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# ./ssearch36 -E 0.001 -q -n -z 11 A3_target.fa Ready_sorted.fa
SSEARCH performs a Smith-Waterman search
version 36.3.8f May, 2017
Please cite:
T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197;
W.R. Pearson (1991) Genomics 11:635-650
Query: A3_target.fa
1>>>A3_100bp_start38 refined - 100 nt
Library: Ready_sorted.fa
150 residues in 1 sequences
Statistics: (shuffled [500]) MLE statistics: Lambda= 0.1633; K=0.1625
statistics sampled from 1 (1) to 500 sequences
Algorithm: Smith-Waterman (SSE2, Michael Farrar 2006) (7.2 Nov 2010)
Parameters: +5/-4 matrix (5:-4), open/ext: -12/-4
Scan time: 0.020
The best scores are: s-w bits E(1)
17271.26 ( 150) [f] 345 83.9 8.2e-22
>>17271.26 (150 nt)
s-w opt: 345 Z-score: 424.1 bits: 83.9 E(1): 8.2e-22
Smith-Waterman score: 345; 100.0% identity (100.0% similar) in 69 nt overlap (1-69:82-150)
10 20 30
A3_100 AGAATTTGGAATTCCCTACAATCCCCAAAG
::::::::::::::::::::::::::::::
17271. CCTAGAATTTGGAATTCCCTACAATCCCCTAGAATTTGGAATTCCCTACAATCCCCAAAG
60 70 80 90 100 110
40 50 60 70 80 90
A3_100 TCAAGGAGTAGTGGAGTCTATGAATAAGGAATTAAAGAAAATTATAGGGCAGGTAAGAGA
:::::::::::::::::::::::::::::::::::::::
17271. TCAAGGAGTAGTGGAGTCTATGAATAAGGAATTAAAGAA
120 130 140 150
100
A3_100 GCAAGCTGAA
>--
s-w opt: 131 Z-score: 151.5 bits: 33.5 E(1): 1.2e-06
Smith-Waterman score: 131; 96.4% identity (96.4% similar) in 28 nt overlap (1-28:1-28)
10 20 30 40 50 60
A3_100 AGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAGTCTATGAATAAGGA
:::::::::::::::::::::::::: :
17271. AGAATTTGGAATTCCCTACAATCCCCTAGAATTTGGAATTCCCTACAATCCCCTAGAATT
10 20 30 40 50 60
>--
s-w opt: 130 Z-score: 150.3 bits: 33.3 E(1): 1.5e-06
Smith-Waterman score: 130; 100.0% identity (100.0% similar) in 26 nt overlap (1-26:55-80)
10 20 30
A3_100 AGAATTTGGAATTCCCTACAATCCCCAAAG
::::::::::::::::::::::::::
17271. CCTAGAATTTGGAATTCCCTACAATCCCCTAGAATTTGGAATTCCCTACAATCCCCTAGA
30 40 50 60 70 80
40 50 60 70 80 90
A3_100 TCAAGGAGTAGTGGAGTCTATGAATAAGGAATTAAAGAAAATTATAGGGCAGGTAAGAGA
17271. ATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAGTCTATGAATAAGGAATT
90 100 110 120 130 140
100 residues in 1 query sequences
150 residues in 1 library sequences
Tcomplib [36.3.8f May, 2017] (12 proc in memory [0G])
start: Fri Nov 24 22:53:09 2017 done: Fri Nov 24 22:53:09 2017
Total Scan time: 0.020 Total Display time: 0.000
Function used was SSEARCH [36.3.8f May, 2017]
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