||| |
Sbjct: 135384 aaatgttgaagaattcaggctccaaacattcgaactcaaaggaaagtcattcgaattcga 135325
Query: 1306 gttccggtcttttccaaaacttgaagcgtttggctaattcaagcgcatcgaataataatg 1365
|||| ||| | |||||||| ||||||||||||||||| |||| ||| |||||| |||
Sbjct: 135324 gttctggtatattccaaaatttgaagcgtttggctaactcaaatgcaacgaatagcaata 135265
Query: 1366 ccacctctccgaacaatgcatcagaacaccagcatcctcccgttggacaggaaacatcca 1425
| ||||||| | ||||||| |||| ||||| |||| || ||| | ||| ||||
Sbjct: 135264 cgggttctccgacctatgcatcccaacaacagcactctccagtgggaaacgaagtgtcca 135205
Query: 1426 cttcatctgcatcgtcctcgtcttttagaaggctaaatggaccctccaggtctacatcca 1485
||||| ||||||| || || |||||||||| || |||| ||| || ||||||||||| |
Sbjct: 135204 cttcacctgcatcttcgtcatcttttagaaaactgaatgcaccttctaggtctacatcta 135145
Query: 1486 ctgaagcaaggccgctgaacaagaaagcgacactcaacactcaaaatctgtctcagtaca 1545
|||| || |||||| |||| || ||| ||||| | ||||| ||||| ||||||| || |
Sbjct: 135144 ctgaggcgaggccgttgaataaaaaatcgacattaaacacacaaaacttgtctcaatata 135085
Query: 1546 tgaacggcaagataagtaccgatgcgccaacatcgtcccagcatgcaaggtcgcattcag 1605
|||| || || ||||| |||| || ||| || ||||| |||||||||||||||
Sbjct: 135084 tgaatggtaaattaagtggagatgttcccgtatcctcacagcacgcaaggtcgcattcaa 135025
Query: 1606 tacagtccaaatattcgtactccaagaggacttcctctcaggcgtctaacaagctaacga 1665
| || || ||||||||||| |||||||||| ||| || |||||||| || |||||||| |
Sbjct: 135024 tgcaatcgaaatattcgtattccaagaggaattcttcacaggcgtccaataagctaacaa 134965
Query: 1666 ggcaacacactgggcagagtcattctgcgacaagtcttttatccctcggctctttaacaa 1725
|||| || || ||||| ||||| || || |||||||| | || | || || |||| |
Sbjct: 134964 ggcagcataccgggcaaagtcactccgcatcaagtcttctctctcaaggttcgctaacta 134905
Query: 1726 acttaagcaaattcaccactcctgatggcaaaatccatctagagatgccctcggacccat 1785
|||| ||||||||||| || || ||||| ||||| || |||| ||||| ||||||||||
Sbjct: 134904 acttgagcaaattcactacacccgatggtaaaatttatttagaaatgccgtcggacccat 134845
Query: 1786 acgaagtggaagttttgttcgaggacattatgtacaaaagaaacattttccaatctctat 1845
|||| |||||||||||||| || || |||||||| |||||||| ||||| || ||| |||
Sbjct: 134844 acgaggtggaagttttgtttgaagatattatgtataaaagaaatatttttcagtctttat 134785
Query: 1846 caggtgacaaacaagaagagctaatgagctacagtacggaaaagaaatggttgattgtga 1905
||| ||||||||||||| || ||| ||||||| | || ||||||||| ||||||| |
Sbjct: 134784 cagaggacaaacaagaagctctgatgggctacagcattgagaagaaatggctgattgtta 134725
Query: 1906 aacaagatttacagaacgaattgaaaaagattagagcaaacacgacttcttcttccgctg 1965
| || |||||||| || || | ||||| || |||||||||| || ||||||||| |||
Sbjct: 134724 agcaggatttacaaaatgagctaaaaaaaatgcgagcaaacactacatcttcttccactg 134665
Query: 1966 cttctcgtacttcgatagcatcggatcaacatcccatactcacggctaattcaacacttt 2025
| || | |||||||| || ||||| || ||||| || || |||||||||||| | ||||
Sbjct: 134664 cctccagaacttcgatggcgtcggaccatcatcctatccttacggctaattcatctcttt 134605
Query: 2026 catcgcctaaatctgctctgatgacgagtgcttcttctccgacttctactgtatatagta 2085
| || || ||||||| | ||||||| || || |||||||| || || |||||||| || |
Sbjct: 134604 cgtctcccaaatctgttttgatgacaagcgcctcttctcccacctcaactgtatacagca 134545
Query: 2086 acaccctaaaccattccaccactctttcatctgtgggcacgtcaac 2131
||| |||| ||||| || ||||||||||| || || ||||||||
Sbjct: 134544 acagtttaaatcattctactactctttcatcggtaggtacgtcaac 134499
Score = 200 bits (101), Expect = 2e-50
Identities = 512/649 (78%)
Strand = Plus / Minus
Query: 35 catcccccttcatgatcagcatcgagaattccggcaccaaggtcctcccagacatattca 94
|||| ||||| ||||| ||||| |||||||| ||||| || || |||||||| ||||| |
Sbjct: 136636 catcgccctttatgataagcattgagaattcaggcacaaaagttctcccagatatattta 136577
Query: 95 acgcggtcgtgctgatcaccatagtctccgcgggcaactccaacgtgtacatcggctcaa 154
||||||||||||| |||||||| | ||||| || ||||| || |||||||| |||||||
Sbjct: 136576 acgcggtcgtgctaatcaccattctttccgcaggtaactctaatgtgtacattggctcaa 136517
Query: 155 gggtcctgtacagtctatccaaaaacgacttggcgccccggttcctgtcgatcgtgacca 214
| || ||||| ||||| || ||||| ||||||||| ||||| |||| | ||||||||
Sbjct: 136516 gagtactgtatagtctgtctaaaaatagcttggcgccaaggttcttgtctaacgtgacca 136457
Query: 215 agggcggggtcccctactttgccgttctggcaacatctgtattcgggttcctggccttct 274
|| || || || |||||| | ||||| | ||||| || ||||| || |||| ||||
Sbjct: 136456 gaggtggtgttccatacttttctgttctatctacatccgtgttcggatttttggctttct 136397
Query: 275 tggaaacctccgcaggtagtggcaaggctttcaactggctgttaaacattactggtgtgg 334
| || || ||||| || |||||||| || |||||| | || ||||| ||||||||||
Sbjct: 136396 tagaggtttctgcaggcagcggcaaggcctttaactggttattgaacataactggtgtgg 136337
Query: 335 caggatttttcgcatggctgctgatttcattttcgcacatccgctttatgcaagcgataa 394
| || || || || ||||| ||||||||||||| || ||||| || |||||||| ||||
Sbjct: 136336 ccggtttctttgcctggcttttgatttcattttctcatatccgtttcatgcaagccataa 136277
Query: 395 gcaaacgcggaatatcgaggaacgatctgccttacaaggctcgcatgatgccttatctag 454
| ||||| || ||||||||| | || | ||||| || |||| |||||||||| | | |
Sbjct: 136276 ggaaacgtggtatatcgagggatgacttaccttataaagctcaaatgatgccttttttgg 136217
Query: 455 cctactacgcatcctttttcatcgccctgatagtcctgatccagggcttcactgcatttg 514
| || || ||||| ||||||||||| || || || ||||||||||||||||| || || |
Sbjct: 136216 catattatgcatcttttttcatcgctctaattgttctgatccagggcttcaccgctttcg 136157
Query: 515 cgcccagtttccagcctgtagatttcgttgccgcatacatatccgtcttcctatttgttg 574
| || | ||| |||||| |||| || || || ||||| ||||| | ||||||||| | |
Sbjct: 136156 cacctacttttcagcctatagactttgtcgctgcatatatatcaatattcctatttttgg 136097
Query: 575 caatctggttttcattccagctttggttcaagtgtcccataatcttgaagttgcaggacg 634
| || ||||| |||||||| ||||||| ||||| | | || ||| |||| |||||||
Sbjct: 136096 ccatatggttatcattccaagtttggtttaagtgccgcttactctggaagctgcaggata 136037
Query: 635 tcgacatagattccgaccgccgcgaaatagaggagcaggtatggataga 683
|||| || ||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 136036 tcgatatcgattctgaccgccggcaaatagaggagttggtatggataga 135988
Score = 174 bits (88), Expect = 1e-42
Identities = 154/176 (87%)
Strand = Plus / Minus
Query: 4041 aaactaaatgatttaaggagggccttggctgaaattcaaatggaaagtaatgatatttcc 4100
||||||||||| ||||| |||| ||| ||||||| ||||||||||||||||||||||||
Sbjct: 132598 aaactaaatgacctaaggcgggctttgactgaaatccaaatggaaagtaatgatatttcc 132539
Query: 4101 aagttcaatgtcgaagaacgtgttaatgagctatttaacgaaaagaagtctttggctttg 4160
|| || || ||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct: 132538 aaatttaacgtcgaagaacgtgttaatgagctatttaatgaaaagaaatctctggcttta 132479
Query: 4161 aagaggttaaaggaactagaaaccaaatataagggattcggtattgattttaatgt 4216
||||| | || ||||||||||| ||||| || ||||| |||||||| ||||||||
Sbjct: 132478 aagagactgaaagaactagaaacaaaatacaaaggatttggtattgactttaatgt 132423
Score = 151 bits (76), Expect = 2e-35
Identities = 169/200 (84%)
Strand = Plus / Minus
Query: 3756 aatattcagaaggtattacaggacggattgtcgagagcgaagaaagattataaagatgac 3815
||||| || ||||| |||||||||||||| || ||||| || || ||||| || |||||
Sbjct: 132883 aatatccaaaaggtgttacaggacggattatcaagagcaaaaaaggattacaaggatgat 132824
Query: 3816 tcgaaaaaattcggtatgacacttcaacctaataaaaggctaaagatgctaagaatgcaa 3875
|| ||||||||||| |||||||||||||||||||| || |||| ||| |||||||||||
Sbjct: 132823 tcaaaaaaattcggcatgacacttcaacctaataagagattaaaaatgttaagaatgcaa 132764
Query: 3876 atggaaaatattgaaaatgaagcaagacagttggaaatgacaaactttgctgagtttgaa 3935
||||||||||||||||||||||| || || | || |||||||| |||||||| |||||
Sbjct: 132763 atggaaaatattgaaaatgaagccaggcaactagagatgacaaattttgctgaatttgag 132704
Query: 3936 aaggaacgcctcgaacctcc 3955
|| || || || ||||||||
Sbjct: 132703 aaagatcgtcttgaacctcc 132684
Score = 129 bits (65), Expect = 7e-29
Identities = 119/137 (86%)
Strand = Plus / Minus
Query: 4437 gaaatataccaagatgcttctccaagtcaagaaagaagaggcgagtactcagagctatct 4496
|||||||||||||| || ||||||| ||||||| ||| |||| ||||||||||||||
Sbjct: 132196 gaaatataccaagacgcatctccaactcaagaactaaggagcgaacactcagagctatct 132137
Query: 4497 gcaggatcaggtcccggatcttttcttgatgccttatcccaaaaatatggcactggtcaa 4556
||||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 132136 tcaggatcaggtcctgggtcttttctcgatgccttatctcaaaaatatggtactggtcaa 132077
Query: 4557 aacgtcaccgcatcggc 4573
|| || || ||||||||
Sbjct: 132076 aatgttactgcatcggc 132060
Score = 85.7 bits (43), Expect = 1e-15
Identities = 101/119 (84%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 890 tttttgacatggaagaggcaagaagagaaaaaacagatgtgg-aaactataatccctttt 948
|||||||| ||||||||| || | ||||||||||||||||| |||||| ||||||||||
Sbjct: 135742 tttttgacgtggaagagggaaagaaagaaaaaacagatgtggaaaactagaatccctttt 135683
Query: 949 acaaacaatagcacggacgctttccggagacaacaagacactgacggctgtgtggtaat 1007
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Sbjct: 135682 aagaacaatagcacggacccttcctacagataagaggacactgacggctgtgtgttaat 135624
Database: /data/blast/yeast.nt
Posted date: Aug 12, 2003 12:35 PM
Number of letters in database: 12,155,026
Number of sequences in database: 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,084
Number of Sequences: 17
Number of extensions: 45084
Number of successful extensions: 26
Number of sequences better than 1.0e-10: 1
length of query: 5116
length of database: 12,155,026
effective HSP length: 18
effective length of query: 5098
effective length of database: 12,154,720
effective search space: 61964762560
effective search space used: 61964762560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)
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