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|
TBLASTN 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CYS1_DICDI
(343 letters)
Database: alu.n
327 sequences; 80,506 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|alu|L13391_HSAL003871 (Alu-J) 23 0.64
gnl|alu|M30798_HSAL001637 (Alu-J) 20 5.6
gnl|alu|M64231_HSAL003023 (Alu-Sb) 20 5.6
gnl|alu|Y00326_HSAL000959 (Alu-J) 19 9.5
gnl|alu|X69908_HSAL000290 (Alu-J) 19 9.5
gnl|alu|M65235_HSAL002711 (Alu-Sx) 19 9.5
gnl|alu|M80812_HSAL001801 (Alu-J) 19 9.5
>gnl|alu|L13391_HSAL003871 (Alu-J)
Length = 193
Score = 23.1 bits (48), Expect = 0.64
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 137 GQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQ 168
G CGSCW + QHF ++ LS +
Sbjct: 19 GYCGSCW--------KSQHFGRLRQVEGLSSE 90
>gnl|alu|M30798_HSAL001637 (Alu-J)
Length = 331
Score = 20.0 bits (40), Expect = 5.6
Identities = 6/7 (85%), Positives = 7/7 (99%)
Frame = +3
Query: 278 PCNPNSL 284
PCNPN+L
Sbjct: 12 PCNPNTL 32
>gnl|alu|M64231_HSAL003023 (Alu-Sb)
Length = 257
Score = 20.0 bits (40), Expect = 5.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 294 SAKNTIFRKNMPYW 307
S KNT +KN P W
Sbjct: 72 STKNTKKKKNGPAW 113
>gnl|alu|Y00326_HSAL000959 (Alu-J)
Length = 260
Score = 19.2 bits (38), Expect = 9.5
Identities = 6/10 (60%), Positives = 6/10 (60%)
Frame = -2
Query: 177 CMEYEGEEAC 186
C EY GE C
Sbjct: 34 CWEYRGEPPC 5
>gnl|alu|X69908_HSAL000290 (Alu-J)
Length = 292
Score = 19.2 bits (38), Expect = 9.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Frame = -1
Query: 118 IPTAFDWRTRGAVTPVK---NQGQCGSCWS 144
+P +WR ++ P Q C S WS
Sbjct: 256 LPILDNWRDHSSLKPPAPGFKQSSCLSFWS 167
>gnl|alu|M65235_HSAL002711 (Alu-Sx)
Length = 325
Score = 19.2 bits (38), Expect = 9.5
Identities = 5/7 (71%), Positives = 5/7 (71%)
Frame = -1
Query: 137 GQCGSCW 143
G C SCW
Sbjct: 115 GACSSCW 95
>gnl|alu|M80812_HSAL001801 (Alu-J)
Length = 202
Score = 19.2 bits (38), Expect = 9.5
Identities = 5/10 (50%), Positives = 7/10 (70%)
Frame = +2
Query: 168 QNLVDCDHEC 177
+ +V CDH C
Sbjct: 113 ETIVHCDHTC 142
Database: alu.n
Posted date: Feb 26, 2001 4:36 AM
Number of letters in database: 80,506
Number of sequences in database: 327
Lambda K H
0.316 0.135 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35241
Number of Sequences: 327
Number of extensions: 483
Number of successful extensions: 7
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 343
length of database: 26,835
effective HSP length: 31
effective length of query: 312
effective length of database: 16,698
effective search space: 5209776
effective search space used: 5209776
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 36 (19.3 bits)
S2: 38 (19.2 bits)
TBLASTN 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ALEU_HORVU
(362 letters)
Database: alu.n
327 sequences; 80,506 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|alu|L13391_HSAL003871 (Alu-J) 23 0.51
gnl|alu|M59213_HSAL001809 (Alu-J) 20 7.5
gnl|alu|M19889_HSAL002725 (Alu-J) 19 9.9
gnl|alu|X05322_HSAL000874 (Alu-Sx) 19 9.9
>gnl|alu|L13391_HSAL003871 (Alu-J)
Length = 193
Score = 23.5 bits (49), Expect = 0.51
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +1
Query: 164 HCGSCWTFSTTGAL---EAAYTQATGKNISLSEQQLVDCA 200
+CGSCW G L E ++ G +I ++ DCA
Sbjct: 22 YCGSCWKSQHFGRLRQVEGLSSEVRGSSIQVTVS--YDCA 135
>gnl|alu|M59213_HSAL001809 (Alu-J)
Length = 339
Score = 19.6 bits (39), Expect = 7.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 164 HCGSCWTFSTTG 175
HCGSC F G
Sbjct: 8 HCGSCL*FQQFG 43
>gnl|alu|M19889_HSAL002725 (Alu-J)
Length = 183
Score = 19.2 bits (38), Expect = 9.9
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = -1
Query: 236 GVNGVCHY 243
G NG+CH+
Sbjct: 54 GTNGMCHH 31
>gnl|alu|X05322_HSAL000874 (Alu-Sx)
Length = 225
Score = 19.2 bits (38), Expect = 9.9
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -3
Query: 237 VNGVCHYKAEN 247
+ GVCHY N
Sbjct: 163 ITGVCHYAQLN 131
Database: alu.n
Posted date: Feb 26, 2001 4:36 AM
Number of letters in database: 80,506
Number of sequences in database: 327
Lambda K H
0.318 0.132 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31527
Number of Sequences: 327
Number of extensions: 291
Number of successful extensions: 6
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 362
length of database: 26,835
effective HSP length: 32
effective length of query: 330
effective length of database: 16,371
effective search space: 5402430
effective search space used: 5402430
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 36 (19.4 bits)
S2: 38 (19.2 bits)
TBLASTN 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CATH_HUMAN
(335 letters)
Database: alu.n
327 sequences; 80,506 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|alu|M63796_HSAL002417 (Alu-J) 23 0.85
gnl|alu|L13391_HSAL003871 (Alu-J) 22 1.1
gnl|alu|M65235_HSAL002711 (Alu-Sx) 21 2.5
gnl|alu|M88005_HSAL001281 (Alu-Sx) 21 3.3
gnl|alu|M64231_HSAL003024 (Alu-J) 20 4.3
>gnl|alu|M63796_HSAL002417 (Alu-J)
Length = 322
Score = 22.7 bits (47), Expect = 0.85
Identities = 11/34 (32%), Positives = 15/34 (43%)
Frame = +1
Query: 302 SWGPQWGMNGYFLIERGKNMCGLAACASYPIPLV 335
SW P W + KN G+ A Y +P+V
Sbjct: 76 SWRPAWASGHLIFTKNKKN*LGMVV*ACY-VPVV 174
>gnl|alu|L13391_HSAL003871 (Alu-J)
Length = 193
Score = 22.3 bits (46), Expect = 1.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +1
Query: 136 GACGSCWTFSTTGALESAIAIAT 158
G CGSCW G L +++
Sbjct: 19 GYCGSCWKSQHFGRLRQVEGLSS 87
>gnl|alu|M65235_HSAL002711 (Alu-Sx)
Length = 325
Score = 21.2 bits (43), Expect = 2.5
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -1
Query: 136 GACGSCW 142
GAC SCW
Sbjct: 115 GACSSCW 95
>gnl|alu|M88005_HSAL001281 (Alu-Sx)
Length = 225
Score = 20.8 bits (42), Expect = 3.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 118 PSVDWRKKGNFVSPVKNQGACGSCWTFST 146
P++ NFV VKN+ +C W+ ++
Sbjct: 165 PTIPNASLTNFVFFVKNRVSCWPGWSLNS 79
>gnl|alu|M64231_HSAL003024 (Alu-J)
Length = 287
Score = 20.4 bits (41), Expect = 4.3
Identities = 10/24 (41%), Positives = 13/24 (53%)
Frame = -2
Query: 96 WSEPQNCSATKSNYLRGTGPYPPS 119
WS + A + LRG+G PPS
Sbjct: 232 WSAVASIMAHYTLGLRGSGDPPPS 161
Database: alu.n
Posted date: Feb 26, 2001 4:36 AM
Number of letters in database: 80,506
Number of sequences in database: 327
Lambda K H
0.319 0.134 0.436
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44068
Number of Sequences: 327
Number of extensions: 498
Number of successful extensions: 7
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 335
length of database: 26,835
effective HSP length: 29
effective length of query: 306
effective length of database: 17,352
effective search space: 5309712
effective search space used: 5309712
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 36 (19.5 bits)
S2: 38 (19.2 bits)
TBLASTN 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CATH_RAT
(333 letters)
Database: alu.n
327 sequences; 80,506 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|alu|L13391_HSAL003871 (Alu-J) 24 0.36
gnl|alu|M65235_HSAL002711 (Alu-Sx) 21 2.4
gnl|alu|L11016_HSAL003845 (Alu-J) 19 9.2
>gnl|alu|L13391_HSAL003871 (Alu-J)
Length = 193
Score = 23.9 bits (50), Expect = 0.36
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 134 GACGSCWTFSTTGALESAVAIAS 156
G CGSCW G L ++S
Sbjct: 19 GYCGSCWKSQHFGRLRQVEGLSS 87
>gnl|alu|M65235_HSAL002711 (Alu-Sx)
Length = 325
Score = 21.2 bits (43), Expect = 2.4
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -1
Query: 134 GACGSCW 140
GAC SCW
Sbjct: 115 GACSSCW 95
>gnl|alu|L11016_HSAL003845 (Alu-J)
Length = 197
Score = 19.2 bits (38), Expect = 9.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 124 GNVVSPVKNQGACGS 138
GN+V P + +CGS
Sbjct: 93 GNIVRPHFYKASCGS 137
Database: alu.n
Posted date: Feb 26, 2001 4:36 AM
Number of letters in database: 80,506
Number of sequences in database: 327
Lambda K H
0.319 0.131 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35152
Number of Sequences: 327
Number of extensions: 361
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 333
length of database: 26,835
effective HSP length: 31
effective length of query: 302
effective length of database: 16,698
effective search space: 5042796
effective search space used: 5042796
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 35 (19.0 bits)
S2: 38 (19.2 bits)
TBLASTN 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CATL_HUMAN
(333 letters)
Database: alu.n
327 sequences; 80,506 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|alu|L13391_HSAL003871 (Alu-J) 22 1.1
gnl|alu|M63544_HSAL002045 (Alu-J) 21 3.1
gnl|alu|Z17809_HSAL003365 (Alu-Sx) 20 7.0
gnl|alu|X16277_HSAL000821 (Alu-J) 19 9.2
gnl|alu|M65235_HSAL002711 (Alu-Sx) 19 9.2
>gnl|alu|L13391_HSAL003871 (Alu-J)
Length = 193
Score = 22.3 bits (46), Expect = 1.1
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 133 GQCGSCWAFSATGAL 147
G CGSCW G L
Sbjct: 19 GYCGSCWKSQHFGRL 63
>gnl|alu|M63544_HSAL002045 (Alu-J)
Length = 265
Score = 20.8 bits (42), Expect = 3.1
Identities = 9/22 (40%), Positives = 14/22 (62%), Gaps = 2/22 (9%)
Frame = -2
Query: 260 KEGIYFEP--DCSSEDMDHGVL 279
++G+ P +CSS MDH +L
Sbjct: 252 RQGLALSPRLECSSAIMDHCIL 187
>gnl|alu|Z17809_HSAL003365 (Alu-Sx)
Length = 207
Score = 19.6 bits (39), Expect = 7.0
Identities = 6/14 (42%), Positives = 10/14 (70%)
Frame = -3
Query: 174 GNEGCNGGLMDYAF 187
G +GC GLM +++
Sbjct: 172 GVQGCGHGLMGFSY 131
>gnl|alu|X16277_HSAL000821 (Alu-J)
Length = 287
Score = 19.2 bits (38), Expect = 9.2
Identities = 6/14 (42%), Positives = 11/14 (77%)
Frame = +3
Query: 64 QEYREGKHSFTMAM 77
QE+ G+HS T+++
Sbjct: 72 QEFEPGQHSETLSL 113
>gnl|alu|M65235_HSAL002711 (Alu-Sx)
Length = 325
Score = 19.2 bits (38), Expect = 9.2
Identities = 5/7 (71%), Positives = 5/7 (71%)
Frame = -1
Query: 133 GQCGSCW 139
G C SCW
Sbjct: 115 GACSSCW 95
Database: alu.n
Posted date: Feb 26, 2001 4:36 AM
Number of letters in database: 80,506
Number of sequences in database: 327
Lambda K H
0.317 0.133 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39061
Number of Sequences: 327
Number of extensions: 451
Number of successful extensions: 9
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 333
length of database: 26,835
effective HSP length: 31
effective length of query: 302
effective length of database: 16,698
effective search space: 5042796
effective search space used: 5042796
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 36 (19.3 bits)
S2: 38 (19.2 bits)
TBLASTN 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CATL_RAT
(334 letters)
Database: alu.n
327 sequences; 80,506 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|alu|Z17809_HSAL003365 (Alu-Sx) 22 1.4
gnl|alu|L13391_HSAL003871 (Alu-J) 22 1.9
gnl|alu|Z30166_HSAL006097 (Alu-J) 21 2.5
gnl|alu|L26953_HSAL004755 (Alu-Sx) 20 4.2
gnl|alu|M65235_HSAL002711 (Alu-Sx) 19 9.5
>gnl|alu|Z17809_HSAL003365 (Alu-Sx)
Length = 207
Score = 21.9 bits (45), Expect = 1.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 174 GNQGCNGGLMDFAF 187
G QGC GLM F++
Sbjct: 172 GVQGCGHGLMGFSY 131
>gnl|alu|L13391_HSAL003871 (Alu-J)
Length = 193
Score = 21.6 bits (44), Expect = 1.9
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +1
Query: 133 GQCGSCW 139
G CGSCW
Sbjct: 19 GYCGSCW 39
>gnl|alu|Z30166_HSAL006097 (Alu-J)
Length = 168
Score = 21.2 bits (43), Expect = 2.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 108 EPLMLQIPKTVDWREKGCVTPV 129
+P L +PK D+R C P+
Sbjct: 77 DPAHLSLPKCWDYRLSHCAWPL 12
>gnl|alu|L26953_HSAL004755 (Alu-Sx)
Length = 337
Score = 20.4 bits (41), Expect = 4.2
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1
Query: 171 HDQGNQGCN 179
HD G +GCN
Sbjct: 223 HDPGGRGCN 249
>gnl|alu|M65235_HSAL002711 (Alu-Sx)
Length = 325
Score = 19.2 bits (38), Expect = 9.5
Identities = 5/7 (71%), Positives = 5/7 (71%)
Frame = -1
Query: 133 GQCGSCW 139
G C SCW
Sbjct: 115 GACSSCW 95
Database: alu.n
Posted date: Feb 26, 2001 4:36 AM
Number of letters in database: 80,506
Number of sequences in database: 327
Lambda K H
0.317 0.134 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36291
Number of Sequences: 327
Number of extensions: 428
Number of successful extensions: 8
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 334
length of database: 26,835
effective HSP length: 30
effective length of query: 304
effective length of database: 17,025
effective search space: 5175600
effective search space used: 5175600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 36 (19.4 bits)
S2: 38 (19.2 bits)
TBLASTN 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAPA_CARPA
(345 letters)
Database: alu.n
327 sequences; 80,506 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|alu|L13391_HSAL003871 (Alu-J) 22 1.1
gnl|alu|X68486_HSAL004968 (Alu-J) 20 5.7
gnl|alu|M65235_HSAL002711 (Alu-Sx) 20 5.7
gnl|alu|M78078_HSAL003530 (Alu-Sc) 19 9.8
gnl|alu|M63322_HSAL001805 (Alu-J) 19 9.8
>gnl|alu|L13391_HSAL003871 (Alu-J)
Length = 193
Score = 22.3 bits (46), Expect = 1.1
Identities = 9/21 (42%), Positives = 12/21 (56%), Gaps = 3/21 (14%)
Frame = +1
Query: 153 GSCGSCWA---FSAVVTIEGI 170
G CGSCW F + +EG+
Sbjct: 19 GYCGSCWKSQHFGRLRQVEGL 81
>gnl|alu|X68486_HSAL004968 (Alu-J)
Length = 249
Score = 20.0 bits (40), Expect = 5.7
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Frame = -2
Query: 14 AICLFVYMGLSFGDFSIVGYS----------QNDLTSTERLIQLFESWM 52
A+CLF++ FG + + N L + + + ESW+
Sbjct: 149 AVCLFIFSFFFFGRNGLFAHVAQAGLALLG*SNPLALASQSLGITESWV 3
>gnl|alu|M65235_HSAL002711 (Alu-Sx)
Length = 325
Score = 20.0 bits (40), Expect = 5.7
Identities = 5/7 (71%), Positives = 6/7 (85%)
Frame = -1
Query: 153 GSCGSCW 159
G+C SCW
Sbjct: 115 GACSSCW 95
>gnl|alu|M78078_HSAL003530 (Alu-Sc)
Length = 158
Score = 19.2 bits (38), Expect = 9.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 204 ALQLVAQYGIHYRN 217
+ LVAQ G+ +RN
Sbjct: 104 SFNLVAQAGVQWRN 63
>gnl|alu|M63322_HSAL001805 (Alu-J)
Length = 345
Score = 19.2 bits (38), Expect = 9.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 73 KDNLKYIDETNKKNN 87
K+ +KY+ + NKK +
Sbjct: 284 KNKIKYVFKNNKKKS 328
Database: alu.n
Posted date: Feb 26, 2001 4:36 AM
Number of letters in database: 80,506
Number of sequences in database: 327
Lambda K H
0.318 0.138 0.428
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33866
Number of Sequences: 327
Number of extensions: 356
Number of successful extensions: 7
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 345
length of database: 26,835
effective HSP length: 30
effective length of query: 315
effective length of database: 17,025
effective search space: 5362875
effective search space used: 5362875
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 36 (19.4 bits)
S2: 38 (19.2 bits)
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