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# cmsearch :: search CM(s) against a sequence database
# INFERNAL 1.1.1 (July 2014)
# Copyright (C) 2014 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query CM file: Cobalamin.c.cm
# target sequence database: mrum-tRNAs10.fa
# number of worker threads: 4
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Cobalamin [CLEN=191]
Accession: RF00174
Description: Cobalamin riboswitch
Hit scores:
rank E-value score bias sequence start end mdl trunc gc description
---- --------- ------ ----- -------- ------ ------ --- ----- ---- -----------
[No hits detected that satisfy reporting thresholds]
Hit alignments:
[No hits detected that satisfy reporting thresholds]
Internal CM pipeline statistics summary:
----------------------------------------
Query model(s): 1 (191 consensus positions)
Target sequences: 10 (1544 residues searched)
Target sequences re-searched for truncated hits: 10 (4632 residues re-searched)
Windows passing local HMM SSV filter: 1 (0.01198); expected (0.35)
Windows passing local HMM Viterbi filter: (off)
Windows passing local HMM Viterbi bias filter: (off)
Windows passing local HMM Forward filter: 0 (0); expected (0.02)
Windows passing local HMM Forward bias filter: 0 (0); expected (0.02)
Windows passing glocal HMM Forward filter: 0 (0); expected (0.02)
Windows passing glocal HMM Forward bias filter: 0 (0); expected (0.02)
Envelopes passing glocal HMM envelope defn filter: 0 (0); expected (0.02)
Envelopes passing local CM CYK filter: 0 (0); expected (0.0001)
Total CM hits reported: 0 (0); includes 0 truncated hit(s)
# CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.03
//
[ok]
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