1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272
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FASTA searches a protein or DNA sequence data bank
version 3.3t08 Jan. 17, 2001
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
t/data/cysprot1.fa: 343 aa
>CYS1_DICDI
vs /data_2/jason/blastdb/ecoli.aa library
searching /data_2/jason/blastdb/ecoli.aa library
opt E()
< 20 0 0:
22 0 0: one = represents 7 library sequences
24 0 0:
26 0 0:
28 0 1:*
30 4 6:*
32 13 23:== *
34 62 62:========*
36 130 127:==================*
38 252 210:=============================*======
40 310 293:=========================================*===
42 405 359:===================================================*======
44 401 396:========================================================*=
46 386 403:======================================================== *
48 348 386:================================================== *
50 360 352:==================================================*=
52 290 309:========================================== *
54 264 264:=====================================*
56 215 221:===============================*
58 145 181:===================== *
60 144 147:====================*
62 119 118:================*
64 96 94:=============*
66 72 74:==========*
68 65 58:========*=
70 54 46:======*=
72 30 36:=====*
74 19 28:===*
76 26 22:===*
78 18 17:==*
80 19 13:=*=
82 14 10:=*
84 8 8:=*
86 4 6:*
88 2 5:* inset = represents 1 library sequences
90 4 4:*
92 3 3:* :==*
94 2 2:* :=*
96 1 2:* :=*
98 1 1:* :*
100 0 1:* :*
102 0 1:* :*
104 2 1:* :*=
106 0 0: *
108 1 0:= *=
110 0 0: *
112 0 0: *
114 0 0: *
116 0 0: *
118 0 0: *
>120 0 0: *
1358987 residues in 4289 sequences
Expectation_n fit: rho(ln(x))= 5.9493+/-0.00202; mu= 2.7408+/- 0.115
mean_var=77.5610+/-17.011, 0's: 0 Z-trim: 0 B-trim: 2 in 1/41
Lambda= 0.1456
Kolmogorov-Smirnov statistic: 0.0234 (N=29) at 44
FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, gap-pen: -12/ -2, width: 16
Scan time: 1.110
The best scores are: opt bits E(4289)
gi|1787478|gb|AAC74309.1| (AE000221) nitrate redu ( 512) 92 29 1.2
gi|1790635|gb|AAC77148.1| (AE000491) putative DEO ( 251) 84 27 2.1
gi|1786590|gb|AAC73494.1| (AE000145) orf, hypothe ( 94) 78 26 2.1
gi|1790853|gb|AAC77345.1| (AE000509) soluble lyti ( 654) 84 28 4.8
gi|1789307|gb|AAC75975.1| (AE000377) biosynthetic ( 658) 83 27 5.6
gi|1788174|gb|AAC74937.1| (AE000280) orf, hypothe ( 199) 74 25 7.4
gi|1789138|gb|AAC75818.1| (AE000361) putative kin ( 492) 79 26 7.8
gi|1789427|gb|AAC76084.1| (AE000386) orf, hypothe ( 354) 76 26 9.1
>>gi|1787478|gb|AAC74309.1| (AE000221) nitrate reductase (512 aa)
initn: 35 init1: 35 opt: 92 Z-score: 109.2 bits: 29.2 E(): 1.2
Smith-Waterman score: 92; 23.936% identity (26.012% ungapped) in 188 aa overlap (125-305:2-181)
100 110 120 130 140 150
CYS1_D NKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTT-GNV--
. :. : : : .: .: . :.: ::
gi|178 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWT
10 20 30
160 170 180 190 200
CYS1_D --EGQHFISQNKLVSLSEQNLVDCDHECME-YEGEEACDEGCNGGLQPNAYNYIIKNGGI
:: .. :.. . :.. : : .: :.: . :: ::: : . : :
gi|178 SREGVEYAWFNNVETKPGQGF-PTDWENQEKYKGGWI--RKINGKLQPRMGNRAMLLGKI
40 50 60 70 80
210 220 230 240 250 260
CYS1_D QTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGP-LAIAADAVEW
.. : . .:. :. . . :.. . . :: .: . .:
gi|178 FANPHLPGIDDYYEPFDFDYQNLHTAPEG----SKSQPIARPRSLITGERMAKIEKGPNW
90 100 110 120 130 140
270 280 290 300 310 320
CYS1_D QFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRR
. .:: :: . ...:. : . :: .. : .:
gi|178 EDDLGGEFDKLAKDKNFDN-IQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYK
150 160 170 180 190 200
330 340
CYS1_D GKNTCGVSNFVSTSII
gi|178 REEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETC
210 220 230 240 250 260
>>gi|1790635|gb|AAC77148.1| (AE000491) putative DEOR-typ (251 aa)
initn: 46 init1: 46 opt: 84 Z-score: 104.9 bits: 27.4 E(): 2.1
Smith-Waterman score: 84; 22.078% identity (23.288% ungapped) in 77 aa overlap (99-171:119-195)
70 80 90 100 110 120
CYS1_D HKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRG
:.:. ::.:.:: :. .:. ...
gi|179 QLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKS
90 100 110 120 130 140
130 140 150 160 170 180
CYS1_D AVTPVKNQGQCGSC----WSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEE
.. ::. .: : :.. .. .. . . . :....::....
gi|179 QSITLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSS
150 160 170 180 190 200
190 200 210 220 230 240
CYS1_D ACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKN
gi|179 KIGERAGMLFSRADQIDMLITGKNANPEILQQLEAQGVSILRV
210 220 230 240 250
>>gi|1786590|gb|AAC73494.1| (AE000145) orf, hypothetical (94 aa)
initn: 37 init1: 37 opt: 78 Z-score: 104.8 bits: 25.9 E(): 2.1
Smith-Waterman score: 78; 36.842% identity (43.750% ungapped) in 38 aa overlap (242-278:42-74)
220 230 240 250 260 270
CYS1_D SSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFY-
:.. ::..: . : ::..:: :
gi|178 VKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLP-----DATDWQVYE
20 30 40 50 60
280 290 300 310 320 330
CYS1_D IGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKN
:.::..:
gi|178 AGSVFNVPGHSEFHLQVAEPTSYLCRYL
70 80 90
>>gi|1790853|gb|AAC77345.1| (AE000509) soluble lytic mur (654 aa)
initn: 61 init1: 61 opt: 84 Z-score: 98.5 bits: 27.6 E(): 4.8
Smith-Waterman score: 84; 32.692% identity (34.694% ungapped) in 52 aa overlap (104-152:104-155)
80 90 100 110 120 130
CYS1_D KFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPV
:: : :...:.: . ::: : .:
gi|179 YPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE
80 90 100 110 120 130
140 150 160 170 180 190
CYS1_D K---NQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEGC
: ...::. .. .::. :
gi|179 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY
140 150 160 170 180 190
>>gi|1789307|gb|AAC75975.1| (AE000377) biosynthetic argi (658 aa)
initn: 41 init1: 41 opt: 83 Z-score: 97.3 bits: 27.4 E(): 5.6
Smith-Waterman score: 83; 23.913% identity (24.176% ungapped) in 92 aa overlap (178-268:315-406)
150 160 170 180 190 200
CYS1_D TGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEA-CDEGCNGGLQPNAYNYIIKNG
..::: .. : . : ::. : : : :
gi|178 TGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIG
290 300 310 320 330 340
210 220 230 240 250 260
CYS1_D GIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVE
:.. :. . . .:. . .::. . .:: .. . .: :. .
gi|178 DACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWET
350 360 370 380 390 400
270 280 290 300 310 320
CYS1_D WQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLR
::
gi|178 WQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQLYLSMCHEVQKQLD
410 420 430 440 450 460
>>gi|1788174|gb|AAC74937.1| (AE000280) orf, hypothetical (199 aa)
initn: 46 init1: 46 opt: 74 Z-score: 95.2 bits: 25.2 E(): 7.4
Smith-Waterman score: 74; 43.750% identity (50.000% ungapped) in 32 aa overlap (308-335:110-141)
280 290 300 310 320 330
CYS1_D PCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRR-GKNT---CG
:.: .::: .: . . ::: : .: ::
gi|178 PVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCG
80 90 100 110 120 130
340
CYS1_D VSNFVSTSII
.:.
gi|178 ISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL
140 150 160 170 180 190
>>gi|1789138|gb|AAC75818.1| (AE000361) putative kinase [ (492 aa)
initn: 36 init1: 36 opt: 79 Z-score: 94.7 bits: 26.5 E(): 7.8
Smith-Waterman score: 84; 19.136% identity (21.233% ungapped) in 162 aa overlap (34-192:165-313)
10 20 30 40 50 60
CYS1_D ILLFVLAVFTVFVSSRGIPPEEQSQFLEFQDKFNKKYSHEEYLERFEIFKSNLGKIEELN
:::: ...: .. . ::.:
gi|178 GEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIP---RHMLFDVQMPGTVLGHITPQA
140 150 160 170 180 190
70 80 90 100 110 120
CYS1_D LIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFD
.: . : : .: . . :... :... .: ... . . . :.:.
gi|178 ALATHFPAGLPV-VCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAY-
200 210 220 230 240
130 140 150 160 170 180
CYS1_D WRTRGAVTPV---KNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEY
: ... . .. : . :. : .. :. .:.. . .:: ..:.. :.
gi|178 WPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVP-
250 260 270 280 290 300
190 200 210 220 230 240
CYS1_D EGEEACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTM
::::
gi|178 -------PGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNY
310 320 330 340 350 360
>>gi|1789427|gb|AAC76084.1| (AE000386) orf, hypothetical (354 aa)
initn: 65 init1: 40 opt: 76 Z-score: 93.5 bits: 25.8 E(): 9.1
Smith-Waterman score: 76; 22.619% identity (23.899% ungapped) in 168 aa overlap (141-303:81-244)
120 130 140 150 160 170
CYS1_D DDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNL
: :. . :: : .::. . :
gi|178 GDKIWQSSEYFMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNG
60 70 80 90 100 110
180 190 200 210 220
CYS1_D VDCDHECMEYEGEEACDEGCNGGLQPNAYNY-IIKNGGIQTESSYPYTAETGTQCNFNSA
:: : . .: . ..: :.:. . .:: . . : . ... : .. :
gi|178 VDYDSTSPLPIAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRV--QLYIKLA
120 130 140 150 160
230 240 250 260 270 280
CYS1_D NIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDI---PCNPN-SLD
. . :... ..: .: . . .: :: .: . : : :. .: : : .:.
gi|178 KNANKVNKKLVLP-DEYIALEFKGMSGAGAIEVDK-NLTFRIRGLNNIHVLDCFVNVDLE
170 180 190 200 210 220
290 300 310 320 330 340
CYS1_D HGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII
. .: .. :. ::
gi|178 PADGVVDFGKINSRTIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLD
230 240 250 260 270 280
343 residues in 1 query sequences
1358987 residues in 4289 library sequences
Scomplib [33t08]
start: Sat Dec 8 11:43:36 2001 done: Sat Dec 8 11:43:37 2001
Scan time: 1.110 Display time: 0.090
Function used was FASTA [version 3.3t08 Jan. 17, 2001]
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