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RPS-BLAST 2.2.18 [Mar-02-2008]
Database: CDD.v.2.12
24,291 sequences; 6,026,850 total letters
Searching..................................................done
Query= orf10
(129 letters)
***** No hits found ******
Query= orf20
(765 letters)
Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|82074 PRK07003, PRK07003, DNA polymerase III subunits ga... 41 0.001
>gnl|CDD|82074 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau.
Length = 825
Score = 41.0 bits (95), Expect = 0.001
Identities = 51/212 (24%), Positives = 65/212 (30%)
Query: 101 GTGTTTCAGAAGATATAATAAAAAAAATAGAAAAAAAAAATTGGAAACTAATAGCAATTT 160
G GA+ A A AA AAAA AA A AA ATA +
Sbjct: 384 GARAAAAVGASAVPAVTGATGATGAALAPKAAAARAATRAEAPPAAPARPATAERGDDAS 443
Query: 161 TATTAACTCATAATCATATTGATCATGTAGGAGGAGTAGAAGAAATTATAAGAAGATATC 220
A A A + A A +G A +A +A AA +A
Sbjct: 444 DGDAPVPAKANARASADSRCDERDAQPPADSGSASGAASSAPPDTAFESAPRAAAPSAAT 503
Query: 221 CAAACGTAACTGTTTTTGGTCCTGAAGAAACAAAAACAAGAAATGTAAATAAAATTGTAA 280
AA A + AA + AA A + ATG AAA G
Sbjct: 504 PAAVPDARAPAAASAEDAVEAAAPAAPESRPPTPAAGAPVSRATGAAAALDVLRNAGMRV 563
Query: 281 AACAAGGAGATGTAATAAAATTGTTAAAAAGT 312
++ GA A+ A + T
Sbjct: 564 SSGRGAGAARPAAGPAASPTKPAPRAQVSVPT 595
Query= orf30
(225 letters)
***** No hits found ******
Query= orf40
(858 letters)
Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|33678 COG3889, COG3889, Predicted solute binding protein... 47 2e-05
>gnl|CDD|33678 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 47.3 bits (112), Expect = 2e-05
Identities = 33/147 (22%), Positives = 48/147 (32%), Gaps = 3/147 (2%)
Query: 505 TTGGGTGTTTTTATTTTAATTTTATTTTATAGTGTAAAGATGAAGGGATTAATTGGTTTT 564
G T + A TT G TT+ T
Sbjct: 721 VKIGQALTVYGSLEVFPAGENWGFIPTTK--RVKVRIMDPASGTGTSITTSGTFTAEVPQ 778
Query: 565 TGTAAAGAACTTACTTTACAACCTTTTAATCATCCTGTATTTTTTATTTTTAATTTTTTA 624
+ T +A + T+ TT+ T T T T++ + TT+ T+T+TT
Sbjct: 779 SPTKTETTLSYSAYSNTSILIE-TTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTT 837
Query: 625 TTAGAATTAGTTTCTTTATTATCAAAA 651
TT+ + TT G C AA A
Sbjct: 838 TTSPSQTTTGGGICGPIVIIVGLAALA 864
Score = 45.4 bits (107), Expect = 5e-05
Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 5/134 (3%)
Query: 522 AATTTTATTTTATAGTGTAAAGATGAAGGGATTAATTGGTTTTTGTAAAGAACTTACTTT 581
A T + AG T A+ GT+ TT T +
Sbjct: 725 QALTVYGSLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSITTSGTF-----TAEVPQS 779
Query: 582 ACAACCTTTTAATCATCCTGTATTTTTTATTTTTAATTTTTTATTAGAATTAGTTTCTTT 641
T + +A T T+ T T T T TT++ + T + T T+T TTT
Sbjct: 780 PTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTT 839
Query: 642 ATTATCAAAACCAA 655
+ + T C
Sbjct: 840 SPSQTTTGGGICGP 853
Score = 45.0 bits (106), Expect = 8e-05
Identities = 28/132 (21%), Positives = 41/132 (31%)
Query: 105 AGATTTATGTAATTTTAAGTTTGTTGAACCAGGAAAAATTGTTTCTCATTTTTGGGTTTT 164
G T G+ T A+ TGT+ T T T + T
Sbjct: 723 IGQALTVYGSLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFTAEVPQSPTK 782
Query: 165 AAATATTGATTCAATCATATTTTCTCTTGTATTAGGATGTTTTTTTTTGAGCATCTTTTA 224
T + A + + T+ T T T + T TT+ T + T TT+ +
Sbjct: 783 TETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPS 842
Query: 225 CACAGTGGCAAA 236
G G C
Sbjct: 843 QTTTGGGICGPI 854
Score = 42.3 bits (99), Expect = 4e-04
Identities = 26/96 (27%), Positives = 39/96 (40%)
Query: 368 TTGTTTGGGTTTTTTTAATGAATCTTATGGATTTAATTCCAATTGATTTTTTTCCATTTA 427
+GT T T+ T T + T T T + + T+ TT T T T TTT+
Sbjct: 759 ASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTS 818
Query: 428 TTTCTGAGAGGTTTTTTCATTTTCCAGCAATGCGTA 463
+ + T + T+T+T TT+ CG
Sbjct: 819 SPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGPI 854
Query= orf50
(189 letters)
***** No hits found ******
Query= orf60
(387 letters)
***** No hits found ******
Query= orf70
(600 letters)
***** No hits found ******
Query= orf80
(270 letters)
***** No hits found ******
Query= orf90
(987 letters)
***** No hits found ******
Query= orf100
(624 letters)
***** No hits found ******
Query= orf110
(435 letters)
***** No hits found ******
Database: CDD.v.2.12
Posted date: Aug 13, 2008 12:02 PM
Number of letters in database: 6,026,850
Number of sequences in database: 24,291
Lambda K H
0.320 0.134 0.503
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24291
Number of Hits to DB: 98,336,059
Number of extensions: 7540086
Number of successful extensions: 79485
Number of sequences better than 1.0e-03: 11
Number of HSP's gapped: 59896
Number of HSP's successfully gapped: 1457
Length of database: 6,026,850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 86 (37.2 bits)
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