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FASTA searches a protein or DNA sequence data bank
version 3.3t08 Jan. 17, 2001
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
t/data/cysprot1.fa: 343 aa
>CYS1_DICDI
vs /data_2/jason/blastdb/ecoli.aa library
searching /data_2/jason/blastdb/ecoli.aa library
opt E()
< 20 0 0:
22 0 0: one = represents 7 library sequences
24 0 0:
26 0 0:
28 0 1:*
30 4 6:*
32 13 23:== *
34 62 62:========*
36 130 127:==================*
38 252 210:=============================*======
40 310 293:=========================================*===
42 405 359:===================================================*======
44 401 396:========================================================*=
46 386 403:======================================================== *
48 348 386:================================================== *
50 360 352:==================================================*=
52 290 309:========================================== *
54 264 264:=====================================*
56 215 221:===============================*
58 145 181:===================== *
60 144 147:====================*
62 119 118:================*
64 96 94:=============*
66 72 74:==========*
68 65 58:========*=
70 54 46:======*=
72 30 36:=====*
74 19 28:===*
76 26 22:===*
78 18 17:==*
80 19 13:=*=
82 14 10:=*
84 8 8:=*
86 4 6:*
88 2 5:* inset = represents 1 library sequences
90 4 4:*
92 3 3:* :==*
94 2 2:* :=*
96 1 2:* :=*
98 1 1:* :*
100 0 1:* :*
102 0 1:* :*
104 2 1:* :*=
106 0 0: *
108 1 0:= *=
110 0 0: *
112 0 0: *
114 0 0: *
116 0 0: *
118 0 0: *
>120 0 0: *
1358987 residues in 4289 sequences
Expectation_n fit: rho(ln(x))= 5.9493+/-0.00202; mu= 2.7408+/- 0.115
mean_var=77.5610+/-17.011, 0's: 0 Z-trim: 0 B-trim: 2 in 1/41
Lambda= 0.1456
Kolmogorov-Smirnov statistic: 0.0234 (N=29) at 44
FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, gap-pen: -12/ -2, width: 16
Scan time: 1.110
The best scores are: opt bits E(4289)
gi|1787478|gb|AAC74309.1| (AE000221) nitrate redu ( 512) 92 29 1.2
gi|1790635|gb|AAC77148.1| (AE000491) putative DEO ( 251) 84 27 2.1
gi|1786590|gb|AAC73494.1| (AE000145) orf, hypothe ( 94) 78 26 2.1
gi|1790853|gb|AAC77345.1| (AE000509) soluble lyti ( 654) 84 28 4.8
gi|1789307|gb|AAC75975.1| (AE000377) biosynthetic ( 658) 83 27 5.6
gi|1788174|gb|AAC74937.1| (AE000280) orf, hypothe ( 199) 74 25 7.4
gi|1789138|gb|AAC75818.1| (AE000361) putative kin ( 492) 79 26 7.8
gi|1789427|gb|AAC76084.1| (AE000386) orf, hypothe ( 354) 76 26 9.1
>>gi|1787478|gb|AAC74309.1| (AE000221) nitrate reductase (512 aa)
initn: 35 init1: 35 opt: 92 Z-score: 109.2 bits: 29.2 E(): 1.2
Smith-Waterman score: 92; 23.936% identity (26.012% ungapped) in 188 aa overlap (125-305:2-181)
100 110 120 130 140 150
CYS1_D NKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTT-GNV--
. :. : : : .: .: . :.: ::
gi|178 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWT
10 20 30
160 170 180 190 200
CYS1_D --EGQHFISQNKLVSLSEQNLVDCDHECME-YEGEEACDEGCNGGLQPNAYNYIIKNGGI
:: .. :.. . :.. : : .: :.: . :: ::: : . : :
gi|178 SREGVEYAWFNNVETKPGQGF-PTDWENQEKYKGGWI--RKINGKLQPRMGNRAMLLGKI
40 50 60 70 80
210 220 230 240 250 260
CYS1_D QTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGP-LAIAADAVEW
.. : . .:. :. . . :.. . . :: .: . .:
gi|178 FANPHLPGIDDYYEPFDFDYQNLHTAPEG----SKSQPIARPRSLITGERMAKIEKGPNW
90 100 110 120 130 140
270 280 290 300 310 320
CYS1_D QFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRR
. .:: :: . ...:. : . :: .. : .:
gi|178 EDDLGGEFDKLAKDKNFDN-IQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYK
150 160 170 180 190 200
330 340
CYS1_D GKNTCGVSNFVSTSII
gi|178 REEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETC
210 220 230 240 250 260
>>gi|1790635|gb|AAC77148.1| (AE000491) putative DEOR-typ (251 aa)
initn: 46 init1: 46 opt: 84 Z-score: 104.9 bits: 27.4 E(): 2.1
Smith-Waterman score: 84; 22.078% identity (23.288% ungapped) in 77 aa overlap (99-171:119-195)
70 80 90 100 110 120
CYS1_D HKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRG
:.:. ::.:.:: :. .:. ...
gi|179 QLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKS
90 100 110 120 130 140
130 140 150 160 170 180
CYS1_D AVTPVKNQGQCGSC----WSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEE
.. ::. .: : :.. .. .. . . . :....::....
gi|179 QSITLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSS
150 160 170 180 190 200
190 200 210 220 230 240
CYS1_D ACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKN
gi|179 KIGERAGMLFSRADQIDMLITGKNANPEILQQLEAQGVSILRV
210 220 230 240 250
>>gi|1786590|gb|AAC73494.1| (AE000145) orf, hypothetical (94 aa)
initn: 37 init1: 37 opt: 78 Z-score: 104.8 bits: 25.9 E(): 2.1
Smith-Waterman score: 78; 36.842% identity (43.750% ungapped) in 38 aa overlap (242-278:42-74)
220 230 240 250 260 270
CYS1_D SSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFY-
:.. ::..: . : ::..:: :
gi|178 VKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLP-----DATDWQVYE
20 30 40 50 60
280 290 300 310 320 330
CYS1_D IGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKN
:.::..:
gi|178 AGSVFNVPGHSEFHLQVAEPTSYLCRYL
70 80 90
>>gi|1790853|gb|AAC77345.1| (AE000509) soluble lytic mur (654 aa)
initn: 61 init1: 61 opt: 84 Z-score: 98.5 bits: 27.6 E(): 4.8
Smith-Waterman score: 84; 32.692% identity (34.694% ungapped) in 52 aa overlap (104-152:104-155)
80 90 100 110 120 130
CYS1_D KFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPV
:: : :...:.: . ::: : .:
gi|179 YPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE
80 90 100 110 120 130
140 150 160 170 180 190
CYS1_D K---NQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEGC
: ...::. .. .::. :
gi|179 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY
140 150 160 170 180 190
>>gi|1789307|gb|AAC75975.1| (AE000377) biosynthetic argi (658 aa)
initn: 41 init1: 41 opt: 83 Z-score: 97.3 bits: 27.4 E(): 5.6
Smith-Waterman score: 83; 23.913% identity (24.176% ungapped) in 92 aa overlap (178-268:315-406)
150 160 170 180 190 200
CYS1_D TGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEA-CDEGCNGGLQPNAYNYIIKNG
..::: .. : . : ::. : : : :
gi|178 TGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIG
290 300 310 320 330 340
210 220 230 240 250 260
CYS1_D GIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVE
:.. :. . . .:. . .::. . .:: .. . .: :. .
gi|178 DACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWET
350 360 370 380 390 400
270 280 290 300 310 320
CYS1_D WQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLR
::
gi|178 WQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQLYLSMCHEVQKQLD
410 420 430 440 450 460
>>gi|1788174|gb|AAC74937.1| (AE000280) orf, hypothetical (199 aa)
initn: 46 init1: 46 opt: 74 Z-score: 95.2 bits: 25.2 E(): 7.4
Smith-Waterman score: 74; 43.750% identity (50.000% ungapped) in 32 aa overlap (308-335:110-141)
280 290 300 310 320 330
CYS1_D PCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRR-GKNT---CG
:.: .::: .: . . ::: : .: ::
gi|178 PVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCG
80 90 100 110 120 130
340
CYS1_D VSNFVSTSII
.:.
gi|178 ISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL
140 150 160 170 180 190
>>gi|1789138|gb|AAC75818.1| (AE000361) putative kinase [ (492 aa)
initn: 36 init1: 36 opt: 79 Z-score: 94.7 bits: 26.5 E(): 7.8
Smith-Waterman score: 84; 19.136% identity (21.233% ungapped) in 162 aa overlap (34-192:165-313)
10 20 30 40 50 60
CYS1_D ILLFVLAVFTVFVSSRGIPPEEQSQFLEFQDKFNKKYSHEEYLERFEIFKSNLGKIEELN
:::: ...: .. . ::.:
gi|178 GEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIP---RHMLFDVQMPGTVLGHITPQA
140 150 160 170 180 190
70 80 90 100 110 120
CYS1_D LIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFD
.: . : : .: . . :... :... .: ... . . . :.:.
gi|178 ALATHFPAGLPV-VCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAY-
200 210 220 230 240
130 140 150 160 170 180
CYS1_D WRTRGAVTPV---KNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEY
: ... . .. : . :. : .. :. .:.. . .:: ..:.. :.
gi|178 WPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVP-
250 260 270 280 290 300
190 200 210 220 230 240
CYS1_D EGEEACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTM
::::
gi|178 -------PGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNY
310 320 330 340 350 360
>>gi|1789427|gb|AAC76084.1| (AE000386) orf, hypothetical (354 aa)
initn: 65 init1: 40 opt: 76 Z-score: 93.5 bits: 25.8 E(): 9.1
Smith-Waterman score: 76; 22.619% identity (23.899% ungapped) in 168 aa overlap (141-303:81-244)
120 130 140 150 160 170
CYS1_D DDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNL
: :. . :: : .::. . :
gi|178 GDKIWQSSEYFMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNG
60 70 80 90 100 110
180 190 200 210 220
CYS1_D VDCDHECMEYEGEEACDEGCNGGLQPNAYNY-IIKNGGIQTESSYPYTAETGTQCNFNSA
:: : . .: . ..: :.:. . .:: . . : . ... : .. :
gi|178 VDYDSTSPLPIAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRV--QLYIKLA
120 130 140 150 160
230 240 250 260 270 280
CYS1_D NIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDI---PCNPN-SLD
. . :... ..: .: . . .: :: .: . : : :. .: : : .:.
gi|178 KNANKVNKKLVLP-DEYIALEFKGMSGAGAIEVDK-NLTFRIRGLNNIHVLDCFVNVDLE
170 180 190 200 210 220
290 300 310 320 330 340
CYS1_D HGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII
. .: .. :. ::
gi|178 PADGVVDFGKINSRTIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLD
230 240 250 260 270 280
343 residues in 1 query sequences
1358987 residues in 4289 library sequences
Scomplib [33t08]
start: Sat Dec 8 11:43:36 2001 done: Sat Dec 8 11:43:37 2001
Scan time: 1.110 Display time: 0.090
Function used was FASTA [version 3.3t08 Jan. 17, 2001]
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