File: roa1.gbxml

package info (click to toggle)
bioperl 1.7.8-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, trixie
  • size: 35,788 kB
  • sloc: perl: 94,019; xml: 14,811; makefile: 20
file content (208 lines) | stat: -rw-r--r-- 9,084 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
<?xml version="1.0"?>
<!DOCTYPE Bioseq-set PUBLIC "-//NCBI//NCBI Seqset/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_Seqset.dtd">
<Bioseq-set>
<Bioseq-set_seq-set>
<Seq-entry>
  <Seq-entry_seq>
    <Bioseq>
      <Bioseq_id>
        <Seq-id>
          <Seq-id_general>
            <Dbtag>
              <Dbtag_db>dbEST</Dbtag_db>
              <Dbtag_tag>
                <Object-id>
                  <Object-id_id>1888424</Object-id_id>
                </Object-id>
              </Dbtag_tag>
            </Dbtag>
          </Seq-id_general>
        </Seq-id>
        <Seq-id>
          <Seq-id_genbank>
            <Textseq-id>
              <Textseq-id_accession>AI129902</Textseq-id_accession>
              <Textseq-id_version>1</Textseq-id_version>
            </Textseq-id>
          </Seq-id_genbank>
        </Seq-id>
        <Seq-id>
          <Seq-id_gi>3598416</Seq-id_gi>
        </Seq-id>
      </Bioseq_id>
      <Bioseq_descr>
        <Seq-descr>
          <Seqdesc>
            <Seqdesc_molinfo>
              <MolInfo>
                <MolInfo_biomol value="mRNA">3</MolInfo_biomol>
                <MolInfo_tech value="est">2</MolInfo_tech>
              </MolInfo>
            </Seqdesc_molinfo>
          </Seqdesc>
          <Seqdesc>
            <Seqdesc_title>qc41b07.x1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone IMAGE:1712149 3&apos; similar to SW:ROA1_SCHAM P21522 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1, A2/B1 HOMOLOG. ;contains MSR1.b2 MSR1 repetitive element ;.</Seqdesc_title>
          </Seqdesc>
          <Seqdesc>
            <Seqdesc_create-date>
              <Date>
                <Date_std>
                  <Date-std>
                    <Date-std_year>1998</Date-std_year>
                    <Date-std_month>9</Date-std_month>
                    <Date-std_day>10</Date-std_day>
                  </Date-std>
                </Date_std>
              </Date>
            </Seqdesc_create-date>
          </Seqdesc>
          <Seqdesc>
            <Seqdesc_update-date>
              <Date>
                <Date_std>
                  <Date-std>
                    <Date-std_year>1998</Date-std_year>
                    <Date-std_month>10</Date-std_month>
                    <Date-std_day>27</Date-std_day>
                  </Date-std>
                </Date_std>
              </Date>
            </Seqdesc_update-date>
          </Seqdesc>
          <Seqdesc>
            <Seqdesc_comment>Contact: Robert Strausberg, Ph.D.~Email: cgapbs-r@mail.nih.gov~This clone is available royalty-free through LLNL ; contact the IMAGE Consortium (info@image.llnl.gov) for further information. ~Trace considered overall poor quality~Insert Length: 525   Std Error: 0.00~Seq primer: -40m13 fwd. ET from Amersham~High quality sequence stop: 1</Seqdesc_comment>
          </Seqdesc>
          <Seqdesc>
            <Seqdesc_source>
              <BioSource>
                <BioSource_org>
                  <Org-ref>
                    <Org-ref_taxname>Homo sapiens</Org-ref_taxname>
                    <Org-ref_common>human</Org-ref_common>
                    <Org-ref_db>
                      <Dbtag>
                        <Dbtag_db>taxon</Dbtag_db>
                        <Dbtag_tag>
                          <Object-id>
                            <Object-id_id>9606</Object-id_id>
                          </Object-id>
                        </Dbtag_tag>
                      </Dbtag>
                    </Org-ref_db>
                    <Org-ref_orgname>
                      <OrgName>
                        <OrgName_name>
                          <OrgName_name_binomial>
                            <BinomialOrgName>
                              <BinomialOrgName_genus>Homo</BinomialOrgName_genus>
                              <BinomialOrgName_species>sapiens</BinomialOrgName_species>
                            </BinomialOrgName>
                          </OrgName_name_binomial>
                        </OrgName_name>
                        <OrgName_mod>
                          <OrgMod>
                            <OrgMod_subtype value="other">255</OrgMod_subtype>
                            <OrgMod_subname>Organ: uterus; Vector: pT7T3D-PacI; Site_1: Not I; Site_2: Eco RI; 1st strand cDNA was primed with a Not I - oligo(dT) primer [5&apos; AACTGGAAGAATTCGCGGCCGCCTTTTTTTTTTTTTTTTTT 3&apos;], double-stranded cDNA was ligated to Eco RI adaptors (Pharmacia), digested with Not I and cloned into the Not I and Eco RI sites of the modified pT7T3 vector. Library went through one round of normalization.  Library constructed by M. Fatima Bonaldo.</OrgMod_subname>
                          </OrgMod>
                        </OrgName_mod>
                        <OrgName_lineage>Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo</OrgName_lineage>
                        <OrgName_gcode>1</OrgName_gcode>
                        <OrgName_mgcode>2</OrgName_mgcode>
                        <OrgName_div>PRI</OrgName_div>
                      </OrgName>
                    </Org-ref_orgname>
                  </Org-ref>
                </BioSource_org>
                <BioSource_subtype>
                  <SubSource>
                    <SubSource_subtype value="clone">3</SubSource_subtype>
                    <SubSource_name>IMAGE:1712149</SubSource_name>
                  </SubSource>
                  <SubSource>
                    <SubSource_subtype value="clone-lib">11</SubSource_subtype>
                    <SubSource_name>Soares_pregnant_uterus_NbHPU</SubSource_name>
                  </SubSource>
                  <SubSource>
                    <SubSource_subtype value="sex">7</SubSource_subtype>
                    <SubSource_name>female</SubSource_name>
                  </SubSource>
                  <SubSource>
                    <SubSource_subtype value="dev-stage">12</SubSource_subtype>
                    <SubSource_name>adult</SubSource_name>
                  </SubSource>
                  <SubSource>
                    <SubSource_subtype value="lab-host">16</SubSource_subtype>
                    <SubSource_name>DH10B</SubSource_name>
                  </SubSource>
                </BioSource_subtype>
              </BioSource>
            </Seqdesc_source>
          </Seqdesc>
          <Seqdesc>
            <Seqdesc_pub>
              <Pubdesc>
                <Pubdesc_pub>
                  <Pub-equiv>
                    <Pub>
                      <Pub_gen>
                        <Cit-gen>
                          <Cit-gen_cit>Unpublished</Cit-gen_cit>
                          <Cit-gen_authors>
                            <Auth-list>
                              <Auth-list_names>
                                <Auth-list_names_std>
                                  <Author>
                                    <Author_name>
                                      <Person-id>
                                        <Person-id_name>
                                          <Name-std>
                                            <Name-std_last>NCI-CGAP http://www.ncbi.nlm.nih.gov/ncicgap</Name-std_last>
                                          </Name-std>
                                        </Person-id_name>
                                      </Person-id>
                                    </Author_name>
                                  </Author>
                                </Auth-list_names_std>
                              </Auth-list_names>
                            </Auth-list>
                          </Cit-gen_authors>
                          <Cit-gen_date>
                            <Date>
                              <Date_std>
                                <Date-std>
                                  <Date-std_year>1997</Date-std_year>
                                </Date-std>
                              </Date_std>
                            </Date>
                          </Cit-gen_date>
                          <Cit-gen_title>National Cancer Institute, Cancer Genome Anatomy Project (CGAP), Tumor Gene Index</Cit-gen_title>
                        </Cit-gen>
                      </Pub_gen>
                    </Pub>
                  </Pub-equiv>
                </Pubdesc_pub>
              </Pubdesc>
            </Seqdesc_pub>
          </Seqdesc>
        </Seq-descr>
      </Bioseq_descr>
      <Bioseq_inst>
        <Seq-inst>
          <Seq-inst_repr value="raw"/>
          <Seq-inst_mol value="rna"/>
          <Seq-inst_length>37</Seq-inst_length>
          <Seq-inst_strand value="ss"/>
          <Seq-inst_seq-data>
            <Seq-data>
              <Seq-data_iupacna>
                <IUPACna>CTCCGCGCCAACTCCCCCCACCCCCCCCCCACACCCC</IUPACna>
              </Seq-data_iupacna>
            </Seq-data>
          </Seq-inst_seq-data>
        </Seq-inst>
      </Bioseq_inst>
    </Bioseq>
  </Seq-entry_seq>
</Seq-entry>
</Bioseq-set_seq-set>
</Bioseq-set>