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MEGABLAST 1.4.13-Paracel [2002-12-12]
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences",
J Comput Biol 2000; 7(1-2):203-14.
Database: bwb/tmp/vISbyVPvvB
2 sequences; 80 total letters
Searching. done
Query= DNA sequence #1
(40 letters)
Score E
Sequences producing significant alignments: (bits) Value
reverse-complement of sequence #1 74 1e-19
DNA sequence #1 74 1e-19
>reverse-complement of sequence #1
Length = 40
Score = 73.8 bits (37), Expect = 1e-19
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 2 ccccccccccccccccccccccccccccccccccccc 38
|||||||||||||||||||||||||||||||||||||
Sbjct: 40 ccccccccccccccccccccccccccccccccccccc 4
Score = 67.9 bits (34), Expect = 8e-18
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1 cccccccccccccccccccccccccccccccccc 34
||||||||||||||||||||||||||||||||||
Sbjct: 36 cccccccccccccccccccccccccccccccccc 3
>DNA sequence #1
Length = 40
Score = 73.8 bits (37), Expect = 1e-19
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 2 ccccccccccccccccccccccccccccccccccccc 38
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccccccccccccccccccccccccccccccccccc 37
Score = 71.9 bits (36), Expect = 5e-19
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 cccccccccccccccccccccccccccccccccccc 36
||||||||||||||||||||||||||||||||||||
Sbjct: 3 cccccccccccccccccccccccccccccccccccc 38
Searching. done
Query= reverse-complement of sequence #1
(40 letters)
Score E
Sequences producing significant alignments: (bits) Value
reverse-complement of sequence #1 74 1e-19
DNA sequence #1 74 1e-19
>reverse-complement of sequence #1
Length = 40
Score = 73.8 bits (37), Expect = 1e-19
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 3 ggggggggggggggggggggggggggggggggggggg 39
|||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggggggggggggggggggggggggggggggggggggg 40
Score = 67.9 bits (34), Expect = 8e-18
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 7 gggggggggggggggggggggggggggggggggg 40
||||||||||||||||||||||||||||||||||
Sbjct: 3 gggggggggggggggggggggggggggggggggg 36
>DNA sequence #1
Length = 40
Score = 73.8 bits (37), Expect = 1e-19
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 3 ggggggggggggggggggggggggggggggggggggg 39
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 ggggggggggggggggggggggggggggggggggggg 1
Score = 71.9 bits (36), Expect = 5e-19
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 5 gggggggggggggggggggggggggggggggggggg 40
||||||||||||||||||||||||||||||||||||
Sbjct: 38 gggggggggggggggggggggggggggggggggggg 3
Database: bwb/tmp/vISbyVPvvB
Posted date: Jan 23, 2003 9:25 AM
Number of letters in database: 80
Number of sequences in database: 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 0, Extension: 0
Number of Hits to DB: 0
Number of Sequences: 2
length of database: 80
effective search space used: 0
S2: 4 ( 8.4 bits)
|
