File: test-4.9.meme

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********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 4.9.0 (Release date: Wed Oct  3 11:07:26 EST 2012)

For further information on how to interpret these results or to get
a copy of the MEME software please access http://meme.nbcr.net.

This file may be used as input to the MAST algorithm for searching
sequence databases for matches to groups of motifs.  MAST is available
for interactive use and downloading at http://meme.nbcr.net.
********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
DATAFILE= multibasic-uniq.fa
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
A/chicken/Bangladesh/830 1.0000     21  A/chicken/Egypt/39825/20 1.0000     21  
A/ck/Indonesia/072/10    1.0000     21  A/duck/Bangladesh/5749/1 1.0000     21  
A/mallard/Crimea/245/200 1.0000     21  A/environment/Bangladesh 1.0000     21  
A/chicken/Egypt/111945V/ 1.0000     21  A/avian/New_York/Sg00372 1.0000     21  
A/chicken/Egypt/1117AF/2 1.0000     21  A/wild_bird_feces/Cheons 1.0000     21  
A/chicken/India/241272/2 1.0000     21  A/duck/Jiangxi/80/2005   1.0000     21  
A/chicken/Inhu/BPPVRII/2 1.0000     21  A/duck/Guangxi/668/2004  1.0000     21  
A/whooper_swan/Hokkaido/ 1.0000     21  A/duck/Vietnam/1/2010    1.0000     21  
A/avian/New_York/Sg00387 1.0000     21  A/chicken/Cambodia/LC/20 1.0000     21  
A/mallard/Maryland/786/2 1.0000     21  A/chicken/Egypt/128s/201 1.0000     21  
A/guinea_fowl/Yangon/834 1.0000     21  A/chicken/WestJava/SmiAc 1.0000     21  
A/Indonesia/625/2006     1.0000     21  A/Egypt/N07460/2012      1.0000     21  
A/duck/Victoria/26/1981| 1.0000     21  A/duck/Viet_Nam/TG2401/2 1.0000     21  
A/chicken/Egypt/398252/2 1.0000     21  A/environment/Maryland/1 1.0000     21  
A/duck/New_Zealand/41/19 1.0000     21  A/heron/Cambodia/TM068/2 1.0000     21  
A/chicken/Egypt/10117/20 1.0000     21  A/VietNam/HN31413/2008   1.0000     21  
A/chicken/Egypt/398214/2 1.0000     21  A/chicken/Egypt/39823/20 1.0000     21  
A/chicken/Belgium/150VB/ 1.0000     21  A/goose/Fujian/bb/2003   1.0000     21  
A/Vietnam/UT30259/2004   1.0000     21  A/duck/Yunnan/47/2006    1.0000     21  
A/chicken/Egypt/10259SF/ 1.0000     21  A/bird/Turkey/Unye_ist06 1.0000     21  
A/chicken/Bangladesh/11r 1.0000     21  A/chicken/Vietnam/NCVD19 1.0000     21  
A/swan/England/AV3142149 1.0000     21  A/chicken/Ibaraki/17/200 1.0000     21  
A/chicken/Nepal/354/2010 1.0000     21  A/duck/Vietnam/NCVD366/2 1.0000     21  
A/duck/Korea/GJ54/2004|G 1.0000     21  A/muscovy_duck/Vietnam/L 1.0000     21  
A/duck/Egypt/1130AG/2011 1.0000     21  A/ck/Indonesia/091/10    1.0000     21  
A/duck/Vietnam/9/2010    1.0000     21  A/duck/Hokkaido/Vac3/200 1.0000     21  
A/Thailand/WRAIR1720H/20 1.0000     21  A/chicken/Cambodia/022LC 1.0000     21  
A/spurwinged_goose/Niger 1.0000     21  A/pigeon/Egypt/SHAH5803/ 1.0000     21  
A/whooper_swan/Mongolia/ 1.0000     21  A/chicken/Shan/2626/2007 1.0000     21  
A/chicken/Italy/367/97|A 1.0000     21  A/turkey/Italy/1325/2005 1.0000     21  
A/chicken/Egypt/1158SF/2 1.0000     21  A/chicken/Egypt/398220/2 1.0000     21  
A/condor/Guangdong/139/2 1.0000     21  A/chicken/Shandong/A1/20 1.0000     21  
A/chicken/Egypt/11764s/2 1.0000     21  A/swine/NorthSumatra/UT6 1.0000     21  
A/o.bill_stork/Thailand/ 1.0000     21  A/chicken/Texas/2983132/ 1.0000     21  
A/chicken/Bangladesh/11V 1.0000     21  A/chicken/Ibaraki/15/200 1.0000     21  
A/chicken/Shandong/A10/2 1.0000     21  A/duck/Vietnam/OIE1287/2 1.0000     21  
A/duck/Vietnam/NCVD1161/ 1.0000     21  A/duck/Ireland/113/1983| 1.0000     21  
A/chicken/EastKalimantan 1.0000     21  A/duck/Vietnam/3/2010    1.0000     21  
A/Muscovy_duck/Ca_Mau/11 1.0000     21  A/chicken/Turkey/Misinli 1.0000     21  
A/chicken/Italy/9097/199 1.0000     21  A/mallard/Washington/456 1.0000     21  
A/duck/Iran/11VIR53161/2 1.0000     21  A/Muscovy_Duck/Vietnam/1 1.0000     21  
A/duck/Hunan/149/2005    1.0000     21  A/Egypt/4822NAMRU3/2009  1.0000     21  
A/duck/Vietnam/NCVD1463/ 1.0000     21  A/poultry/Egypt/398256/2 1.0000     21  
A/turkey/Italy/1980|GQ24 1.0000     21  A/goose/Bangladesh/11VIR 1.0000     21  
A/mallard/Washington/454 1.0000     21  A/chicken/Cambodia/013LC 1.0000     21  
A/chicken/Banten/PdglKas 1.0000     21  A/chicken/Vietnam/NCVD03 1.0000     21  
A/wigeon/Ohio/379/1988|C 1.0000     21  A/chicken/Magelang/BBVW6 1.0000     21  
A/chicken/Lampung/BPPVRI 1.0000     21  A/chick/Pennsylvania/1/1 1.0000     21  
A/chicken/Liaoning/A1/20 1.0000     21  A/wild_bird_feces/Cheons 1.0000     21  
A/chicken/Sikkim/151466/ 1.0000     21  A/environment/ChangSha/2 1.0000     21  
A/chicken/CentralJava/UT 1.0000     21  A/Vietnam/HN36250/2010   1.0000     21  
A/chicken/Guiyang/821/20 1.0000     21  A/owstons_civet/VietNam/ 1.0000     21  
A/chicken/Bangladesh/11r 1.0000     21  A/environment/New_York/1 1.0000     21  
A/domestic_goose/Hong_Ko 1.0000     21  A/Hubei/1/2010           1.0000     21  
A/Hunan/1/2009           1.0000     21  A/chicken/Egypt/1123AL/2 1.0000     21  
A/wood_duck/MD/04623/200 1.0000     21  A/chicken/Shanxi/2/2006  1.0000     21  
A/quail/Egypt/1171SG/201 1.0000     21  A/duck/France/080036/200 1.0000     21  
A/chicken/Yangon/182/201 1.0000     21  A/chicken/Scotland/59|X0 1.0000     21  
A/chicken/Sharkia/CAI41/ 1.0000     21  A/mallard/Sweden/21/2002 1.0000     21  
A/environment/Bangladesh 1.0000     21  A/chicken/Hebei/A8/2009  1.0000     21  
A/chicken/Egypt/11VIR445 1.0000     21  A/duck/Guangxi/13/2004   1.0000     21  
A/duck/France/090043/200 1.0000     21  A/chicken/Denpasar/BBVD1 1.0000     21  
A/Egypt/N6774/2011       1.0000     21  A/parrot/CA/6032/04|DQ25 1.0000     21  
A/Cambodia/VN05103/2005  1.0000     21  A_GenBank/heron/Cambodia 1.0000     21  
A/chicken/Bangladesh/11r 1.0000     21  A/chicken/Tabanan/BBVD14 1.0000     21  
A/great_cormorant/Tibet/ 1.0000     21  A/Egypt/321NAMRU3/2007   1.0000     21  
A/chicken/Egypt/10512AG/ 1.0000     21  AHAH5_[11734;11734]      1.0000     21  
A/Egypt/9174NAMRU3/2009  1.0000     21  A/Indonesia/NIHRD12379/2 1.0000     21  
A/chicken/Korea/ES/03    1.0000     21  A/avian/New_York/Sg00377 1.0000     21  
A/chicken/Vietnam/NCVD09 1.0000     21  A/Chicken/TurkeyMus/09rs 1.0000     21  
A/duck/Hong_Kong/312/197 1.0000     21  A/Vietnam/UT3030/2003    1.0000     21  
A/crow/Bangladesh/11rs19 1.0000     21  A/duck/Primorie/2633/200 1.0000     21  
A/Indonesia/UT3006/2005  1.0000     21  A/duck/Qalubia/CAI11/201 1.0000     21  
A/green_winged_teal/Dela 1.0000     21  A/chicken/Anhui/T5/2006  1.0000     21  
A/chicken/Puebla/8623607 1.0000     21  A/duck/Guangxi/951/2005  1.0000     21  
A/chicken/Egypt/1219s/20 1.0000     21  A/chicken/WestJava/SmiSu 1.0000     21  
A/chicken/Cambodia/TLC2/ 1.0000     21  A/duck/France/05056a/200 1.0000     21  
A/Shandong/1/2009        1.0000     21  A/chicken/Vietnam/NCVD40 1.0000     21  
A/chicken/Queretaro/7653 1.0000     21  A/environment/Bangladesh 1.0000     21  
A/barn_swallow/Hong_Kong 1.0000     21  A/duck/Primorie/2621/200 1.0000     21  
A/chicken/BacLieuVietnam 1.0000     21  A_DISC/Cambodia/V0401301 1.0000     21  
A/bar_headed_goose/Mongo 1.0000     21  A/chicken/Egypt/113Q/201 1.0000     21  
A/quail/Thanatpin/2283/2 1.0000     21  A/chicken/Egypt/125s/201 1.0000     21  
A/duck/Hong_Kong/698/197 1.0000     21  A/chicken/Egypt/209573/2 1.0000     21  
A/chicken/Indonesia/SmiW 1.0000     21  A/turkey/Egypt/091QNLQP/ 1.0000     21  
A/duck/Egypt/1053/2010   1.0000     21  A/Egypt/2786NAMRU3/2006  1.0000     21  
A/mallard/Netherlands/3/ 1.0000     21  A/chicken/Bangladesh/11r 1.0000     21  
A/chicken/Liaoning/23/20 1.0000     21  A/unknown/NY/98996/01|AY 1.0000     21  
A/tern/South_Africa/1961 1.0000     21  A/chicken/Nepal/T1P/12   1.0000     21  
A/marabou_stork/Cambodia 1.0000     21  A/chicken/Cambodia/67F1/ 1.0000     21  
A/gadwall/California/442 1.0000     21  A/chicken/TanseMyanmar/S 1.0000     21  
A/duck/Cao_Bang/43/2007  1.0000     21  A/chicken/Miyazaki/T10/2 1.0000     21  
A/whitefaced_whistling_d 1.0000     21  A/muscovy_duck/Vietnam/N 1.0000     21  
A/Canada_goose/Alaska//4 1.0000     21  A/chicken/Bangladesh/967 1.0000     21  
A/chicken/Egypt/11VIR445 1.0000     21  A/Hong_Kong/7032/2012    1.0000     21  
A/chicken/Vietnam/945/20 1.0000     21  A/ostrich/South_Africa/A 1.0000     21  
A/wild_bird/Wisconsin/43 1.0000     21  A/spurwinged_goose/Niger 1.0000     21  
A/duck/Vietnam/NCVD1026/ 1.0000     21  A/tern/South_Africa/1959 1.0000     21  
A/muscovy_duck/Jakarta/S 1.0000     21  A/goose/Germany/R3160/09 1.0000     21  
A/turkey/Ontario/7732/19 1.0000     21  A/chicken/Egypt/1090/201 1.0000     21  
A/mallard/Netherlands/2/ 1.0000     21  A/chicken/Vietnam/NCVD18 1.0000     21  
A/chicken/Texas/1672804/ 1.0000     21  A/duck/Italy/775/2004|CY 1.0000     21  
A/chicken/Bangladesh/FD( 1.0000     21  A/chicken/Vietnam/NCVD40 1.0000     21  
A/swan/Hokkaido/67/1996| 1.0000     21  A/chicken/Bangladesh/152 1.0000     21  
A/chicken/Bangladesh/11r 1.0000     21  A/chicken/Indonesia/Suka 1.0000     21  
A/gull/Pennsylvania/4175 1.0000     21  A/turkey/England/N28/73| 1.0000     21  
A/chicken/Badung/BBVD302 1.0000     21  A/chicken/Bangladesh/11r 1.0000     21  
A/chicken/Yichang/lung1/ 1.0000     21  A/avian/Missouri/4655937 1.0000     21  
A/turkey/TX/14082/1982_H 1.0000     21  A/Cambodia/W0526301/2012 1.0000     21  
A/chicken/Vietnam/NCVD11 1.0000     21  A/duck/Egypt/SHZA6605/20 1.0000     21  
A/chicken/Shandong/A5/20 1.0000     21  A/chicken/VA/40018/1984_ 1.0000     21  
A/common_magpie/HongKong 1.0000     21  A/shearwater/Australia/7 1.0000     21  
A/Chicken/TurkeyEdirne/0 1.0000     21  A/goose/Guiyang/337/2006 1.0000     21  
A/chicken/Egypt/11VIR445 1.0000     21  A/environment/Thailand/I 1.0000     21  
A/wild_bird_feces/Byeong 1.0000     21  A/duck/Vietnam/NCVD422/2 1.0000     21  
A/chicken/Bhutan/4/10    1.0000     21  A/turkey/MN/40550/1987_H 1.0000     21  
A/chicken/Egypt/1085/201 1.0000     21  A/duck/France/06436/2006 1.0000     21  
A/HongKong/6841/2010     1.0000     21  A/chicken/WestBengal/239 1.0000     21  
A/duck/Bac_Lieu/1213/200 1.0000     21  A/cinnamon_teal/Californ 1.0000     21  
A/Muscovy_duck/France/07 1.0000     21  A/chicken/Vietnam/4/2010 1.0000     21  
A/chicken/Vietnam/NCVD01 1.0000     21  A/chicken/Puebla/1458665 1.0000     21  
A/Northern_shoveler/Utah 1.0000     21  A/tundra_swan/Alaska//48 1.0000     21  
A/chicken/Sheny/0606/200 1.0000     21  A/turkey/England/N28/73| 1.0000     21  
A/duck/Iran/VIR53161/201 1.0000     21  A/chicken/Yangon/1023/20 1.0000     21  
A/chicken/Vietnam/5/2010 1.0000     21  A/chicken/Hebei/326/2005 1.0000     21  
A/chicken/Bangladesh/150 1.0000     21  A/wild_bird/Minnesota/46 1.0000     21  
A/chicken/India/81766/20 1.0000     21  
********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme multibasic-uniq.fa -mod zoops -nmotifs 10 

model:  mod=         zoops    nmotifs=        10    evt=           inf
object function=  E-value of product of p-values
width:  minw=            8    maxw=           21    minic=        0.00
width:  wg=             11    ws=              1    endgaps=       yes
nsites: minsites=        2    maxsites=      253    wnsites=       0.8
theta:  prob=            1    spmap=         pam    spfuzz=        120
global: substring=     yes    branching=      no    wbranch=        no
em:     prior=       megap    b=           26565    maxiter=        50
        distance=    1e-05
data:   n=            5313    N=             253

sample: seed=            0    seqfrac=         1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.481 C 0.062 D 0.001 E 0.000 F 0.000 G 0.333 H 0.000 I 0.000 K 0.000 
L 0.000 M 0.000 N 0.000 P 0.000 Q 0.000 R 0.001 S 0.000 T 0.122 V 0.000 
W 0.000 Y 0.000 
Background letter frequencies (from dataset with add-one prior applied):
A 0.479 C 0.062 D 0.001 E 0.000 F 0.000 G 0.332 H 0.000 I 0.000 K 0.001 
L 0.000 M 0.000 N 0.001 P 0.000 Q 0.000 R 0.001 S 0.000 T 0.122 V 0.000 
W 0.000 Y 0.000 
********************************************************************************


********************************************************************************
MOTIF  1	width =   21   sites =  47   llr = 971   E-value = 5.0e-239
********************************************************************************
--------------------------------------------------------------------------------
	Motif 1 Description
--------------------------------------------------------------------------------
Simplified        A  928298a29a:a::4::8:::
pos.-specific     C  :::::::8::::::49:1:::
probability       D  :::::::::::::::::::::
matrix            E  :::::::::::::::::::::
                  F  :::::::::::::::::::::
                  G  :82811::1:a:aa:::1:::
                  H  :::::::::::::::::::::
                  I  :::::::::::::::::::::
                  K  :::::::::::::::::::::
                  L  :::::::::::::::::::::
                  M  :::::::::::::::::::::
                  N  :::::::::::::::::::::
                  P  :::::::::::::::::::::
                  Q  :::::::::::::::::::::
                  R  :::::::::::::::::::::
                  S  :::::::::::::::::::::
                  T  ::::::::::::::21a:9a9
                  V  :::::::::::::::::::::
                  W  :::::::::::::::::::::
                  Y  :::::::::::::::::::::

         bits   12.4                      
                11.1                      
                 9.9                      
                 8.7                      
Relative         7.4                      
Entropy          6.2                      
(29.8 bits)      5.0                      
                 3.7                *     
                 2.5        *       ** ***
                 1.2 ** ** ** ******** ***
                 0.0 ---------------------

Multilevel           AGAGAAACAAGAGGACTATTT
consensus               A   A      C      
sequence                                  
                                          
                                          
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                    Site       
-------------             ----- ---------            ---------------------
AHAH5_[11734;11734]           1  3.05e-19          . CNAAKWGAARGAGADRDNRKR           
A/environment/New_York/1      1  7.24e-13          . AGAGAAACAAGAGGCCTATTT           
A/Northern_shoveler/Utah      1  1.11e-12          . AGAGAAACAAGAGGCCTCTTT           
A/gadwall/California/442      1  2.10e-12          . AGGGAAACAAGAGGCCTATTT           
A/wigeon/Ohio/379/1988|C      1  2.82e-12          . AGAGAAACAAGAGGCCTGTTT           
A/wild_bird/Minnesota/46      1  4.20e-12          . AGAGAAACAAGAGGTCTATTT           
A/green_winged_teal/Dela      1  5.44e-12          . AGAAAAACAAGAGGCCTATTT           
A/wood_duck/MD/04623/200      1  9.89e-12          . AGAGAAACAAGAGGACTATTT           
A/mallard/Washington/454      1  9.89e-12          . AAAGAAACAAGAGGCCTATTT           
A/tundra_swan/Alaska//48      1  1.29e-11          . AGAGGAACAAGAGGCCTATTT           
A/duck/Victoria/26/1981|      1  1.29e-11          . AGGGAGACAAGAGGCCTATTT           
A/cinnamon_teal/Californ      1  1.49e-11          . AAAGAAACAAGAGGCCTCTTT           
A/turkey/TX/14082/1982_H      1  1.88e-11          . AGAGAAACAAGAGGTCTGTTT           
A/avian/Missouri/4655937      1  1.88e-11          . AGAGAAACAAGAGGCTTATTT           
A/unknown/NY/98996/01|AY      1  1.88e-11          . GGAGAAACAAGAGGCCTATTT           
A/duck/Hong_Kong/698/197      1  2.08e-11          . AGAGAGACAAGAGGTCTATTT           
A/mallard/Sweden/21/2002      1  2.67e-11          . CGAGAAACAAGAGGACTATTT           
A/environment/Maryland/1      1  3.01e-11          . AGAGAAACAAGAGGCCCATTT           
A/chicken/Texas/1672804/      1  3.63e-11          . AGAGAAAAAAGAGGCCTATTT           
A/goose/Germany/R3160/09      1  4.14e-11          . AGAGAGACAAGAGGACTATTT           
A/mallard/Netherlands/2/      1  5.83e-11          . AGAAAAACAAGAGGACTATTT           
A/chicken/Ibaraki/17/200      1  5.83e-11          . AGGGAAACAAGAGGCTTATTT           
A/shearwater/Australia/7      1  6.48e-11          . AGGGAGACAAGAGGTCTATTT           
A/mallard/Crimea/245/200      1  6.48e-11          . AGAGAAACAAGAGGGCTATTT           
A/duck/France/080036/200      1  8.17e-11          . AAAGAAACAAGAGGACTATTT           
A/duck/Italy/775/2004|CY      1  9.22e-11          . AGAGATACAAGAGGACTATTT           
A/duck/Hokkaido/Vac3/200      1  1.27e-10          . AGAGAAACAAGAGGACTATTC           
A/parrot/CA/6032/04|DQ25      1  1.65e-10          . AAAGAAACAAGAGGCTTATTT           
A/chicken/Ibaraki/15/200      1  1.65e-10          . AGAGAAACAAGAGGATTATTT           
A/swan/Hokkaido/67/1996|      1  2.49e-10          . AGAGAAACAAGAGGACTACTT           
A/duck/France/090043/200      1  2.89e-10          . AGAGAGACGAGAGGACTATTT           
A/spurwinged_goose/Niger      1  2.89e-10          . AGAGAAAAAAGAGGACTATTT           
A/duck/France/05056a/200      1  4.65e-10          . AAAGAAACAAGAGGGCTATTT           
A/chicken/Texas/2983132/      1  5.19e-10          . AGGAAAAAAAGAGGCCTATTT           
A/duck/New_Zealand/41/19      1  6.33e-10          . AGAGACACAAGGGGCCTGTTT           
A/chicken/Belgium/150VB/      1  7.84e-10          . AAGGAGACAAGAGGACTATTT           
A/duck/France/06436/2006      1  8.65e-10          . AAAGAAACAAGAGGACTATTC           
A/Muscovy_duck/France/07      1  1.05e-09          . AAAGAAGCAAGAGGACTATTT           
A/gull/Pennsylvania/4175      1  1.05e-09          . AGAGAAACAAAAGGTCTGTTT           
A/chicken/Scotland/59|X0      1  5.46e-09          . AGGAAGAAAAGAGGTCTATTT           
A/swan/England/AV3142149      1  5.93e-09          . AGAAAAAAGAGAGGACTATTT           
A/duck/Hunan/149/2005         1  8.40e-09          . AGAAGAAAAAGAGGACTATTT           
A/bar_headed_goose/Mongo      1  2.05e-08          . AGAAGAAAAAGAGGACTGTTT           
A/chick/Pennsylvania/1/1      1  2.05e-08          . AGGAAAAAGAGAGGTCTGTTT           
A/whooper_swan/Mongolia/      1  5.15e-08          . ATTGAAACTAGAGGATTATTT           
A/chicken/VA/40018/1984_      1  8.00e-08          . AAGAAAAAGAGAGGTCTGTTT           
A/mallard/Maryland/786/2      1  3.02e-04          . GGAGCAATAGCAGGATTCATA           
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
AHAH5_[11734;11734]               3.1e-19  [1]
A/environment/New_York/1          7.2e-13  [1]
A/Northern_shoveler/Utah          1.1e-12  [1]
A/gadwall/California/442          2.1e-12  [1]
A/wigeon/Ohio/379/1988|C          2.8e-12  [1]
A/wild_bird/Minnesota/46          4.2e-12  [1]
A/green_winged_teal/Dela          5.4e-12  [1]
A/wood_duck/MD/04623/200          9.9e-12  [1]
A/mallard/Washington/454          9.9e-12  [1]
A/tundra_swan/Alaska//48          1.3e-11  [1]
A/duck/Victoria/26/1981|          1.3e-11  [1]
A/cinnamon_teal/Californ          1.5e-11  [1]
A/turkey/TX/14082/1982_H          1.9e-11  [1]
A/avian/Missouri/4655937          1.9e-11  [1]
A/unknown/NY/98996/01|AY          1.9e-11  [1]
A/duck/Hong_Kong/698/197          2.1e-11  [1]
A/mallard/Sweden/21/2002          2.7e-11  [1]
A/environment/Maryland/1            3e-11  [1]
A/chicken/Texas/1672804/          3.6e-11  [1]
A/goose/Germany/R3160/09          4.1e-11  [1]
A/mallard/Netherlands/2/          5.8e-11  [1]
A/chicken/Ibaraki/17/200          5.8e-11  [1]
A/shearwater/Australia/7          6.5e-11  [1]
A/mallard/Crimea/245/200          6.5e-11  [1]
A/duck/France/080036/200          8.2e-11  [1]
A/duck/Italy/775/2004|CY          9.2e-11  [1]
A/duck/Hokkaido/Vac3/200          1.3e-10  [1]
A/parrot/CA/6032/04|DQ25          1.7e-10  [1]
A/chicken/Ibaraki/15/200          1.7e-10  [1]
A/swan/Hokkaido/67/1996|          2.5e-10  [1]
A/duck/France/090043/200          2.9e-10  [1]
A/spurwinged_goose/Niger          2.9e-10  [1]
A/duck/France/05056a/200          4.7e-10  [1]
A/chicken/Texas/2983132/          5.2e-10  [1]
A/duck/New_Zealand/41/19          6.3e-10  [1]
A/chicken/Belgium/150VB/          7.8e-10  [1]
A/duck/France/06436/2006          8.6e-10  [1]
A/Muscovy_duck/France/07            1e-09  [1]
A/gull/Pennsylvania/4175            1e-09  [1]
A/chicken/Scotland/59|X0          5.5e-09  [1]
A/swan/England/AV3142149          5.9e-09  [1]
A/duck/Hunan/149/2005             8.4e-09  [1]
A/bar_headed_goose/Mongo            2e-08  [1]
A/chick/Pennsylvania/1/1            2e-08  [1]
A/whooper_swan/Mongolia/          5.1e-08  [1]
A/chicken/VA/40018/1984_            8e-08  [1]
A/mallard/Maryland/786/2           0.0003  [1]
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 1 width=21 seqs=47
AHAH5_[11734;11734]      (    1) CNAAKWGAARGAGADRDNRKR  1 
A/environment/New_York/1 (    1) AGAGAAACAAGAGGCCTATTT  1 
A/Northern_shoveler/Utah (    1) AGAGAAACAAGAGGCCTCTTT  1 
A/gadwall/California/442 (    1) AGGGAAACAAGAGGCCTATTT  1 
A/wigeon/Ohio/379/1988|C (    1) AGAGAAACAAGAGGCCTGTTT  1 
A/wild_bird/Minnesota/46 (    1) AGAGAAACAAGAGGTCTATTT  1 
A/green_winged_teal/Dela (    1) AGAAAAACAAGAGGCCTATTT  1 
A/wood_duck/MD/04623/200 (    1) AGAGAAACAAGAGGACTATTT  1 
A/mallard/Washington/454 (    1) AAAGAAACAAGAGGCCTATTT  1 
A/tundra_swan/Alaska//48 (    1) AGAGGAACAAGAGGCCTATTT  1 
A/duck/Victoria/26/1981| (    1) AGGGAGACAAGAGGCCTATTT  1 
A/cinnamon_teal/Californ (    1) AAAGAAACAAGAGGCCTCTTT  1 
A/turkey/TX/14082/1982_H (    1) AGAGAAACAAGAGGTCTGTTT  1 
A/avian/Missouri/4655937 (    1) AGAGAAACAAGAGGCTTATTT  1 
A/unknown/NY/98996/01|AY (    1) GGAGAAACAAGAGGCCTATTT  1 
A/duck/Hong_Kong/698/197 (    1) AGAGAGACAAGAGGTCTATTT  1 
A/mallard/Sweden/21/2002 (    1) CGAGAAACAAGAGGACTATTT  1 
A/environment/Maryland/1 (    1) AGAGAAACAAGAGGCCCATTT  1 
A/chicken/Texas/1672804/ (    1) AGAGAAAAAAGAGGCCTATTT  1 
A/goose/Germany/R3160/09 (    1) AGAGAGACAAGAGGACTATTT  1 
A/mallard/Netherlands/2/ (    1) AGAAAAACAAGAGGACTATTT  1 
A/chicken/Ibaraki/17/200 (    1) AGGGAAACAAGAGGCTTATTT  1 
A/shearwater/Australia/7 (    1) AGGGAGACAAGAGGTCTATTT  1 
A/mallard/Crimea/245/200 (    1) AGAGAAACAAGAGGGCTATTT  1 
A/duck/France/080036/200 (    1) AAAGAAACAAGAGGACTATTT  1 
A/duck/Italy/775/2004|CY (    1) AGAGATACAAGAGGACTATTT  1 
A/duck/Hokkaido/Vac3/200 (    1) AGAGAAACAAGAGGACTATTC  1 
A/parrot/CA/6032/04|DQ25 (    1) AAAGAAACAAGAGGCTTATTT  1 
A/chicken/Ibaraki/15/200 (    1) AGAGAAACAAGAGGATTATTT  1 
A/swan/Hokkaido/67/1996| (    1) AGAGAAACAAGAGGACTACTT  1 
A/duck/France/090043/200 (    1) AGAGAGACGAGAGGACTATTT  1 
A/spurwinged_goose/Niger (    1) AGAGAAAAAAGAGGACTATTT  1 
A/duck/France/05056a/200 (    1) AAAGAAACAAGAGGGCTATTT  1 
A/chicken/Texas/2983132/ (    1) AGGAAAAAAAGAGGCCTATTT  1 
A/duck/New_Zealand/41/19 (    1) AGAGACACAAGGGGCCTGTTT  1 
A/chicken/Belgium/150VB/ (    1) AAGGAGACAAGAGGACTATTT  1 
A/duck/France/06436/2006 (    1) AAAGAAACAAGAGGACTATTC  1 
A/Muscovy_duck/France/07 (    1) AAAGAAGCAAGAGGACTATTT  1 
A/gull/Pennsylvania/4175 (    1) AGAGAAACAAAAGGTCTGTTT  1 
A/chicken/Scotland/59|X0 (    1) AGGAAGAAAAGAGGTCTATTT  1 
A/swan/England/AV3142149 (    1) AGAAAAAAGAGAGGACTATTT  1 
A/duck/Hunan/149/2005    (    1) AGAAGAAAAAGAGGACTATTT  1 
A/bar_headed_goose/Mongo (    1) AGAAGAAAAAGAGGACTGTTT  1 
A/chick/Pennsylvania/1/1 (    1) AGGAAAAAGAGAGGTCTGTTT  1 
A/whooper_swan/Mongolia/ (    1) ATTGAAACTAGAGGATTATTT  1 
A/chicken/VA/40018/1984_ (    1) AAGAAAAAGAGAGGTCTGTTT  1 
A/mallard/Maryland/786/2 (    1) GGAGCAATAGCAGGATTCATA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 253 bayes= 3.90811 E= 5.0e-239 
    90    -56    -60    174    142   -291     71    203     -4    259    154     54    235    175    -78    517   -525    377   -128    -25 
  -167   -590    204    358    201    124    239    247    205    279    197    509    293    282     96    508   -273    342      7    107 
    69   -571   -100    118     89    -81     33    138    -66    196     96     34    230    146   -121    493   -238    319   -177    -72 
  -121   -641    -19    153     68    123     59    106     -9    161     58     61    191    129    -94    427   -609    255   -157    -60 
    83   -161     94    349    310   -252    214    386    505    442    329    162    273    302     74    629   -443    554     32    133 
    68   -158     64    317    279   -135    185    354    146    410    298    139    264    276     44    606   -243    522    559    103 
    98   -625   -131     77     52   -292      2     93   -101    157     47    -17    181     98   -159    434   -598    268   -202   -104 
  -115    359   -108    110     85   -668     28    137    -74    191     90     29    229    142   -126    489   -238    315   -182    -76 
    87   -557    -81    145    114   -196     51    169    -36    226    123     44    232    159   -101    504   -238    347   -154    -50 
    96   -547    -53    178    143   -381     73    204      8    262    154     52    223    173    421    508   -536    377   -125    -23 
  -438   -209    245    398    231    148    276    278    248    305    226    301    312    313    137    513   -552    353     47    144 
   101   -633   -136     70     46   -385     -3     85   -108    150     39    -23    176     92   -165    427   -605    260   -206   -109 
  -965   -907   -110     29    -56    159    -32    -75   -117     17   -143    -80     40    -20   -205    127   -901    -11   -235   -158 
  -440   -623    223    375    209    151    254    254    225    283    202    277    289    290    115    487   -578    328     25    122 
   -26    251    481    124     87   -290     39    134    -62    192     93     49    232    149   -120    493     46    315   -180    -72 
  -681    378   -119     89     66   -770     18    119    -55    163     45    -27    152     93    418    377     -1    226   -201    -78 
  -679   -162    475    225    185   -776    161    323    128    289    245    216    224    268     11    592    292    386    -74     30 
    65      1    -57    166    131   -119     67    189    -14    246    142    523    236    172    -86    513   -526    365   -139    -34 
  -422   -164     71    261    227   -711    195    367    169    334    292    251    273    311    415    642    287    437    -36     66 
  -891   -794   -111     53     23   -922     11    119    524    117     38     15     80     88   -142    375    299    178   -207   -111 
  -420    -68     64    254    221   -707    188    359    160    327    284    243    270    304    416    635    284    431    -43     60 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 47 E= 5.0e-239 
 0.914894  0.042553  0.000000  0.000000  0.000000  0.042553  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.191489  0.000000  0.000000  0.000000  0.000000  0.765957  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000 
 0.787234  0.000000  0.000000  0.000000  0.000000  0.191489  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000 
 0.212766  0.000000  0.000000  0.000000  0.000000  0.787234  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.893617  0.021277  0.000000  0.000000  0.000000  0.063830  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.787234  0.021277  0.000000  0.000000  0.000000  0.148936  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.021277  0.000000 
 0.957447  0.000000  0.000000  0.000000  0.000000  0.042553  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.212766  0.765957  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000 
 0.893617  0.000000  0.000000  0.000000  0.000000  0.085106  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000 
 0.957447  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.021277  0.021277  0.000000  0.000000  0.000000  0.957447  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.978723  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.021277  0.000000  0.000000  0.000000  0.000000  0.978723  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.404255  0.361702  0.021277  0.000000  0.000000  0.042553  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.170213  0.000000  0.000000  0.000000 
 0.000000  0.851064  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.127660  0.000000  0.000000  0.000000 
 0.000000  0.021277  0.021277  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.957447  0.000000  0.000000  0.000000 
 0.765957  0.063830  0.000000  0.000000  0.000000  0.148936  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.021277  0.021277  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.936170  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.978723  0.000000  0.000000  0.000000 
 0.021277  0.042553  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021277  0.000000  0.914894  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 regular expression
--------------------------------------------------------------------------------
AGA[GA]AAA[CA]AAGAGG[AC]CTATTT
--------------------------------------------------------------------------------




Time 54.91 secs.

********************************************************************************


********************************************************************************
MOTIF  2	width =   21   sites =  93   llr = 1061   E-value = 4.5e-207
********************************************************************************
--------------------------------------------------------------------------------
	Motif 2 Description
--------------------------------------------------------------------------------
Simplified        A  8:9:a28189:aa19a89a75
pos.-specific     C  ::::::::1::::::::::::
probability       D  :::::::::::::::::::::
matrix            E  :::::::::::::::::::::
                  F  :::::::::::::::::::::
                  G  291a:82911a::91:21:35
                  H  :::::::::::::::::::::
                  I  :::::::::::::::::::::
                  K  :::::::::::::::::::::
                  L  :::::::::::::::::::::
                  M  :::::::::::::::::::::
                  N  :::::::::::::::::::::
                  P  :::::::::::::::::::::
                  Q  :::::::::::::::::::::
                  R  :::::::::::::::::::::
                  S  :::::::::::::::::::::
                  T  :1:::::::::::::::::::
                  V  :::::::::::::::::::::
                  W  :::::::::::::::::::::
                  Y  :::::::::::::::::::::

         bits   12.4                      
                11.1                      
                 9.9                      
                 8.7                      
Relative         7.4                      
Entropy          6.2                      
(16.5 bits)      5.0                      
                 3.7                      
                 2.5                      
                 1.2  * *** * *******  *  
                 0.0 ---------------------

Multilevel           AGAGAGAGAAGAAGAAAAAAG
consensus            G    AG            GA
sequence                                  
                                          
                                          
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                    Site       
-------------             ----- ---------            ---------------------
A/great_cormorant/Tibet/      1  3.08e-09          . GGARAGAGAAGAAGAAAAAAG           
A/chicken/Shan/2626/2007      1  1.84e-08          . AGAGAGAGAAGAAGAAAAAAG           
A/duck/Vietnam/OIE1287/2      1  3.14e-08          . AGAGAGAGAAGAAGAAAAAGG           
A/muscovy_duck/Jakarta/S      1  5.58e-08          . AGAGAGAGCAGAAGAAAAAAG           
A/Vietnam/UT3030/2003         1  5.58e-08          . AGAGAGAGAAGAAGAAAAAAA           
A/chicken/Magelang/BBVW6      1  7.67e-08          . AGAGAGAGCAGAAGAAAAAGG           
A/chicken/Vietnam/NCVD19      1  7.67e-08          . AGAGAGAGAAGAAGAAAAAGA           
A/duck/Bac_Lieu/1213/200      1  9.16e-08          . AGAGAGGGAAGAAGAAAAAAG           
A/chicken/Sharkia/CAI41/      1  1.04e-07          . GGAGAGAGAAGAAGAAAAAAG           
A/chicken/Tabanan/BBVD14      1  2.08e-07          . AGAGAGAGAAGAAGAAAGAAG           
A/duck/Jiangxi/80/2005        1  2.08e-07          . AGAGAAAGAAGAAGAAAAAAG           
A/chicken/Badung/BBVD302      1  2.17e-07          . ATAGAGAGAAGAAGAAAAAAG           
A/chicken/Banten/PdglKas      1  2.53e-07          . AGAGAGAGGAGAAGAAAAAAG           
A/o.bill_stork/Thailand/      1  2.53e-07          . AGAGAGAGAAGACGAAAAAAG           
A/chicken/Bangladesh/150      1  3.10e-07          . GGAGAGAGAAGAAGAAAAAGA           
A/chicken/Yangon/182/201      1  3.10e-07          . AGAGAGAGAAGAAGAAGAAAA           
A/chicken/Shandong/A1/20      1  3.10e-07          . AGAGAAAGAAGAAGAAAAAGG           
A/duck/Qalubia/CAI11/201      1  3.89e-07          . GGAGAGGGAAGAAGAAAAAAG           
A/Indonesia/UT3006/2005       1  3.89e-07          . AGAGAAAGCAGAAGAAAAAAG           
A/goose/Fujian/bb/2003        1  3.89e-07          . AGAGAGAGAAGAAGGAAAAAG           
A/environment/Thailand/I      1  4.76e-07          . AGAGAGAGAGGAAGAAAAAAG           
A/chicken/EastKalimantan      1  4.76e-07          . AGAGAGAGTAGAAGAAAAAAG           
A/swine/NorthSumatra/UT6      1  4.76e-07          . AGGGAGAGAAGAAGAAAAAAG           
A/duck/Cao_Bang/43/2007       1  5.46e-07          . AGAGAAAGAAGAAGAAAAAGA           
A/muscovy_duck/Vietnam/N      1  6.23e-07          . AGAGAAGGAAGAAGAAAAAAG           
A/Indonesia/NIHRD12379/2      1  6.23e-07          . AGAGAGAGCAGAAGGAAAAAG           
A/Egypt/321NAMRU3/2007        1  6.23e-07          . GGAGAGAGAAGAAGAAGAAAG           
A/chicken/India/81766/20      1  7.12e-07          . GGAGAGAGAAGAAGAAAGAAG           
A/chicken/Bangladesh/967      1  7.12e-07          . GGAGAAAGAAGAAGAAAAAAG           
A/chicken/Nepal/T1P/12        1  7.12e-07          . AGAGAGAGGAGAAGAAAAAGA           
A/Thailand/WRAIR1720H/20      1  7.12e-07          . AGAGAGAAAAGAAGAAAAAAG           
A/goose/Guiyang/337/2006      1  7.95e-07          . AGAGAGAGAAGGAGAAAAAAG           
A/Muscovy_duck/Ca_Mau/11      1  7.95e-07          . AGAGAGGGGAGAAGAAAAAAG           
A/owstons_civet/VietNam/      1  8.77e-07          . AGAGAGAGAAGAAGGAAAAGA           
A/chicken/Bangladesh/152      1  1.20e-06          . AGGGAGAGAAGAAGAAAAAGA           
A/chicken/Liaoning/23/20      1  1.20e-06          . GGAGAGAGAAGAAGGAAAAAG           
A/condor/Guangdong/139/2      1  1.20e-06          . AGAGGGAGAAGAAGAAAAAAG           
A/muscovy_duck/Vietnam/L      1  1.20e-06          . ATAGAGAGAAGAAGAAGAAAG           
A/chicken/Hebei/326/2005      1  1.32e-06          . AGAGAGGGAGGAAGAAAAAAG           
A/chicken/Inhu/BPPVRII/2      1  1.32e-06          . AGGGAGGGAAGAAGAAAAAAG           
A/chicken/WestBengal/239      1  1.45e-06          . GGAGAGAGGAGAAGAAAAAAA           
A/bird/Turkey/Unye_ist06      1  1.45e-06          . GGGGAGAGAAGAAGAAAAAAG           
A/chicken/Sheny/0606/200      1  1.67e-06          . AGAGAGGGAAGAAGGAAAAAA           
A/chicken/Miyazaki/T10/2      1  1.67e-06          . AGAGAGAAAAGAAGAAAAAGA           
A/duck/Guangxi/668/2004       1  1.67e-06          . AGAGAGATAAGAAGAAAAAAG           
A/Cambodia/W0526301/2012      1  1.92e-06          . AGAGAGGAAAGAAGAAAAAAG           
A/chicken/Egypt/11VIR445      1  1.92e-06          . GGAGAGGGAAGAAGAAAGAAG           
A/chicken/Egypt/113Q/201      1  1.92e-06          . GGAGAAGGAAGAAGAAAAAAG           
A/Hubei/1/2010                1  1.92e-06          . AGAGAGAGAAGGAGAAAAAGA           
A/duck/Vietnam/NCVD1463/      1  1.92e-06          . ATAGAGAGAAGAAGAAGAAAA           
A/chicken/Shandong/A10/2      1  1.92e-06          . AGAGGGAGAAGAAGAAAAAAA           
A/chicken/Cambodia/67F1/      1  2.10e-06          . AGAGAGGGAAGGAGAAAAAAG           
A/chicken/Liaoning/A1/20      1  2.10e-06          . AGAGAGGGAGGAAGAAAAAAA           
A/chicken/Egypt/1158SF/2      1  2.10e-06          . GGAGAGAAAAGAAGAAAAAAG           
A/Shandong/1/2009             1  2.34e-06          . AGAGAAAGAAGAAGAAGAAGA           
A/chicken/Egypt/1085/201      1  2.60e-06          . GGAGAGGGAAGAAGAAGAAAA           
A/chicken/Hebei/A8/2009       1  2.60e-06          . AGAGGGAGAAGAAGAAAAAGA           
A/chicken/CentralJava/UT      1  2.60e-06          . AGAGAGAGAAGAAAAAAAAGA           
A_DISC/Cambodia/V0401301      1  2.91e-06          . AGAGTGGGAAGAAGAAAAAAG           
A/chicken/Lampung/BPPVRI      1  2.91e-06          . AGAGAAAGCAGAAGGAAAAAG           
A/chicken/Vietnam/NCVD40      1  3.27e-06          . AGAGAAAGGAGAAGAAAAAGA           
A/duck/Vietnam/NCVD366/2      1  3.27e-06          . AGAGATGGAAGAAGAAAAAAG           
A/duck/Yunnan/47/2006         1  3.27e-06          . AGAAAGAGAAGAAGAAAAAAG           
A/chicken/Denpasar/BBVD1      1  3.61e-06          . AGAGAGAGAAGAAGAGAAAAG           
A/Hunan/1/2009                1  3.93e-06          . AGAGAAAGAAGAAGGAAAAGA           
A/chicken/Vietnam/NCVD09      1  4.40e-06          . ATAGAGGGAAGAAGAAGAAAA           
A/duck/Guangxi/951/2005       1  5.43e-06          . AGTGAAAGAAGAAGAAAAAGA           
A/environment/Bangladesh      1  5.95e-06          . AGGGAGAGGAGAAGAAAAAGA           
A/environment/ChangSha/2      1  5.95e-06          . AGAGAGAGAAGAGGAAAAAGA           
A/chicken/India/241272/2      1  5.95e-06          . GGAGAGAGGAGAAGAAAGAAA           
A/quail/Thanatpin/2283/2      1  6.62e-06          . AGAGAAAAAAGAAGAAAAAGA           
A/chicken/Sikkim/151466/      1  6.62e-06          . GGTGAGAGAAGAAGAAAGAAG           
A/chicken/Bangladesh/830      1  6.62e-06          . GGAGAGAGAAGAAAAAAAAGA           
A/chicken/Shandong/A5/20      1  7.33e-06          . AGAGAGGGAGGAAGAAGAAAA           
A/domestic_goose/Hong_Ko      1  8.76e-06          . ATAGAGAGGAGAAGAAGAAAA           
A/chicken/Egypt/10512AG/      1  9.60e-06          . GAAGAGGGAAGAAGAAAAAAG           
A/duck/Guangxi/13/2004        1  9.60e-06          . AGAGAAAGAAGAAAAAAAAGA           
A/Vietnam/UT30259/2004        1  9.60e-06          . AGAGAGAGAAGAAAAAAGAGA           
A/spurwinged_goose/Niger      1  1.16e-05          . AGAGAAAAAAGAAGAAAGAAG           
A/chicken/Vietnam/NCVD18      1  1.27e-05          . AAAGAAAGAAGAAGAAAAAGA           
A/duck/Vietnam/NCVD1026/      1  1.27e-05          . ATAGAGAGAGGAAGAAGAAAA           
A/chicken/WestJava/SmiAc      1  1.27e-05          . AGAGAGAGCAGACGTAAAAAA           
A/Vietnam/HN36250/2010        1  1.51e-05          . AGAGAAAAAAGAAGAAGAAAA           
A/chicken/Vietnam/NCVD40      1  1.66e-05          . AGAGAAAGGAGAAGGAAAAGA           
A/duck/Vietnam/NCVD422/2      1  1.96e-05          . AGGGAAAGGAGAAGAAAAAGA           
A/barn_swallow/Hong_Kong      1  2.31e-05          . ATAGAAAGAAGAAGAAGGAAA           
A/ck/Indonesia/072/10         1  2.31e-05          . AAGGAGGGAAGAAGAAAAAAG           
A/chicken/Yangon/1023/20      1  2.51e-05          . AGAGAGAAAGGAAGAAGAAAA           
A/chicken/Vietnam/NCVD01      1  2.94e-05          . AGAGAGGGAGGAAGAAGGAGA           
A/Egypt/4822NAMRU3/2009       1  4.03e-05          . GGAAAGAGTAGAAGAAAAAAG           
A/chicken/Korea/ES/03         1  5.89e-05          . AGAGAGAAAAGAAAAAAGAGA           
A/duck/Viet_Nam/TG2401/2      1  6.33e-05          . AGAGAGAGAAGGAAAAAGAGA           
A/whitefaced_whistling_d      1  1.11e-04          . AAAGAAAAAAGAAGAAAGAAG           
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/great_cormorant/Tibet/          3.1e-09  [2]
A/chicken/Shan/2626/2007          1.8e-08  [2]
A/duck/Vietnam/OIE1287/2          3.1e-08  [2]
A/muscovy_duck/Jakarta/S          5.6e-08  [2]
A/Vietnam/UT3030/2003             5.6e-08  [2]
A/chicken/Magelang/BBVW6          7.7e-08  [2]
A/chicken/Vietnam/NCVD19          7.7e-08  [2]
A/duck/Bac_Lieu/1213/200          9.2e-08  [2]
A/chicken/Sharkia/CAI41/            1e-07  [2]
A/chicken/Tabanan/BBVD14          2.1e-07  [2]
A/duck/Jiangxi/80/2005            2.1e-07  [2]
A/chicken/Badung/BBVD302          2.2e-07  [2]
A/chicken/Banten/PdglKas          2.5e-07  [2]
A/o.bill_stork/Thailand/          2.5e-07  [2]
A/chicken/Bangladesh/150          3.1e-07  [2]
A/chicken/Yangon/182/201          3.1e-07  [2]
A/chicken/Shandong/A1/20          3.1e-07  [2]
A/duck/Qalubia/CAI11/201          3.9e-07  [2]
A/Indonesia/UT3006/2005           3.9e-07  [2]
A/goose/Fujian/bb/2003            3.9e-07  [2]
A/environment/Thailand/I          4.8e-07  [2]
A/chicken/EastKalimantan          4.8e-07  [2]
A/swine/NorthSumatra/UT6          4.8e-07  [2]
A/duck/Cao_Bang/43/2007           5.5e-07  [2]
A/muscovy_duck/Vietnam/N          6.2e-07  [2]
A/Indonesia/NIHRD12379/2          6.2e-07  [2]
A/Egypt/321NAMRU3/2007            6.2e-07  [2]
A/chicken/India/81766/20          7.1e-07  [2]
A/chicken/Bangladesh/967          7.1e-07  [2]
A/chicken/Nepal/T1P/12            7.1e-07  [2]
A/Thailand/WRAIR1720H/20          7.1e-07  [2]
A/goose/Guiyang/337/2006          7.9e-07  [2]
A/Muscovy_duck/Ca_Mau/11          7.9e-07  [2]
A/owstons_civet/VietNam/          8.8e-07  [2]
A/chicken/Bangladesh/152          1.2e-06  [2]
A/chicken/Liaoning/23/20          1.2e-06  [2]
A/condor/Guangdong/139/2          1.2e-06  [2]
A/muscovy_duck/Vietnam/L          1.2e-06  [2]
A/chicken/Hebei/326/2005          1.3e-06  [2]
A/chicken/Inhu/BPPVRII/2          1.3e-06  [2]
A/chicken/WestBengal/239          1.5e-06  [2]
A/bird/Turkey/Unye_ist06          1.5e-06  [2]
A/chicken/Sheny/0606/200          1.7e-06  [2]
A/chicken/Miyazaki/T10/2          1.7e-06  [2]
A/duck/Guangxi/668/2004           1.7e-06  [2]
A/Cambodia/W0526301/2012          1.9e-06  [2]
A/chicken/Egypt/11VIR445          1.9e-06  [2]
A/chicken/Egypt/113Q/201          1.9e-06  [2]
A/Hubei/1/2010                    1.9e-06  [2]
A/duck/Vietnam/NCVD1463/          1.9e-06  [2]
A/chicken/Shandong/A10/2          1.9e-06  [2]
A/chicken/Cambodia/67F1/          2.1e-06  [2]
A/chicken/Liaoning/A1/20          2.1e-06  [2]
A/chicken/Egypt/1158SF/2          2.1e-06  [2]
A/Shandong/1/2009                 2.3e-06  [2]
A/chicken/Egypt/1085/201          2.6e-06  [2]
A/chicken/Hebei/A8/2009           2.6e-06  [2]
A/chicken/CentralJava/UT          2.6e-06  [2]
A_DISC/Cambodia/V0401301          2.9e-06  [2]
A/chicken/Lampung/BPPVRI          2.9e-06  [2]
A/chicken/Vietnam/NCVD40          3.3e-06  [2]
A/duck/Vietnam/NCVD366/2          3.3e-06  [2]
A/duck/Yunnan/47/2006             3.3e-06  [2]
A/chicken/Denpasar/BBVD1          3.6e-06  [2]
A/Hunan/1/2009                    3.9e-06  [2]
A/chicken/Vietnam/NCVD09          4.4e-06  [2]
A/duck/Guangxi/951/2005           5.4e-06  [2]
A/environment/Bangladesh            6e-06  [2]
A/environment/ChangSha/2            6e-06  [2]
A/chicken/India/241272/2            6e-06  [2]
A/quail/Thanatpin/2283/2          6.6e-06  [2]
A/chicken/Sikkim/151466/          6.6e-06  [2]
A/chicken/Bangladesh/830          6.6e-06  [2]
A/chicken/Shandong/A5/20          7.3e-06  [2]
A/domestic_goose/Hong_Ko          8.8e-06  [2]
A/chicken/Egypt/10512AG/          9.6e-06  [2]
A/duck/Guangxi/13/2004            9.6e-06  [2]
A/Vietnam/UT30259/2004            9.6e-06  [2]
A/spurwinged_goose/Niger          1.2e-05  [2]
A/chicken/Vietnam/NCVD18          1.3e-05  [2]
A/duck/Vietnam/NCVD1026/          1.3e-05  [2]
A/chicken/WestJava/SmiAc          1.3e-05  [2]
A/Vietnam/HN36250/2010            1.5e-05  [2]
A/chicken/Vietnam/NCVD40          1.7e-05  [2]
A/duck/Vietnam/NCVD422/2            2e-05  [2]
A/barn_swallow/Hong_Kong          2.3e-05  [2]
A/ck/Indonesia/072/10             2.3e-05  [2]
A/chicken/Yangon/1023/20          2.5e-05  [2]
A/chicken/Vietnam/NCVD01          2.9e-05  [2]
A/Egypt/4822NAMRU3/2009             4e-05  [2]
A/chicken/Korea/ES/03             5.9e-05  [2]
A/duck/Viet_Nam/TG2401/2          6.3e-05  [2]
A/whitefaced_whistling_d          0.00011  [2]
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 2 width=21 seqs=93
A/great_cormorant/Tibet/ (    1) GGARAGAGAAGAAGAAAAAAG  1 
A/chicken/Shan/2626/2007 (    1) AGAGAGAGAAGAAGAAAAAAG  1 
A/duck/Vietnam/OIE1287/2 (    1) AGAGAGAGAAGAAGAAAAAGG  1 
A/muscovy_duck/Jakarta/S (    1) AGAGAGAGCAGAAGAAAAAAG  1 
A/Vietnam/UT3030/2003    (    1) AGAGAGAGAAGAAGAAAAAAA  1 
A/chicken/Magelang/BBVW6 (    1) AGAGAGAGCAGAAGAAAAAGG  1 
A/chicken/Vietnam/NCVD19 (    1) AGAGAGAGAAGAAGAAAAAGA  1 
A/duck/Bac_Lieu/1213/200 (    1) AGAGAGGGAAGAAGAAAAAAG  1 
A/chicken/Sharkia/CAI41/ (    1) GGAGAGAGAAGAAGAAAAAAG  1 
A/chicken/Tabanan/BBVD14 (    1) AGAGAGAGAAGAAGAAAGAAG  1 
A/duck/Jiangxi/80/2005   (    1) AGAGAAAGAAGAAGAAAAAAG  1 
A/chicken/Badung/BBVD302 (    1) ATAGAGAGAAGAAGAAAAAAG  1 
A/chicken/Banten/PdglKas (    1) AGAGAGAGGAGAAGAAAAAAG  1 
A/o.bill_stork/Thailand/ (    1) AGAGAGAGAAGACGAAAAAAG  1 
A/chicken/Bangladesh/150 (    1) GGAGAGAGAAGAAGAAAAAGA  1 
A/chicken/Yangon/182/201 (    1) AGAGAGAGAAGAAGAAGAAAA  1 
A/chicken/Shandong/A1/20 (    1) AGAGAAAGAAGAAGAAAAAGG  1 
A/duck/Qalubia/CAI11/201 (    1) GGAGAGGGAAGAAGAAAAAAG  1 
A/Indonesia/UT3006/2005  (    1) AGAGAAAGCAGAAGAAAAAAG  1 
A/goose/Fujian/bb/2003   (    1) AGAGAGAGAAGAAGGAAAAAG  1 
A/environment/Thailand/I (    1) AGAGAGAGAGGAAGAAAAAAG  1 
A/chicken/EastKalimantan (    1) AGAGAGAGTAGAAGAAAAAAG  1 
A/swine/NorthSumatra/UT6 (    1) AGGGAGAGAAGAAGAAAAAAG  1 
A/duck/Cao_Bang/43/2007  (    1) AGAGAAAGAAGAAGAAAAAGA  1 
A/muscovy_duck/Vietnam/N (    1) AGAGAAGGAAGAAGAAAAAAG  1 
A/Indonesia/NIHRD12379/2 (    1) AGAGAGAGCAGAAGGAAAAAG  1 
A/Egypt/321NAMRU3/2007   (    1) GGAGAGAGAAGAAGAAGAAAG  1 
A/chicken/India/81766/20 (    1) GGAGAGAGAAGAAGAAAGAAG  1 
A/chicken/Bangladesh/967 (    1) GGAGAAAGAAGAAGAAAAAAG  1 
A/chicken/Nepal/T1P/12   (    1) AGAGAGAGGAGAAGAAAAAGA  1 
A/Thailand/WRAIR1720H/20 (    1) AGAGAGAAAAGAAGAAAAAAG  1 
A/goose/Guiyang/337/2006 (    1) AGAGAGAGAAGGAGAAAAAAG  1 
A/Muscovy_duck/Ca_Mau/11 (    1) AGAGAGGGGAGAAGAAAAAAG  1 
A/owstons_civet/VietNam/ (    1) AGAGAGAGAAGAAGGAAAAGA  1 
A/chicken/Bangladesh/152 (    1) AGGGAGAGAAGAAGAAAAAGA  1 
A/chicken/Liaoning/23/20 (    1) GGAGAGAGAAGAAGGAAAAAG  1 
A/condor/Guangdong/139/2 (    1) AGAGGGAGAAGAAGAAAAAAG  1 
A/muscovy_duck/Vietnam/L (    1) ATAGAGAGAAGAAGAAGAAAG  1 
A/chicken/Hebei/326/2005 (    1) AGAGAGGGAGGAAGAAAAAAG  1 
A/chicken/Inhu/BPPVRII/2 (    1) AGGGAGGGAAGAAGAAAAAAG  1 
A/chicken/WestBengal/239 (    1) GGAGAGAGGAGAAGAAAAAAA  1 
A/bird/Turkey/Unye_ist06 (    1) GGGGAGAGAAGAAGAAAAAAG  1 
A/chicken/Sheny/0606/200 (    1) AGAGAGGGAAGAAGGAAAAAA  1 
A/chicken/Miyazaki/T10/2 (    1) AGAGAGAAAAGAAGAAAAAGA  1 
A/duck/Guangxi/668/2004  (    1) AGAGAGATAAGAAGAAAAAAG  1 
A/Cambodia/W0526301/2012 (    1) AGAGAGGAAAGAAGAAAAAAG  1 
A/chicken/Egypt/11VIR445 (    1) GGAGAGGGAAGAAGAAAGAAG  1 
A/chicken/Egypt/113Q/201 (    1) GGAGAAGGAAGAAGAAAAAAG  1 
A/Hubei/1/2010           (    1) AGAGAGAGAAGGAGAAAAAGA  1 
A/duck/Vietnam/NCVD1463/ (    1) ATAGAGAGAAGAAGAAGAAAA  1 
A/chicken/Shandong/A10/2 (    1) AGAGGGAGAAGAAGAAAAAAA  1 
A/chicken/Cambodia/67F1/ (    1) AGAGAGGGAAGGAGAAAAAAG  1 
A/chicken/Liaoning/A1/20 (    1) AGAGAGGGAGGAAGAAAAAAA  1 
A/chicken/Egypt/1158SF/2 (    1) GGAGAGAAAAGAAGAAAAAAG  1 
A/Shandong/1/2009        (    1) AGAGAAAGAAGAAGAAGAAGA  1 
A/chicken/Egypt/1085/201 (    1) GGAGAGGGAAGAAGAAGAAAA  1 
A/chicken/Hebei/A8/2009  (    1) AGAGGGAGAAGAAGAAAAAGA  1 
A/chicken/CentralJava/UT (    1) AGAGAGAGAAGAAAAAAAAGA  1 
A_DISC/Cambodia/V0401301 (    1) AGAGTGGGAAGAAGAAAAAAG  1 
A/chicken/Lampung/BPPVRI (    1) AGAGAAAGCAGAAGGAAAAAG  1 
A/chicken/Vietnam/NCVD40 (    1) AGAGAAAGGAGAAGAAAAAGA  1 
A/duck/Vietnam/NCVD366/2 (    1) AGAGATGGAAGAAGAAAAAAG  1 
A/duck/Yunnan/47/2006    (    1) AGAAAGAGAAGAAGAAAAAAG  1 
A/chicken/Denpasar/BBVD1 (    1) AGAGAGAGAAGAAGAGAAAAG  1 
A/Hunan/1/2009           (    1) AGAGAAAGAAGAAGGAAAAGA  1 
A/chicken/Vietnam/NCVD09 (    1) ATAGAGGGAAGAAGAAGAAAA  1 
A/duck/Guangxi/951/2005  (    1) AGTGAAAGAAGAAGAAAAAGA  1 
A/environment/Bangladesh (    1) AGGGAGAGGAGAAGAAAAAGA  1 
A/environment/ChangSha/2 (    1) AGAGAGAGAAGAGGAAAAAGA  1 
A/chicken/India/241272/2 (    1) GGAGAGAGGAGAAGAAAGAAA  1 
A/quail/Thanatpin/2283/2 (    1) AGAGAAAAAAGAAGAAAAAGA  1 
A/chicken/Sikkim/151466/ (    1) GGTGAGAGAAGAAGAAAGAAG  1 
A/chicken/Bangladesh/830 (    1) GGAGAGAGAAGAAAAAAAAGA  1 
A/chicken/Shandong/A5/20 (    1) AGAGAGGGAGGAAGAAGAAAA  1 
A/domestic_goose/Hong_Ko (    1) ATAGAGAGGAGAAGAAGAAAA  1 
A/chicken/Egypt/10512AG/ (    1) GAAGAGGGAAGAAGAAAAAAG  1 
A/duck/Guangxi/13/2004   (    1) AGAGAAAGAAGAAAAAAAAGA  1 
A/Vietnam/UT30259/2004   (    1) AGAGAGAGAAGAAAAAAGAGA  1 
A/spurwinged_goose/Niger (    1) AGAGAAAAAAGAAGAAAGAAG  1 
A/chicken/Vietnam/NCVD18 (    1) AAAGAAAGAAGAAGAAAAAGA  1 
A/duck/Vietnam/NCVD1026/ (    1) ATAGAGAGAGGAAGAAGAAAA  1 
A/chicken/WestJava/SmiAc (    1) AGAGAGAGCAGACGTAAAAAA  1 
A/Vietnam/HN36250/2010   (    1) AGAGAAAAAAGAAGAAGAAAA  1 
A/chicken/Vietnam/NCVD40 (    1) AGAGAAAGGAGAAGGAAAAGA  1 
A/duck/Vietnam/NCVD422/2 (    1) AGGGAAAGGAGAAGAAAAAGA  1 
A/barn_swallow/Hong_Kong (    1) ATAGAAAGAAGAAGAAGGAAA  1 
A/ck/Indonesia/072/10    (    1) AAGGAGGGAAGAAGAAAAAAG  1 
A/chicken/Yangon/1023/20 (    1) AGAGAGAAAGGAAGAAGAAAA  1 
A/chicken/Vietnam/NCVD01 (    1) AGAGAGGGAGGAAGAAGGAGA  1 
A/Egypt/4822NAMRU3/2009  (    1) GGAAAGAGTAGAAGAAAAAAG  1 
A/chicken/Korea/ES/03    (    1) AGAGAGAAAAGAAAAAAGAGA  1 
A/duck/Viet_Nam/TG2401/2 (    1) AGAGAGAGAAGGAAAAAGAGA  1 
A/whitefaced_whistling_d (    1) AAAGAAAAAAGAAGAAAGAAG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 253 bayes= -2.7879 E= 4.5e-207 
    72   -749   -249    -50    -72    -70   -114    -39   -227     29    -84   -137     67    -22   -279    310   -719    136   -318   -223 
  -344   -673     49    210     76    140     95    123     55    161     75    116    181    151    -46    411    -81    242   -130    -31 
    90   -670   -203     16    -12   -213    -67     36   -169     94     -6    -67    132     46   -221    393   -243    218   -277   -173 
  -444   -670    187    339    169    151    216    216    189    242    164    241    247    252    316    445   -623    286    -13     84 
    98   -671   -204     15    -12   -331    -68     36   -169     94     -6    -68    131     45   -222    392   -334    217   -277   -173 
  -108   -673   -166     37     -7    119    -51     40   -141     96     -2    -46    134     53   -203    392   -335    216   -264   -160 
    70   -749   -249    -50    -72    -63   -114    -39   -227     29    -84   -137     67    -22   -279    310   -719    136   -318   -223 
  -223   -672     58    219     82    140    103    129     64    166     80    124    185    157    -38    413   -345    245   -123    -24 
    74      5   -200     21     -6   -163    -64     43   -164    100      0    -63    136     50   -216    398   -243    224   -273   -168 
    94   -754   -252    -54    -75   -213   -117    -43   -231     25    -89   -142     63    -26   -282    305   -724    131   -320   -226 
 -1220  -1064   -309   -185   -204    159   -192   -270   -327   -131   -355   -312   -101   -197   -390   -105  -1086   -214   -381   -314 
    99   -759   -254    -57    -78   -293   -119    -48   -233     22    -93   -146     60    -30   -285    300   -729    126   -322   -228 
   100   -150   -207     12    -15   -476    -70     33   -172     91    -10    -72    128     42   -224    388   -643    213   -279   -175 
  -294   -754     33    188     41    148     74     81     36    119     29     90    133    115    -69    337   -716    174   -150    -55 
    90   -671   -204     15    -12   -194    -68     35   -170     93     -7    -67    132     45   -222    393   -334    217   -278   -173 
   104   -775   -262    -69    -89   -485   -127    -62   -244     10   -109   -160     48    -43   -296    283   -746    109   -329   -237 
    82   -750   -250    -51    -72   -114   -115    -40   -228     28    -85   -138     67    -23   -280    309   -720    135   -318   -224 
    85   -751   -250    -51    -73   -136   -115    -41   -228     27    -86   -139     66    -23   -280    309   -721    134   -319   -224 
   106   -975   -324   -187   -188  -1037   -192   -227   -336   -107   -299   -307    -74   -175   -389     40   -969   -109   -380   -309 
    52   -750   -249    -50    -72    -10   -115    -40   -228     28    -85   -138     67    -22   -279    310   -719    135   -318   -223 
    -6   -756   -252    -55    -77     69   -118    -45   -232     23    -91   -143     62    -28   -284    303   -726    129   -321   -227 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 93 E= 4.5e-207 
 0.795699  0.000000  0.000000  0.000000  0.000000  0.204301  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.043011  0.000000  0.000000  0.000000  0.000000  0.881720  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.075269  0.000000  0.000000  0.000000 
 0.903226  0.000000  0.000000  0.000000  0.000000  0.075269  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021505  0.000000  0.000000  0.000000 
 0.021505  0.000000  0.000000  0.000000  0.000000  0.967742  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.010753  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.956989  0.000000  0.000000  0.000000  0.000000  0.032258  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.010753  0.000000  0.000000  0.000000 
 0.225806  0.000000  0.000000  0.000000  0.000000  0.763441  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.010753  0.000000  0.000000  0.000000 
 0.784946  0.000000  0.000000  0.000000  0.000000  0.215054  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.107527  0.000000  0.000000  0.000000  0.000000  0.881720  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.010753  0.000000  0.000000  0.000000 
 0.806452  0.064516  0.000000  0.000000  0.000000  0.107527  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.021505  0.000000  0.000000  0.000000 
 0.924731  0.000000  0.000000  0.000000  0.000000  0.075269  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.956989  0.000000  0.000000  0.000000  0.000000  0.043011  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.967742  0.021505  0.000000  0.000000  0.000000  0.010753  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.064516  0.000000  0.000000  0.000000  0.000000  0.935484  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.903226  0.000000  0.000000  0.000000  0.000000  0.086022  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.010753  0.000000  0.000000  0.000000 
 0.989247  0.000000  0.000000  0.000000  0.000000  0.010753  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.849462  0.000000  0.000000  0.000000  0.000000  0.150538  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.870968  0.000000  0.000000  0.000000  0.000000  0.129032  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.688172  0.000000  0.000000  0.000000  0.000000  0.311828  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.462366  0.000000  0.000000  0.000000  0.000000  0.537634  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 regular expression
--------------------------------------------------------------------------------
[AG]GAGA[GA][AG]GAAGAAGAAAAA[AG][GA]
--------------------------------------------------------------------------------




Time 56.02 secs.

********************************************************************************


********************************************************************************
MOTIF  3	width =   15   sites =  25   llr = 475   E-value = 2.5e-074
********************************************************************************
--------------------------------------------------------------------------------
	Motif 3 Description
--------------------------------------------------------------------------------
Simplified        A  ::9:3::24::17:a
pos.-specific     C  8:::::3:::9::1:
probability       D  :::::::::::::::
matrix            E  :::::::::::::::
                  F  :::::::::::::::
                  G  ::1::3786a:::::
                  H  :::::::::::::::
                  I  :::::::::::::::
                  K  :::::::::::::::
                  L  :::::::::::::::
                  M  :::::::::::::::
                  N  :::::::::::::::
                  P  :::::::::::::::
                  Q  :::::::::::::::
                  R  :::::::::::::::
                  S  :::::::::::::::
                  T  2a:a77::::1939:
                  V  :::::::::::::::
                  W  :::::::::::::::
                  Y  :::::::::::::::

         bits   12.4                
                11.1                
                 9.9                
                 8.7                
Relative         7.4                
Entropy          6.2                
(27.4 bits)      5.0                
                 3.7 *         *    
                 2.5 ** *      ** * 
                 1.2 ******** ******
                 0.0 ---------------

Multilevel           CTATTTGGGGCTATA
consensus                AGCAA   T  
sequence                            
                                    
                                    
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                 Site    
-------------             ----- ---------            ---------------
A/chicken/Bangladesh/FD(      1  4.15e-11          . CTATTTGGGGCTATA GCAGGT    
A/tern/South_Africa/1959      4  4.15e-11        GGT CTATTTGGGGCTATA GCA       
A/mallard/Netherlands/3/      4  4.15e-11        GGA CTATTTGGGGCTATA GCA       
A/duck/Primorie/2633/200      1  4.15e-11          . CTATTTGGGGCTATA GCAGGC    
A/wild_bird_feces/Cheons      7  4.15e-11     AGAGGA CTATTTGGGGCTATA           
A/chicken/Bangladesh/11r      1  8.33e-11          . CTATTTGGAGCTATA GCAGGT    
A/turkey/Egypt/091QNLQP/      1  8.33e-11          . CTATTTGGAGCTATA GCAGGG    
A/duck/Hong_Kong/312/197      1  8.33e-11          . CTATTTGGAGCTATA GCAGGC    
A/chicken/Bangladesh/11r      4  8.33e-11        GGA CTATTTGGAGCTATA GCA       
A/chicken/Turkey/Misinli      7  8.33e-11     AGAGGA CTATTTGGAGCTATA           
A/wild_bird_feces/Byeong      4  6.63e-10        GGA CTATTTGGGGCCATA GCA       
A/ostrich/South_Africa/A      4  7.90e-10        GGA TTATTTGGGGCTATA GCA       
A/whooper_swan/Hokkaido/      7  8.51e-10     AGAGGA CTGTTTGGAGCTATA           
A/chicken/Cambodia/TLC2/      4  1.22e-09        GGA TTATTTGGAGCTATA GCA       
A/chicken/Cambodia/013LC      7  1.22e-09     AGGGGA TTATTTGGAGCTATA           
A/avian/New_York/Sg00387      4  3.23e-09        GGC CTATTTGGAGCAATA GCA       
A/avian/New_York/Sg00372      1  3.23e-09          . CTATTTGGAGCAATA GCAGGA    
A/chicken/Egypt/1219s/20      5  4.76e-09       GGAG CTATAGCAGGCTTTA TA        
A/chicken/Egypt/128s/201      2  4.76e-09          G CTATAGCAGGCTTTA TAGAG     
A/chicken/Bangladesh/11r      1  7.12e-09          . TTGTTTGGAGCTATA GCAGGG    
A/duck/Primorie/2621/200      2  1.97e-08          G CTATAGCAGGCTTCA TAGAA     
A/turkey/England/N28/73|      2  2.10e-08          G CTATAGCGGGTTTTA TAGAA     
A/chicken/Egypt/125s/201      5  5.87e-08       GGAG CTATAGCAGGTTTTA TA        
A/chicken/Egypt/398252/2      2  5.87e-08          G CTATAGCAGGTTTTA TAGAG     
A/chicken/Italy/9097/199      2  1.05e-07          G CCATAGCAGGCTTCA TAGAG     
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/chicken/Bangladesh/FD(          4.2e-11  [3]_6
A/tern/South_Africa/1959          4.2e-11  3_[3]_3
A/mallard/Netherlands/3/          4.2e-11  3_[3]_3
A/duck/Primorie/2633/200          4.2e-11  [3]_6
A/wild_bird_feces/Cheons          4.2e-11  6_[3]
A/chicken/Bangladesh/11r          8.3e-11  [3]_6
A/turkey/Egypt/091QNLQP/          8.3e-11  [3]_6
A/duck/Hong_Kong/312/197          8.3e-11  [3]_6
A/chicken/Bangladesh/11r          8.3e-11  3_[3]_3
A/chicken/Turkey/Misinli          8.3e-11  6_[3]
A/wild_bird_feces/Byeong          6.6e-10  3_[3]_3
A/ostrich/South_Africa/A          7.9e-10  3_[3]_3
A/whooper_swan/Hokkaido/          8.5e-10  6_[3]
A/chicken/Cambodia/TLC2/          1.2e-09  3_[3]_3
A/chicken/Cambodia/013LC          1.2e-09  6_[3]
A/avian/New_York/Sg00387          3.2e-09  3_[3]_3
A/avian/New_York/Sg00372          3.2e-09  [3]_6
A/chicken/Egypt/1219s/20          4.8e-09  4_[3]_2
A/chicken/Egypt/128s/201          4.8e-09  1_[3]_5
A/chicken/Bangladesh/11r          7.1e-09  [3]_6
A/duck/Primorie/2621/200            2e-08  1_[3]_5
A/turkey/England/N28/73|          2.1e-08  1_[3]_5
A/chicken/Egypt/125s/201          5.9e-08  4_[3]_2
A/chicken/Egypt/398252/2          5.9e-08  1_[3]_5
A/chicken/Italy/9097/199          1.1e-07  1_[3]_5
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 3 width=15 seqs=25
A/chicken/Bangladesh/FD( (    1) CTATTTGGGGCTATA  1 
A/tern/South_Africa/1959 (    4) CTATTTGGGGCTATA  1 
A/mallard/Netherlands/3/ (    4) CTATTTGGGGCTATA  1 
A/duck/Primorie/2633/200 (    1) CTATTTGGGGCTATA  1 
A/wild_bird_feces/Cheons (    7) CTATTTGGGGCTATA  1 
A/chicken/Bangladesh/11r (    1) CTATTTGGAGCTATA  1 
A/turkey/Egypt/091QNLQP/ (    1) CTATTTGGAGCTATA  1 
A/duck/Hong_Kong/312/197 (    1) CTATTTGGAGCTATA  1 
A/chicken/Bangladesh/11r (    4) CTATTTGGAGCTATA  1 
A/chicken/Turkey/Misinli (    7) CTATTTGGAGCTATA  1 
A/wild_bird_feces/Byeong (    4) CTATTTGGGGCCATA  1 
A/ostrich/South_Africa/A (    4) TTATTTGGGGCTATA  1 
A/whooper_swan/Hokkaido/ (    7) CTGTTTGGAGCTATA  1 
A/chicken/Cambodia/TLC2/ (    4) TTATTTGGAGCTATA  1 
A/chicken/Cambodia/013LC (    7) TTATTTGGAGCTATA  1 
A/avian/New_York/Sg00387 (    4) CTATTTGGAGCAATA  1 
A/avian/New_York/Sg00372 (    1) CTATTTGGAGCAATA  1 
A/chicken/Egypt/1219s/20 (    5) CTATAGCAGGCTTTA  1 
A/chicken/Egypt/128s/201 (    2) CTATAGCAGGCTTTA  1 
A/chicken/Bangladesh/11r (    1) TTGTTTGGAGCTATA  1 
A/duck/Primorie/2621/200 (    2) CTATAGCAGGCTTCA  1 
A/turkey/England/N28/73| (    2) CTATAGCGGGTTTTA  1 
A/chicken/Egypt/125s/201 (    5) CTATAGCAGGTTTTA  1 
A/chicken/Egypt/398252/2 (    2) CTATAGCAGGTTTTA  1 
A/chicken/Italy/9097/199 (    2) CCATAGCAGGCTTCA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 15 n= 1771 bayes= 7.27007 E= 2.5e-074 
  -645    376    -59    141    129   -726     76    206    -39    233    103     17    205    135    -98    412     25    289   -134    -19 
  -618    -75     62    244    220   -712    186    351    146    325    268    227    269    290     36    614    291    420    -37     67 
    89   -475     23    253    219   -208    148    280     77    338    228    123    294    244     -3    579   -466    451    -48     53 
  -910   -801   -108     32     30   -879     20     64    -91    115    -28    -45    112     53   -168    292    302    126   -174    -92 
   -78   -504     -6    202    174   -601    124    246     37    281    186    132    303    232    -31    573    250    397    -90     16 
  -650   -639    -37    120     81    -27     66    112    -41    174     50     50    201    131   -117    429    253    254   -150    -52 
  -712    215    -72     83     52    111     39     51    -76    136    -11    -16    167     82   -143    352   -673    189   -161    -72 
  -116   -537    135    300    189    118    194    232    141    278    184    208    304    257     47    538   -502    367    -28     71 
   -14   -524    -28    175    145     71     99    186     -6    247    142     93    286    200    -62    539   -492    363   -112    -10 
  -729   -729    104    252    116    157    152    135    103    189     78    150    202    178      0    355   -699    203    -65     23 
  -649    389     31    275    239   -749    174    337     71    349    240     92    235    218     11    399   -104    337    -71     60 
  -252    -76     84    282    251   -605    211    372    167    358    300    255    333    326     66    662    276    468    -14     90 
    55   -499    -21    194    166   -592    111    222     12    274    169    109    305    221    -44    564    115    394    -98      8 
  -618     25     44    227    204   -710    169    331    124    309    246    204    260    271     17    594    286    403    -52     53 
   104   -669    -98     78     66   -755     33     86    -85    164     19    -39    169     86   -147    374   -655    233   -159    -72 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 15 nsites= 25 E= 2.5e-074 
 0.000000  0.840000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.160000  0.000000  0.000000  0.000000 
 0.000000  0.040000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.960000  0.000000  0.000000  0.000000 
 0.920000  0.000000  0.000000  0.000000  0.000000  0.080000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.280000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.720000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.280000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.720000  0.000000  0.000000  0.000000 
 0.000000  0.280000  0.000000  0.000000  0.000000  0.720000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.240000  0.000000  0.000000  0.000000  0.000000  0.760000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.440000  0.000000  0.000000  0.000000  0.000000  0.560000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.880000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.120000  0.000000  0.000000  0.000000 
 0.080000  0.040000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.880000  0.000000  0.000000  0.000000 
 0.720000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.280000  0.000000  0.000000  0.000000 
 0.000000  0.080000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.920000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 regular expression
--------------------------------------------------------------------------------
CTAT[TA][TG][GC][GA][GA]GCT[AT]TA
--------------------------------------------------------------------------------




Time 56.86 secs.

********************************************************************************


********************************************************************************
MOTIF  4	width =   15   sites =  18   llr = 248   E-value = 1.6e-011
********************************************************************************
--------------------------------------------------------------------------------
	Motif 4 Description
--------------------------------------------------------------------------------
Simplified        A  a:7:76:36::7:::
pos.-specific     C  ::::::::1::::::
probability       D  :::::::::::::::
matrix            E  :::::::::::::::
                  F  :::::::::::::::
                  G  ::3a:4a71aa::aa
                  H  :::::::::::::::
                  I  :::::::::::::::
                  K  :::::::::::::::
                  L  :::::::::::::::
                  M  :::::::::::::::
                  N  :::::::::::::::
                  P  :::::::::::::::
                  Q  :::::::::::::::
                  R  :::::::::::::::
                  S  :::::::::::::::
                  T  :a::3:::3::3a::
                  V  :::::::::::::::
                  W  :::::::::::::::
                  Y  :::::::::::::::

         bits   12.4                
                11.1                
                 9.9                
                 8.7                
Relative         7.4                
Entropy          6.2                
(19.9 bits)      5.0                
                 3.7                
                 2.5  *          *  
                 1.2 ** ** *  ******
                 0.0 ---------------

Multilevel           ATAGAAGGAGGATGG
consensus              G TG AT  T   
sequence                            
                                    
                                    
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                 Site    
-------------             ----- ---------            ---------------
A/VietNam/HN31413/2008        1  1.21e-07          . ATAGAGGGTGGATGG CAGGGA    
A/Muscovy_Duck/Vietnam/1      1  2.36e-07          . ATAGAGGGCGGATGG CAGGGA    
A/chicken/Vietnam/NCVD11      4  3.75e-07        TTT ATAGAAGGAGGATGG CAG       
A/environment/Bangladesh      1  3.75e-07          . ATAGAAGGAGGATGG CAGGGA    
A/chicken/Queretaro/7653      4  3.75e-07        TTC ATAGAAGGAGGATGG CAA       
A_GenBank/heron/Cambodia      7  3.75e-07     GGGTTT ATAGAAGGAGGATGG           
A/heron/Cambodia/TM068/2      1  3.75e-07          . ATAGAAGGAGGATGG CAGGGG    
A/Hong_Kong/7032/2012         4  4.39e-07        TTT ATAGAGGGAGGATGG CAG       
A/duck/Vietnam/NCVD1161/      4  4.39e-07        TTT ATAGAGGGAGGATGG CAA       
A/pigeon/Egypt/SHAH5803/      1  4.39e-07          . ATAGAGGGAGGATGG CAGGGA    
A/environment/Bangladesh      1  4.39e-07          . ATAGAGGGAGGATGG CAGGGG    
A/chicken/Egypt/39825/20      7  4.39e-07     GGTTTT ATAGAGGGAGGATGG           
A/chicken/TanseMyanmar/S      4  6.25e-07        GGA ATGGTAGATGGTTGG TAT       
A/Egypt/2786NAMRU3/2006       7  6.25e-07     CAGGGA ATGGTAGATGGTTGG           
A/chicken/BacLieuVietnam      4  6.25e-07        GGG ATGGTAGATGGTTGG TAT       
A/poultry/Egypt/398256/2      1  6.25e-07          . ATGGTAGATGGTTGG TATGGG    
A/chicken/Nepal/354/2010      4  7.69e-07        GGA ATGGTAGACGGTTGG TAT       
A/Indonesia/625/2006          4  1.47e-06        TTT ATAGAAGGGGGATGG CAG       
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/VietNam/HN31413/2008            1.2e-07  [4]_6
A/Muscovy_Duck/Vietnam/1          2.4e-07  [4]_6
A/chicken/Vietnam/NCVD11          3.7e-07  3_[4]_3
A/environment/Bangladesh          3.7e-07  [4]_6
A/chicken/Queretaro/7653          3.7e-07  3_[4]_3
A_GenBank/heron/Cambodia          3.7e-07  6_[4]
A/heron/Cambodia/TM068/2          3.7e-07  [4]_6
A/Hong_Kong/7032/2012             4.4e-07  3_[4]_3
A/duck/Vietnam/NCVD1161/          4.4e-07  3_[4]_3
A/pigeon/Egypt/SHAH5803/          4.4e-07  [4]_6
A/environment/Bangladesh          4.4e-07  [4]_6
A/chicken/Egypt/39825/20          4.4e-07  6_[4]
A/chicken/TanseMyanmar/S          6.2e-07  3_[4]_3
A/Egypt/2786NAMRU3/2006           6.2e-07  6_[4]
A/chicken/BacLieuVietnam          6.2e-07  3_[4]_3
A/poultry/Egypt/398256/2          6.2e-07  [4]_6
A/chicken/Nepal/354/2010          7.7e-07  3_[4]_3
A/Indonesia/625/2006              1.5e-06  3_[4]_3
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 4 width=15 seqs=18
A/VietNam/HN31413/2008   (    1) ATAGAGGGTGGATGG  1 
A/Muscovy_Duck/Vietnam/1 (    1) ATAGAGGGCGGATGG  1 
A/chicken/Vietnam/NCVD11 (    4) ATAGAAGGAGGATGG  1 
A/environment/Bangladesh (    1) ATAGAAGGAGGATGG  1 
A/chicken/Queretaro/7653 (    4) ATAGAAGGAGGATGG  1 
A_GenBank/heron/Cambodia (    7) ATAGAAGGAGGATGG  1 
A/heron/Cambodia/TM068/2 (    1) ATAGAAGGAGGATGG  1 
A/Hong_Kong/7032/2012    (    4) ATAGAGGGAGGATGG  1 
A/duck/Vietnam/NCVD1161/ (    4) ATAGAGGGAGGATGG  1 
A/pigeon/Egypt/SHAH5803/ (    1) ATAGAGGGAGGATGG  1 
A/environment/Bangladesh (    1) ATAGAGGGAGGATGG  1 
A/chicken/Egypt/39825/20 (    7) ATAGAGGGAGGATGG  1 
A/chicken/TanseMyanmar/S (    4) ATGGTAGATGGTTGG  1 
A/Egypt/2786NAMRU3/2006  (    7) ATGGTAGATGGTTGG  1 
A/chicken/BacLieuVietnam (    4) ATGGTAGATGGTTGG  1 
A/poultry/Egypt/398256/2 (    1) ATGGTAGATGGTTGG  1 
A/chicken/Nepal/354/2010 (    4) ATGGTAGACGGTTGG  1 
A/Indonesia/625/2006     (    4) ATAGAAGGGGGATGG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 15 n= 1771 bayes= 5.89847 E= 1.6e-011 
   103   -568    -19    181    160   -667    110    204     14    270    138     48    237    174    -60    477   -563    356    -81     13 
  -802   -703    -25    128    119   -810    101    195     17    211    105     77    185    158    -75    435    301    255   -102    -11 
    54   -459     35    247    214    -33    160    263     66    322    216    154    340    263      3    602   -431    439    -48     55 
  -637   -650    192    341    193    154    233    222    192    266    167    242    277    262     86    446   -613    291     11    103 
    53   -448     35    253    222   -543    165    284     72    332    227    162    353    273     11    615    111    451    -45     62 
    31   -468     26    232    199     16    151    244     50    304    199    149    339    256     -8    595   -436    421    -61     44 
  -637   -650    192    341    193    154    233    222    192    266    167    242    277    262     86    446   -613    291     11    103 
  -101   -489    172    339    231    111    233    275    178    321    227    247    348    299     85    585   -454    414     10    110 
    18     75     47    272    242   -250    179    299     91    354    251    174    364    289     27    633    108    474    -27     78 
  -637   -650    192    341    193    154    233    222    192    266    167    242    277    262     86    446   -613    291     11    103 
  -637   -650    192    341    193    154    233    222    192    266    167    242    277    262     86    446   -613    291     11    103 
    53   -448     35    253    222   -543    165    284     72    332    227    162    353    273     11    615    111    451    -45     62 
  -802   -703    -25    128    119   -810    101    195     17    211    105     77    185    158    -75    435    301    255   -102    -11 
  -637   -650    192    341    193    154    233    222    192    266    167    242    277    262     86    446   -613    291     11    103 
  -637   -650    192    341    193    154    233    222    192    266    167    242    277    262     86    446   -613    291     11    103 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 15 nsites= 18 E= 1.6e-011 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.722222  0.000000  0.000000  0.000000  0.000000  0.277778  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.722222  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.277778  0.000000  0.000000  0.000000 
 0.611111  0.000000  0.000000  0.000000  0.000000  0.388889  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.277778  0.000000  0.000000  0.000000  0.000000  0.722222  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.555556  0.111111  0.000000  0.000000  0.000000  0.055556  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.277778  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.722222  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.277778  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 regular expression
--------------------------------------------------------------------------------
AT[AG]G[AT][AG]G[GA][AT]GG[AT]TGG
--------------------------------------------------------------------------------




Time 57.67 secs.

********************************************************************************


********************************************************************************
MOTIF  5	width =   14   sites =  12   llr = 196   E-value = 8.3e-010
********************************************************************************
--------------------------------------------------------------------------------
	Motif 5 Description
--------------------------------------------------------------------------------
Simplified        A  :7a1a::81:61::
pos.-specific     C  a2::::713::::3
probability       D  ::::::::::::1:
matrix            E  ::::::::::::::
                  F  ::::::::::::::
                  G  :::2:a3:773:::
                  H  ::::::::::::::
                  I  ::::::::::::::
                  K  ::::::::::::::
                  L  ::::::::::::::
                  M  ::::::::::::::
                  N  ::::::::::::::
                  P  ::::::::::::::
                  Q  ::::::::::::::
                  R  ::::::::::::::
                  S  ::::::::::::::
                  T  :2:8::11:32997
                  V  ::::::::::::::
                  W  ::::::::::::::
                  Y  :::::::::1::::

         bits   12.4               
                11.1               
                 9.9               
                 8.7               
Relative         7.4               
Entropy          6.2               
(23.6 bits)      5.0               
                 3.7 *           * 
                 2.5 *     *    ***
                 1.2 ********** ***
                 0.0 --------------

Multilevel           CAATAGCAGGATTT
consensus                  G CTG  C
sequence                           
                                   
                                   
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                 Site   
-------------             ----- ---------            --------------
A/Chicken/TurkeyEdirne/0      2  1.90e-09          G CCATAGCAGGTTTT ATAGAG    
A/Canada_goose/Alaska//4      5  4.78e-09       GGAG CAATAGCAGGATTT ATA       
A/mallard/Washington/456      8  4.78e-09    TTTGGAG CAATAGCAGGATTT           
A/wild_bird/Wisconsin/43      2  5.66e-09          G CAATAGCAGGATTC ATAGAA    
A/avian/New_York/Sg00377      8  5.66e-09    TTTGGAG CAATAGCAGGATTC           
A/chicken/Egypt/398220/2      8  5.66e-09    TTTGGAG CTATAGCAGGTTTT           
A/chicken/Bangladesh/11r      8  1.10e-08    TTTGGAG CTATAGCAGGGTTT           
A/chicken/Puebla/1458665      5  1.20e-08       GGAG CAATAGCCGGATTC ATA       
A/duck/Bangladesh/5749/1      3  4.54e-08         CA CCATAGTAAYGADC AGGGG     
A/wild_bird_feces/Cheons      5  5.98e-07       GAAA CAAGAGGACTATTT GGG       
A/turkey/MN/40550/1987_H      5  9.56e-07       GAAA CAAGAGGACTGTTT GGA       
A/duck/Korea/GJ54/2004|G      5  2.69e-06       GAAA CAAAAGGTCTATTT GGG       
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/Chicken/TurkeyEdirne/0          1.9e-09  1_[5]_6
A/Canada_goose/Alaska//4          4.8e-09  4_[5]_3
A/mallard/Washington/456          4.8e-09  7_[5]
A/wild_bird/Wisconsin/43          5.7e-09  1_[5]_6
A/avian/New_York/Sg00377          5.7e-09  7_[5]
A/chicken/Egypt/398220/2          5.7e-09  7_[5]
A/chicken/Bangladesh/11r          1.1e-08  7_[5]
A/chicken/Puebla/1458665          1.2e-08  4_[5]_3
A/duck/Bangladesh/5749/1          4.5e-08  2_[5]_5
A/wild_bird_feces/Cheons            6e-07  4_[5]_3
A/turkey/MN/40550/1987_H          9.6e-07  4_[5]_3
A/duck/Korea/GJ54/2004|G          2.7e-06  4_[5]_3
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 5 width=14 seqs=12
A/Chicken/TurkeyEdirne/0 (    2) CCATAGCAGGTTTT  1 
A/Canada_goose/Alaska//4 (    5) CAATAGCAGGATTT  1 
A/mallard/Washington/456 (    8) CAATAGCAGGATTT  1 
A/wild_bird/Wisconsin/43 (    2) CAATAGCAGGATTC  1 
A/avian/New_York/Sg00377 (    8) CAATAGCAGGATTC  1 
A/chicken/Egypt/398220/2 (    8) CTATAGCAGGTTTT  1 
A/chicken/Bangladesh/11r (    8) CTATAGCAGGGTTT  1 
A/chicken/Puebla/1458665 (    5) CAATAGCCGGATTC  1 
A/duck/Bangladesh/5749/1 (    3) CCATAGTAAYGADC  1 
A/wild_bird_feces/Cheons (    5) CAAGAGGACTATTT  1 
A/turkey/MN/40550/1987_H (    5) CAAGAGGACTGTTT  1 
A/duck/Korea/GJ54/2004|G (    5) CAAAAGGTCTATTT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 14 n= 2024 bayes= 8.98014 E= 8.3e-010 
  -651    396     86    340    298   -767    231    401    130    410    306    140    263    270     70    389   -504    373    -26    110 
    43    106    151    393    360   -455    278    435    220    486    375    250    410    376    132    711     14    598     85    189 
    98   -441     91    317    287   -554    215    351    148    408    285    160    320    290     58    604   -449    507     27    127 
  -228   -392    163    357    309   -117    274    404    213    417    341    307    417    383    120    714    249    528     42    152 
    98   -441     91    317    287   -554    215    351    148    408    285    160    320    290     58    604   -449    507     27    127 
  -557   -578    269    419    263    151    306    299    269    336    245    321    344    337    161    525   -538    368     81    175 
  -393    330    123    315    276    -52    231    336    137    384    277    241    407    332     68    665    -55    496      6    122 
    67    -43    230    487    448   -413    349    526    317    581    468    294    398    436    210    762   -126    692    169    270 
  -244    156    218    390    290    101    284    341    228    385    292    300    411    358    137    657   -381    485     61    164 
  -469   -485    325    472    396    112    371    373    318    414    311    390    397    404    201    615     21    458    143    701 
    23   -372    130    350    307    -57    248    367    170    422    317    244    415    353     94    689     31    539     36    144 
  -264   -405    206    397    360   -558    326    499    295    469    418    378    412    440    183    768    274    571     95    201 
  -553   -454    632    449    357   -627    355    498    321    461    418    418    387    454    193    762    276    552     96    211 
  -473    221    124    312    300   -568    248    427    192    414    323    271    368    347     93    670    238    511     31    151 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 14 nsites= 12 E= 8.3e-010 
 0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.666667  0.166667  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.166667  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.083333  0.000000  0.000000  0.000000  0.000000  0.166667  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.750000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.666667  0.000000  0.000000  0.000000  0.250000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.083333  0.000000  0.000000  0.000000 
 0.833333  0.083333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.083333  0.000000  0.000000  0.000000 
 0.083333  0.250000  0.000000  0.000000  0.000000  0.666667  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.666667  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.250000  0.000000  0.000000  0.083333 
 0.583333  0.000000  0.000000  0.000000  0.000000  0.250000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.166667  0.000000  0.000000  0.000000 
 0.083333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.916667  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.083333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.916667  0.000000  0.000000  0.000000 
 0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.666667  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 regular expression
--------------------------------------------------------------------------------
CAATAG[CG]A[GC][GT][AG]TT[TC]
--------------------------------------------------------------------------------




Time 58.49 secs.

********************************************************************************


********************************************************************************
MOTIF  6	width =   21   sites =   4   llr = 106   E-value = 2.1e-004
********************************************************************************
--------------------------------------------------------------------------------
	Motif 6 Description
--------------------------------------------------------------------------------
Simplified        A  ::a::::::a:a:a:::8::a
pos.-specific     C  :a:::3:::::::::::3:::
probability       D  :::::::::::::::::::::
matrix            E  :::::::::::::::::::::
                  F  :::::::::::::::::::::
                  G  a::aa3::::::a:aaa:aa:
                  H  :::::::::::::::::::::
                  I  :::::::::::::::::::::
                  K  :::::::::::::::::::::
                  L  :::::::::::::::::::::
                  M  :::::::::::::::::::::
                  N  :::::::::::::::::::::
                  P  :::::::::::::::::::::
                  Q  :::::::::::::::::::::
                  R  :::::::::::::::::::::
                  S  :::::::::::::::::::::
                  T  :::::5aaa:a::::::::::
                  V  :::::::::::::::::::::
                  W  :::::::::::::::::::::
                  Y  :::::::::::::::::::::

         bits   12.4                      
                11.1                      
                 9.9                      
                 8.7                      
Relative         7.4                      
Entropy          6.2                      
(38.2 bits)      5.0                      
                 3.7  *                   
                 2.5  *    *** *          
                 1.2 *********************
                 0.0 ---------------------

Multilevel           GCAGGTTTTATAGAGGGAGGA
consensus                 C           C   
sequence                  G               
                                          
                                          
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                    Site       
-------------             ----- ---------            ---------------------
A/chicken/Indonesia/SmiW      1  5.44e-12          . GCAGGTTTTATAGAGGGAGGA           
A/chicken/Egypt/10117/20      1  6.47e-12          . GCAGGTTTTATAGAGGGCGGA           
A/turkey/Italy/1980|GQ24      1  7.65e-12          . GCAGGCTTTATAGAGGGAGGA           
A/chicken/Egypt/398214/2      1  2.63e-11          . GCAGGGTTTATAGAGGGAGGA           
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/chicken/Indonesia/SmiW          5.4e-12  [6]
A/chicken/Egypt/10117/20          6.5e-12  [6]
A/turkey/Italy/1980|GQ24          7.6e-12  [6]
A/chicken/Egypt/398214/2          2.6e-11  [6]
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 6 width=21 seqs=4
A/chicken/Indonesia/SmiW (    1) GCAGGTTTTATAGAGGGAGGA  1 
A/chicken/Egypt/10117/20 (    1) GCAGGTTTTATAGAGGGCGGA  1 
A/turkey/Italy/1980|GQ24 (    1) GCAGGCTTTATAGAGGGAGGA  1 
A/chicken/Egypt/398214/2 (    1) GCAGGGTTTATAGAGGGAGGA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 253 bayes= 5.96 E= 2.1e-004 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
  -639    396     94    349    308   -756    240    412    140    420    315    150    272    279     79    401   -494    386    -17    121 
    73   -256    279    533    480   -384    392    565    359    613    494    341    456    479    249    787   -278    716    202    312 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
  -292    122    347    562    501    -98    460    615    424    631    526    464    546    559    300    849    176    692    212    358 
  -458   -371    302    494    448   -550    414    590    392    561    497    458    466    520    270    831    272    643    180    300 
  -458   -371    302    494    448   -550    414    590    392    561    497    458    466    520    270    831    272    643    180    300 
  -458   -371    302    494    448   -550    414    590    392    561    497    458    466    520    270    831    272    643    180    300 
    73   -256    279    533    480   -384    392    565    359    613    494    341    456    479    249    787   -278    716    202    312 
  -458   -371    302    494    448   -550    414    590    392    561    497    458    466    520    270    831    272    643    180    300 
    73   -256    279    533    480   -384    392    565    359    613    494    341    456    479    249    787   -278    716    202    312 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
    73   -256    279    533    480   -384    392    565    359    613    494    341    456    479    249    787   -278    716    202    312 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
    55     34    281    536    499   -365    403    587    369    634    518    351    466    491    261    809   -257    740    218    326 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
    73   -256    279    533    480   -384    392    565    359    613    494    341    456    479    249    787   -278    716    202    312 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 4 E= 2.1e-004 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.250000  0.000000  0.000000  0.000000  0.250000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.750000  0.250000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 regular expression
--------------------------------------------------------------------------------
GCAGG[TCG]TTTATAGAGGG[AC]GGA
--------------------------------------------------------------------------------




Time 59.26 secs.

********************************************************************************


********************************************************************************
MOTIF  7	width =   17   sites =   4   llr = 97   E-value = 6.2e-002
********************************************************************************
--------------------------------------------------------------------------------
	Motif 7 Description
--------------------------------------------------------------------------------
Simplified        A  :a::8::5:::::a:::
pos.-specific     C  :::::8:::::::::a:
probability       D  :::::::::::::::::
matrix            E  :::::::::::::::::
                  F  :::::::::::::::::
                  G  a:aa:::5:::aa:a::
                  H  :::::::::::::::::
                  I  :::::::::::::::::
                  K  :::::::::::::::::
                  L  :::::::::::::::::
                  M  :::::::::::::::::
                  N  :::::::::::::::::
                  P  :::::::::::::::::
                  Q  :::::::::::::::::
                  R  :::::::::::::::::
                  S  :::::::::::::::::
                  T  ::::33a:aaa:::::a
                  V  :::::::::::::::::
                  W  :::::::::::::::::
                  Y  :::::::::::::::::

         bits   12.4                  
                11.1                  
                 9.9                  
                 8.7                  
Relative         7.4                  
Entropy          6.2                  
(34.9 bits)      5.0                  
                 3.7                * 
                 2.5      ** ***    **
                 1.2 ******* *********
                 0.0 -----------------

Multilevel           GAGGACTGTTTGGAGCT
consensus                TT A         
sequence                              
                                      
                                      
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                  Site     
-------------             ----- ---------            -----------------
A/common_magpie/HongKong      5  1.62e-11       AAAA GAGGACTGTTTGGAGCT           
A/Chicken/TurkeyMus/09rs      5  3.22e-11       AAGA GAGGACTATTTGGAGCT           
A/ck/Indonesia/091/10         5  4.14e-11       AAGA GAGGTCTATTTGGAGCT           
A/chicken/Bangladesh/11r      5  6.12e-10       AAAA GAGGATTGTTTGGAGCT           
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/common_magpie/HongKong          1.6e-11  4_[7]
A/Chicken/TurkeyMus/09rs          3.2e-11  4_[7]
A/ck/Indonesia/091/10             4.1e-11  4_[7]
A/chicken/Bangladesh/11r          6.1e-10  4_[7]
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 7 width=17 seqs=4
A/common_magpie/HongKong (    5) GAGGACTGTTTGGAGCT  1 
A/Chicken/TurkeyMus/09rs (    5) GAGGACTATTTGGAGCT  1 
A/ck/Indonesia/091/10    (    5) GAGGTCTATTTGGAGCT  1 
A/chicken/Bangladesh/11r (    5) GAGGATTGTTTGGAGCT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 17 n= 1265 bayes= 8.30035 E= 6.2e-002 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
    73   -256    279    533    480   -384    392    565    359    613    494    341    456    479    249    787   -278    716    202    312 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
    48   -241    309    566    497   -365    422    588    396    632    516    380    496    519    279    809    -13    731    215    332 
  -593    393    110    361    324   -706    253    435    162    441    333    175    296    301     93    459   -298    429      0    142 
  -458   -371    302    494    448   -550    414    590    392    561    497    458    466    520    270    831    272    643    180    300 
   -44   -306    340    542    425     57    409    492    371    539    433    413    506    491    259    761   -280    630    175    291 
  -458   -371    302    494    448   -550    414    590    392    561    497    458    466    520    270    831    272    643    180    300 
  -458   -371    302    494    448   -550    414    590    392    561    497    458    466    520    270    831    272    643    180    300 
  -458   -371    302    494    448   -550    414    590    392    561    497    458    466    520    270    831    272    643    180    300 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
    73   -256    279    533    480   -384    392    565    359    613    494    341    456    479    249    787   -278    716    202    312 
  -462   -489    361    513    350    143    394    392    362    423    337    415    428    429    251    619   -444    462    164    263 
  -639    396     94    349    308   -756    240    412    140    420    315    150    272    279     79    401   -494    386    -17    121 
  -458   -371    302    494    448   -550    414    590    392    561    497    458    466    520    270    831    272    643    180    300 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 17 nsites= 4 E= 6.2e-002 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.750000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.250000  0.000000  0.000000  0.000000 
 0.000000  0.750000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.250000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.500000  0.000000  0.000000  0.000000  0.000000  0.500000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 regular expression
--------------------------------------------------------------------------------
GAGG[AT][CT]T[GA]TTTGGAGCT
--------------------------------------------------------------------------------




Time 59.96 secs.

********************************************************************************


********************************************************************************
MOTIF  8	width =   11   sites =   5   llr = 88   E-value = 1.2e+000
********************************************************************************
--------------------------------------------------------------------------------
	Motif 8 Description
--------------------------------------------------------------------------------
Simplified        A  ::::2:a::::
pos.-specific     C  :8:::::a:a:
probability       D  :::::::::::
matrix            E  :::::::::::
                  F  :::::::::::
                  G  a:aa8:::a::
                  H  :::::::::::
                  I  :::::::::::
                  K  :::::::::::
                  L  :::::::::::
                  M  :::::::::::
                  N  :::::::::::
                  P  :::::::::::
                  Q  :::::::::::
                  R  :::::::::::
                  S  :::::::::::
                  T  :2:::a::::a
                  V  :::::::::::
                  W  :::::::::::
                  Y  :::::::::::

         bits   12.4            
                11.1            
                 9.9            
                 8.7            
Relative         7.4            
Entropy          6.2            
(25.4 bits)      5.0            
                 3.7  *     * * 
                 2.5  *   * * **
                 1.2 ***********
                 0.0 -----------

Multilevel           GCGGGTACGCT
consensus             T  A      
sequence                        
                                
                                
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value               Site  
-------------             ----- ---------            -----------
A/chicken/Vietnam/5/2010      5  8.62e-09       GGAA GCGGGTACGCT GCAGAC    
A/chicken/Vietnam/4/2010      2  8.62e-09          A GCGGGTACGCT GCAGACAAA 
A/duck/Vietnam/1/2010        11  8.62e-09 GAGCAGGGAA GCGGGTACGCT           
A/duck/Vietnam/3/2010         8  3.40e-08    CAGGGAA GCGGATACGCT GCA       
A/chicken/Egypt/11VIR445     11  1.63e-07 GAGCAGGGGA GTGGGTACGCT           
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/chicken/Vietnam/5/2010          8.6e-09  4_[8]_6
A/chicken/Vietnam/4/2010          8.6e-09  1_[8]_9
A/duck/Vietnam/1/2010             8.6e-09  10_[8]
A/duck/Vietnam/3/2010             3.4e-08  7_[8]_3
A/chicken/Egypt/11VIR445          1.6e-07  10_[8]
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 8 width=11 seqs=5
A/chicken/Vietnam/5/2010 (    5) GCGGGTACGCT  1 
A/chicken/Vietnam/4/2010 (    2) GCGGGTACGCT  1 
A/duck/Vietnam/1/2010    (   11) GCGGGTACGCT  1 
A/duck/Vietnam/3/2010    (    8) GCGGATACGCT  1 
A/chicken/Egypt/11VIR445 (   11) GTGGGTACGCT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 11 n= 2783 bayes= 9.36986 E= 1.2e+000 
  -474   -500    350    502    339    144    383    380    351    412    326    404    418    417    241    608   -456    451    154    252 
  -614    394     99    353    313   -730    244    420    147    427    321    160    282    287     84    430   -344    405    -12    127 
  -474   -500    350    502    339    144    383    380    351    412    326    404    418    417    241    608   -456    451    154    252 
  -474   -500    350    502    339    144    383    380    351    412    326    404    418    417    241    608   -456    451    154    252 
  -292   -458    365    520    356    134    397    404    368    433    351    422    440    438    257    646   -413    486    166    265 
  -486   -396    271    458    420   -574    386    560    360    530    468    430    440    490    240    803    278    613    156    272 
    78   -274    255    506    459   -402    370    541    333    590    472    318    437    455    226    768   -297    695    183    290 
  -641    396     93    347    307   -758    238    410    138    418    314    148    270    277     77    399   -496    383    -19    119 
  -474   -500    350    502    339    144    383    380    351    412    326    404    418    417    241    608   -456    451    154    252 
  -641    396     93    347    307   -758    238    410    138    418    314    148    270    277     77    399   -496    383    -19    119 
  -486   -396    271    458    420   -574    386    560    360    530    468    430    440    490    240    803    278    613    156    272 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 11 nsites= 5 E= 1.2e+000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.800000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.200000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.200000  0.000000  0.000000  0.000000  0.000000  0.800000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 regular expression
--------------------------------------------------------------------------------
G[CT]GG[GA]TACGCT
--------------------------------------------------------------------------------




Time 60.70 secs.

********************************************************************************


********************************************************************************
MOTIF  9	width =   21   sites =  11   llr = 162   E-value = 8.0e-003
********************************************************************************
--------------------------------------------------------------------------------
	Motif 9 Description
--------------------------------------------------------------------------------
Simplified        A  :91a47a:aa:9aa9a92a:a
pos.-specific     C  :::::1:::::::::::::::
probability       D  :::::::::::::::::::::
matrix            E  :::::::::::::::::::::
                  F  :::::::::::::::::::::
                  G  a19:62:a::a1::1:18:a:
                  H  :::::::::::::::::::::
                  I  :::::::::::::::::::::
                  K  :::::::::::::::::::::
                  L  :::::::::::::::::::::
                  M  :::::::::::::::::::::
                  N  :::::::::::::::::::::
                  P  :::::::::::::::::::::
                  Q  :::::::::::::::::::::
                  R  :::::::::::::::::::::
                  S  :::::::::::::::::::::
                  T  :::::::::::::::::::::
                  V  :::::::::::::::::::::
                  W  :::::::::::::::::::::
                  Y  :::::::::::::::::::::

         bits   12.4                      
                11.1                      
                 9.9                      
                 8.7                      
Relative         7.4                      
Entropy          6.2                      
(21.3 bits)      5.0                      
                 3.7                      
                 2.5                      
                 1.2 ****  ***************
                 0.0 ---------------------

Multilevel           GAGAGAAGAAGAAAAAAGAGA
consensus                A                
sequence                                  
                                          
                                          
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                    Site       
-------------             ----- ---------            ---------------------
A/Egypt/9174NAMRU3/2009       1  3.52e-08          . GAGAGAAGAAGAAAAAAGAGA           
A/chicken/WestJava/SmiSu      1  4.74e-08          . GAGAGCAGAAGAAAAAAGAGA           
A/Egypt/N07460/2012           1  9.07e-08          . GAGAAAAGAAGAAAAAAGAGA           
A/chicken/Egypt/1123AL/2      1  1.20e-07          . GAGAGGAGAAGAAAAAAGAGA           
A/duck/Egypt/1130AG/2011      1  2.11e-07          . GAGAGAAGAAGGAAAAAGAGA           
A/chicken/Egypt/10259SF/      1  2.11e-07          . GAGAGAAGAAGAAAAAGGAGA           
A/chicken/Egypt/1117AF/2      1  3.30e-07          . GAGAGAAGAAGAAAAAAAAGA           
A/Egypt/N6774/2011            1  5.02e-07          . GGGAAAAGAAGAAAAAAGAGA           
A/chicken/Egypt/1090/201      1  6.98e-07          . GAGAGGAGAAGAAAGAAGAGA           
A/chicken/Egypt/111945V/      1  8.06e-07          . GAGAAAAGAAGAAAAAAAAGA           
A/quail/Egypt/1171SG/201      1  1.34e-06          . GAAAAAAGAAGAAAAAAGAGA           
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/Egypt/9174NAMRU3/2009           3.5e-08  [9]
A/chicken/WestJava/SmiSu          4.7e-08  [9]
A/Egypt/N07460/2012               9.1e-08  [9]
A/chicken/Egypt/1123AL/2          1.2e-07  [9]
A/duck/Egypt/1130AG/2011          2.1e-07  [9]
A/chicken/Egypt/10259SF/          2.1e-07  [9]
A/chicken/Egypt/1117AF/2          3.3e-07  [9]
A/Egypt/N6774/2011                  5e-07  [9]
A/chicken/Egypt/1090/201            7e-07  [9]
A/chicken/Egypt/111945V/          8.1e-07  [9]
A/quail/Egypt/1171SG/201          1.3e-06  [9]
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 9 width=21 seqs=11
A/Egypt/9174NAMRU3/2009  (    1) GAGAGAAGAAGAAAAAAGAGA  1 
A/chicken/WestJava/SmiSu (    1) GAGAGCAGAAGAAAAAAGAGA  1 
A/Egypt/N07460/2012      (    1) GAGAAAAGAAGAAAAAAGAGA  1 
A/chicken/Egypt/1123AL/2 (    1) GAGAGGAGAAGAAAAAAGAGA  1 
A/duck/Egypt/1130AG/2011 (    1) GAGAGAAGAAGGAAAAAGAGA  1 
A/chicken/Egypt/10259SF/ (    1) GAGAGAAGAAGAAAAAGGAGA  1 
A/chicken/Egypt/1117AF/2 (    1) GAGAGAAGAAGAAAAAAAAGA  1 
A/Egypt/N6774/2011       (    1) GGGAAAAGAAGAAAAAAGAGA  1 
A/chicken/Egypt/1090/201 (    1) GAGAGGAGAAGAAAGAAGAGA  1 
A/chicken/Egypt/111945V/ (    1) GAGAAAAGAAGAAAAAAAAGA  1 
A/quail/Egypt/1171SG/201 (    1) GAAAAAAGAAGAAAAAAGAGA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 253 bayes= -2.07973 E= 8.0e-003 
  -545   -567    281    432    275    150    317    311    282    347    257    333    355    349    173    537   -526    381     92    187 
    76   -302    209    459    418   -229    327    493    288    549    436    281    401    416    185    742   -324    660    142    244 
  -341   -504    342    495    327    140    372    373    344    401    322    397    407    409    233    607   -458    447    143    240 
    96   -416    114    344    312   -532    236    379    174    435    313    182    337    313     82    628   -427    535     49    150 
   -65   -418    205    379    284     93    275    331    213    380    282    289    408    352    124    653   -382    481     51    155 
    56    -16    216    469    430   -157    336    506    298    561    449    288    409    426    195    754   -314    673    153    254 
    96   -416    114    344    312   -532    236    379    174    435    313    182    337    313     82    628   -427    535     49    150 
  -545   -567    281    432    275    150    317    311    282    347    257    333    355    349    173    537   -526    381     92    187 
    96   -416    114    344    312   -532    236    379    174    435    313    182    337    313     82    628   -427    535     49    150 
    96   -416    114    344    312   -532    236    379    174    435    313    182    337    313     82    628   -427    535     49    150 
  -545   -567    281    432    275    150    317    311    282    347    257    333    355    349    173    537   -526    381     92    187 
    76   -302    209    459    418   -229    327    493    288    549    436    281    401    416    185    742   -324    660    142    244 
    96   -416    114    344    312   -532    236    379    174    435    313    182    337    313     82    628   -427    535     49    150 
    96   -416    114    344    312   -532    236    379    174    435    313    182    337    313     82    628   -427    535     49    150 
    76   -302    209    459    418   -229    327    493    288    549    436    281    401    416    185    742   -324    660    142    244 
    96   -416    114    344    312   -532    236    379    174    435    313    182    337    313     82    628   -427    535     49    150 
    76   -302    209    459    418   -229    327    493    288    549    436    281    401    416    185    742   -324    660    142    244 
  -247   -487    327    482    321    134    361    367    330    397    316    385    407    401    221    615   -444    453    131    230 
    96   -416    114    344    312   -532    236    379    174    435    313    182    337    313     82    628   -427    535     49    150 
  -545   -567    281    432    275    150    317    311    282    347    257    333    355    349    173    537   -526    381     92    187 
    96   -416    114    344    312   -532    236    379    174    435    313    182    337    313     82    628   -427    535     49    150 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 11 E= 8.0e-003 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.909091  0.000000  0.000000  0.000000  0.000000  0.090909  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.090909  0.000000  0.000000  0.000000  0.000000  0.909091  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.363636  0.000000  0.000000  0.000000  0.000000  0.636364  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.727273  0.090909  0.000000  0.000000  0.000000  0.181818  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.909091  0.000000  0.000000  0.000000  0.000000  0.090909  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.909091  0.000000  0.000000  0.000000  0.000000  0.090909  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.909091  0.000000  0.000000  0.000000  0.000000  0.090909  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.181818  0.000000  0.000000  0.000000  0.000000  0.818182  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 regular expression
--------------------------------------------------------------------------------
GAGA[GA]AAGAAGAAAAAAGAGA
--------------------------------------------------------------------------------




Time 61.66 secs.

********************************************************************************


********************************************************************************
MOTIF 10	width =   15   sites =   3   llr = 65   E-value = 5.1e+001
********************************************************************************
--------------------------------------------------------------------------------
	Motif 10 Description
--------------------------------------------------------------------------------
Simplified        A  :::::::a:::7:a:
pos.-specific     C  ::::::::::::::a
probability       D  :::::::::::::::
matrix            E  :::::::::::::::
                  F  :::::::::::::::
                  G  aa::aa:::aa3:::
                  H  :::::::::::::::
                  I  :::::::::::::::
                  K  :::::::::::::::
                  L  :::::::::::::::
                  M  :::::::::::::::
                  N  :::::::::::::::
                  P  :::::::::::::::
                  Q  :::::::::::::::
                  R  :::::::::::::::
                  S  :::::::::::::::
                  T  ::aa::a:a:::a::
                  V  :::::::::::::::
                  W  :::::::::::::::
                  Y  :::::::::::::::

         bits   12.4                
                11.1                
                 9.9                
                 8.7                
Relative         7.4                
Entropy          6.2                
(31.2 bits)      5.0                
                 3.7               *
                 2.5   **  * *   * *
                 1.2 *********** ***
                 0.0 ---------------

Multilevel           GGTTGGTATGGATAC
consensus                       G   
sequence                            
                                    
                                    
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                 Site    
-------------             ----- ---------            ---------------
A/chicken/Anhui/T5/2006       1  6.50e-10          . GGTTGGTATGGATAC CATCAT    
A/chicken/Guiyang/821/20      7  6.50e-10     GTAGAT GGTTGGTATGGATAC           
A/chicken/Bangladesh/11V      7  1.21e-09     GTAGAT GGTTGGTATGGGTAC           
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/chicken/Anhui/T5/2006           6.5e-10  [10]_6
A/chicken/Guiyang/821/20          6.5e-10  6_[10]
A/chicken/Bangladesh/11V          1.2e-09  6_[10]
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 10 width=15 seqs=3
A/chicken/Anhui/T5/2006  (    1) GGTTGGTATGGATAC  1 
A/chicken/Guiyang/821/20 (    7) GGTTGGTATGGATAC  1 
A/chicken/Bangladesh/11V (    7) GGTTGGTATGGGTAC  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 15 n= 1771 bayes= 8.86125 E= 5.1e+001 
  -450   -477    373    526    362    141    405    405    375    437    349    427    440    442    263    632   -430    476    174    275 
  -450   -477    373    526    362    141    405    405    375    437    349    427    440    442    263    632   -430    476    174    275 
  -429   -346    336    539    479   -521    446    622    430    598    526    486    497    553    303    861    262    674    206    334 
  -429   -346    336    539    479   -521    446    622    430    598    526    486    497    553    303    861    262    674    206    334 
  -450   -477    373    526    362    141    405    405    375    437    349    427    440    442    263    632   -430    476    174    275 
  -450   -477    373    526    362    141    405    405    375    437    349    427    440    442    263    632   -430    476    174    275 
  -429   -346    336    539    479   -521    446    622    430    598    526    486    497    553    303    861    262    674    206    334 
    67   -239    308    567    502   -366    417    591    390    637    517    367    485    508    275    804   -258    737    221    337 
  -429   -346    336    539    479   -521    446    622    430    598    526    486    497    553    303    861    262    674    206    334 
  -450   -477    373    526    362    141    405    405    375    437    349    427    440    442    263    632   -430    476    174    275 
  -450   -477    373    526    362    141    405    405    375    437    349    427    440    442    263    632   -430    476    174    275 
    31   -240    343    583    496    -86    438    574    411    626    512    409    518    531    291    812   -243    725    221    340 
  -429   -346    336    539    479   -521    446    622    430    598    526    486    497    553    303    861    262    674    206    334 
    67   -239    308    567    502   -366    417    591    390    637    517    367    485    508    275    804   -258    737    221    337 
  -636    396     96    351    311   -752    242    415    143    423    318    152    274    281     81    405   -492    391    -15    125 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 15 nsites= 3 E= 5.1e+001 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.666667  0.000000  0.000000  0.000000  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 regular expression
--------------------------------------------------------------------------------
GGTTGGTATGG[AG]TAC
--------------------------------------------------------------------------------




Time 62.43 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
A/chicken/Bangladesh/830         1.22e-03  [2(6.62e-06)]
A/chicken/Egypt/39825/20         4.13e-03  6_[4(4.39e-07)]
A/ck/Indonesia/072/10            3.16e-02  [2(2.31e-05)]
A/duck/Bangladesh/5749/1         2.68e-07  2_[5(4.54e-08)]_5
A/mallard/Crimea/245/200         3.86e-09  [1(6.48e-11)]
A/environment/Bangladesh         1.25e-03  [4(4.39e-07)]_6
A/chicken/Egypt/111945V/         1.66e-03  [9(8.06e-07)]
A/avian/New_York/Sg00372         7.47e-04  [3(3.23e-09)]_6
A/chicken/Egypt/1117AF/2         1.30e-03  [9(3.30e-07)]
A/wild_bird_feces/Cheons         1.32e-02  4_[5(5.98e-07)]_3
A/chicken/India/241272/2         8.88e-03  [2(5.95e-06)]
A/duck/Jiangxi/80/2005           2.00e-03  [2(2.08e-07)]
A/chicken/Inhu/BPPVRII/2         5.07e-03  [2(1.32e-06)]
A/duck/Guangxi/668/2004          3.93e-03  [2(1.67e-06)]
A/whooper_swan/Hokkaido/         5.48e-13  1_[7(1.62e-11)]_3
A/duck/Vietnam/1/2010            8.68e-04  10_[8(8.62e-09)]
A/avian/New_York/Sg00387         1.90e-04  3_[3(3.23e-09)]_3
A/chicken/Cambodia/LC/20         3.04e-01  21
A/mallard/Maryland/786/2         2.27e-09  4_[5(5.66e-09)]_3
A/chicken/Egypt/128s/201         4.88e-08  1_[3(4.76e-09)]_5
A/guinea_fowl/Yangon/834         2.87e-02  21
A/chicken/WestJava/SmiAc         1.07e-02  [2(1.27e-05)]
A/Indonesia/625/2006             1.65e-02  3_[4(1.47e-06)]_3
A/Egypt/N07460/2012              5.29e-04  [9(9.07e-08)]
A/duck/Victoria/26/1981|         1.14e-09  [1(1.29e-11)]
A/duck/Viet_Nam/TG2401/2         9.09e-03  [2(6.33e-05)]
A/chicken/Egypt/398252/2         1.21e-08  1_[5(5.66e-09)]_6
A/environment/Maryland/1         2.37e-08  [1(3.01e-11)]
A/duck/New_Zealand/41/19         3.43e-08  [1(6.33e-10)]
A/heron/Cambodia/TM068/2         3.39e-03  [4(3.75e-07)]_6
A/chicken/Egypt/10117/20         6.56e-08  [6(6.47e-12)]
A/VietNam/HN31413/2008           3.48e-04  [4(1.21e-07)]_6
A/chicken/Egypt/398214/2         4.80e-07  [6(2.63e-11)]
A/chicken/Egypt/39823/20         6.21e-02  21
A/chicken/Belgium/150VB/         1.66e-08  [1(7.84e-10)]
A/goose/Fujian/bb/2003           3.18e-03  [2(3.89e-07)]
A/Vietnam/UT30259/2004           2.87e-03  [2(9.60e-06)]
A/duck/Yunnan/47/2006            1.19e-02  [2(3.27e-06)]
A/chicken/Egypt/10259SF/         1.55e-03  [9(2.11e-07)]
A/bird/Turkey/Unye_ist06         4.33e-03  [2(1.45e-06)]
A/chicken/Bangladesh/11r         4.43e-08  4_[7(6.12e-10)]
A/chicken/Vietnam/NCVD19         2.96e-04  [2(7.67e-08)]
A/swan/England/AV3142149         8.58e-06  [1(5.93e-09)]
A/chicken/Ibaraki/17/200         3.23e-08  [1(5.83e-11)]
A/chicken/Nepal/354/2010         7.04e-03  3_[4(7.69e-07)]_3
A/duck/Vietnam/NCVD366/2         1.04e-02  [2(3.27e-06)]
A/duck/Korea/GJ54/2004|G         8.70e-02  4_[5(2.69e-06)]_3
A/muscovy_duck/Vietnam/L         5.49e-03  [2(1.20e-06)]
A/duck/Egypt/1130AG/2011         1.67e-03  [9(2.11e-07)]
A/ck/Indonesia/091/10            6.76e-08  4_[7(4.14e-11)]
A/duck/Vietnam/9/2010            8.80e-01  21
A/duck/Hokkaido/Vac3/200         6.46e-09  [1(1.27e-10)]
A/Thailand/WRAIR1720H/20         7.09e-03  [2(7.12e-07)]
A/chicken/Cambodia/022LC         5.25e-01  21
A/spurwinged_goose/Niger         1.87e-07  [1(2.89e-10)]
A/pigeon/Egypt/SHAH5803/         7.97e-04  [4(4.39e-07)]_6
A/whooper_swan/Mongolia/         1.74e-06  [1(5.15e-08)]
A/chicken/Shan/2626/2007         7.31e-04  [2(1.84e-08)]
A/chicken/Italy/367/97|A         5.38e-01  21
A/turkey/Italy/1325/2005         6.19e-01  21
A/chicken/Egypt/1158SF/2         1.23e-02  [2(2.10e-06)]
A/chicken/Egypt/398220/2         2.97e-05  7_[5(5.66e-09)]
A/condor/Guangdong/139/2         9.86e-03  [2(1.20e-06)]
A/chicken/Shandong/A1/20         1.24e-03  [2(3.10e-07)]
A/chicken/Egypt/11764s/2         2.76e-01  21
A/swine/NorthSumatra/UT6         3.58e-03  [2(4.76e-07)]
A/o.bill_stork/Thailand/         2.66e-03  [2(2.53e-07)]
A/chicken/Texas/2983132/         1.39e-06  [1(5.19e-10)]
A/chicken/Bangladesh/11V         1.24e-05  6_[10(1.21e-09)]
A/chicken/Ibaraki/15/200         2.90e-08  [1(1.65e-10)]
A/chicken/Shandong/A10/2         5.58e-03  [2(1.92e-06)]
A/duck/Vietnam/OIE1287/2         4.98e-04  [2(3.14e-08)]
A/duck/Vietnam/NCVD1161/         1.05e-02  3_[4(4.39e-07)]_3
A/duck/Ireland/113/1983|         7.45e-01  21
A/chicken/EastKalimantan         5.24e-03  [2(4.76e-07)]
A/duck/Vietnam/3/2010            2.10e-03  7_[8(3.40e-08)]_3
A/Muscovy_duck/Ca_Mau/11         1.21e-02  [2(7.95e-07)]
A/chicken/Turkey/Misinli         9.81e-14  1_[7(3.22e-11)]_3
A/chicken/Italy/9097/199         6.24e-07  1_[5(3.92e-08)]_6
A/mallard/Washington/456         7.87e-06  7_[5(4.78e-09)]
A/duck/Iran/11VIR53161/2         6.67e-01  21
A/Muscovy_Duck/Vietnam/1         1.77e-04  [4(2.36e-07)]_6
A/duck/Hunan/149/2005            3.48e-06  [1(8.40e-09)]
A/Egypt/4822NAMRU3/2009          2.66e-02  [2(4.03e-05)]
A/duck/Vietnam/NCVD1463/         3.24e-03  [2(1.92e-06)]
A/poultry/Egypt/398256/2         1.80e-03  [4(6.25e-07)]_6
A/turkey/Italy/1980|GQ24         2.83e-08  [6(7.65e-12)]
A/goose/Bangladesh/11VIR         2.97e-01  21
A/mallard/Washington/454         3.11e-09  [1(9.89e-12)]
A/chicken/Cambodia/013LC         3.57e-11  6_[3(1.22e-09)]
A/chicken/Banten/PdglKas         5.91e-03  [2(2.53e-07)]
A/chicken/Vietnam/NCVD03         3.60e-01  21
A/wigeon/Ohio/379/1988|C         1.02e-09  [1(2.82e-12)]
A/chicken/Magelang/BBVW6         1.62e-03  [2(7.67e-08)]
A/chicken/Lampung/BPPVRI         1.43e-02  [2(2.91e-06)]
A/chick/Pennsylvania/1/1         6.69e-05  [1(2.05e-08)]
A/chicken/Liaoning/A1/20         3.40e-03  [2(2.10e-06)]
A/wild_bird_feces/Cheons         1.67e-13  6_[3(4.15e-11)]
A/chicken/Sikkim/151466/         9.38e-03  [2(6.62e-06)]
A/environment/ChangSha/2         1.87e-03  [2(5.95e-06)]
A/chicken/CentralJava/UT         2.46e-03  [2(2.60e-06)]
A/Vietnam/HN36250/2010           1.88e-02  [2(1.51e-05)]
A/chicken/Guiyang/821/20         1.39e-06  6_[10(6.50e-10)]
A/owstons_civet/VietNam/         9.57e-04  [2(8.77e-07)]
A/chicken/Bangladesh/11r         3.28e-06  3_[3(8.33e-11)]_3
A/environment/New_York/1         3.29e-10  [1(7.24e-13)]
A/domestic_goose/Hong_Ko         1.50e-02  [2(8.76e-06)]
A/Hubei/1/2010                   3.24e-03  [2(1.92e-06)]
A/Hunan/1/2009                   1.76e-03  [2(3.93e-06)]
A/chicken/Egypt/1123AL/2         8.11e-04  [9(1.20e-07)]
A/wood_duck/MD/04623/200         8.07e-10  [1(9.89e-12)]
A/chicken/Shanxi/2/2006          2.04e-02  21
A/quail/Egypt/1171SG/201         1.40e-03  [9(1.34e-06)]
A/duck/France/080036/200         7.54e-09  [1(8.17e-11)]
A/chicken/Yangon/182/201         2.37e-03  [2(3.10e-07)]
A/chicken/Scotland/59|X0         5.00e-06  [1(5.46e-09)]
A/chicken/Sharkia/CAI41/         1.52e-03  [2(1.04e-07)]
A/mallard/Sweden/21/2002         2.50e-09  [1(2.67e-11)]
A/environment/Bangladesh         7.64e-03  [2(5.95e-06)]
A/chicken/Hebei/A8/2009          2.47e-03  [2(2.60e-06)]
A/chicken/Egypt/11VIR445         1.66e-03  10_[8(1.63e-07)]
A/duck/Guangxi/13/2004           3.67e-03  [2(9.60e-06)]
A/duck/France/090043/200         4.42e-08  [1(2.89e-10)]
A/chicken/Denpasar/BBVD1         2.21e-02  [2(3.61e-06)]
A/Egypt/N6774/2011               6.32e-04  [9(5.02e-07)]
A/parrot/CA/6032/04|DQ25         7.46e-08  [1(1.65e-10)]
A/Cambodia/VN05103/2005          1.41e-01  21
A_GenBank/heron/Cambodia         2.73e-03  6_[4(3.75e-07)]
A/chicken/Bangladesh/11r         6.14e-05  7_[5(1.10e-08)]
A/chicken/Tabanan/BBVD14         1.77e-03  [2(2.08e-07)]
A/great_cormorant/Tibet/         5.06e-05  [2(3.08e-09)]
A/Egypt/321NAMRU3/2007           5.79e-03  [2(6.23e-07)]
A/chicken/Egypt/10512AG/         3.04e-02  [2(9.60e-06)]
AHAH5_[11734;11734]              4.21e-37  [1(3.05e-19)]
A/Egypt/9174NAMRU3/2009          5.33e-04  [9(3.52e-08)]
A/Indonesia/NIHRD12379/2         4.50e-03  [2(6.23e-07)]
A/chicken/Korea/ES/03            1.77e-02  [2(5.89e-05)]
A/avian/New_York/Sg00377         1.75e-05  7_[5(5.66e-09)]
A/chicken/Vietnam/NCVD09         2.29e-03  [2(4.40e-06)]
A/Chicken/TurkeyMus/09rs         5.71e-08  4_[7(3.22e-11)]
A/duck/Hong_Kong/312/197         6.18e-05  [3(8.33e-11)]_6
A/Vietnam/UT3030/2003            6.22e-04  [2(5.58e-08)]
A/crow/Bangladesh/11rs19         6.76e-02  21
A/duck/Primorie/2633/200         3.16e-05  [3(4.15e-11)]_6
A/Indonesia/UT3006/2005          7.23e-03  [2(3.89e-07)]
A/duck/Qalubia/CAI11/201         5.33e-03  [2(3.89e-07)]
A/green_winged_teal/Dela         2.40e-09  [1(5.44e-12)]
A/chicken/Anhui/T5/2006          2.35e-05  [10(6.50e-10)]_6
A/chicken/Puebla/8623607         9.01e-01  21
A/duck/Guangxi/951/2005          4.60e-03  [2(5.43e-06)]
A/chicken/Egypt/1219s/20         4.44e-11  4_[3(4.76e-09)]_2
A/chicken/WestJava/SmiSu         1.15e-03  [9(4.74e-08)]
A/chicken/Cambodia/TLC2/         1.63e-05  3_[3(1.22e-09)]_3
A/duck/France/05056a/200         1.22e-08  [1(4.65e-10)]
A/Shandong/1/2009                2.38e-03  [2(2.34e-06)]
A/chicken/Vietnam/NCVD40         5.75e-03  [2(3.27e-06)]
A/chicken/Queretaro/7653         1.33e-02  3_[4(3.75e-07)]_3
A/environment/Bangladesh         2.15e-03  [4(3.75e-07)]_6
A/barn_swallow/Hong_Kong         1.05e-02  [2(2.31e-05)]
A/duck/Primorie/2621/200         9.31e-08  1_[3(1.97e-08)]_5
A/chicken/BacLieuVietnam         2.11e-03  3_[4(6.25e-07)]_3
A_DISC/Cambodia/V0401301         8.39e-03  [2(2.91e-06)]
A/bar_headed_goose/Mongo         9.64e-06  [1(2.05e-08)]
A/chicken/Egypt/113Q/201         1.22e-02  [2(1.92e-06)]
A/quail/Thanatpin/2283/2         4.14e-03  [2(6.62e-06)]
A/chicken/Egypt/125s/201         1.53e-11  4_[5(5.66e-09)]_3
A/duck/Hong_Kong/698/197         5.60e-09  [1(2.08e-11)]
A/chicken/Egypt/209573/2         8.03e-01  21
A/chicken/Indonesia/SmiW         3.08e-08  [6(5.44e-12)]
A/turkey/Egypt/091QNLQP/         7.34e-05  [3(8.33e-11)]_6
A/duck/Egypt/1053/2010           2.54e-02  21
A/Egypt/2786NAMRU3/2006          8.02e-04  6_[4(6.25e-07)]
A/mallard/Netherlands/3/         1.90e-06  3_[3(4.15e-11)]_3
A/chicken/Bangladesh/11r         3.27e-05  [3(8.33e-11)]_6
A/chicken/Liaoning/23/20         4.61e-03  [2(1.20e-06)]
A/unknown/NY/98996/01|AY         2.75e-09  [1(1.88e-11)]
A/tern/South_Africa/1961         5.03e-01  21
A/chicken/Nepal/T1P/12           2.79e-03  [2(7.12e-07)]
A/marabou_stork/Cambodia         2.36e-01  21
A/chicken/Cambodia/67F1/         1.19e-02  [2(2.10e-06)]
A/gadwall/California/442         6.07e-10  [1(2.10e-12)]
A/chicken/TanseMyanmar/S         5.35e-03  3_[4(6.25e-07)]_3
A/duck/Cao_Bang/43/2007          5.78e-04  [2(5.46e-07)]
A/chicken/Miyazaki/T10/2         2.84e-03  [2(1.67e-06)]
A/whitefaced_whistling_d         7.41e-02  21
A/muscovy_duck/Vietnam/N         5.05e-03  [2(6.23e-07)]
A/Canada_goose/Alaska//4         2.31e-09  4_[5(4.78e-09)]_3
A/chicken/Bangladesh/967         2.96e-03  [2(7.12e-07)]
A/chicken/Egypt/11VIR445         6.80e-03  [2(1.92e-06)]
A/Hong_Kong/7032/2012            1.26e-02  3_[4(4.39e-07)]_3
A/chicken/Vietnam/945/20         5.75e-01  21
A/ostrich/South_Africa/A         1.76e-05  3_[3(7.90e-10)]_3
A/wild_bird/Wisconsin/43         1.40e-06  1_[5(5.66e-09)]_6
A/spurwinged_goose/Niger         2.31e-02  [2(1.16e-05)]
A/duck/Vietnam/NCVD1026/         4.60e-03  [2(1.27e-05)]
A/tern/South_Africa/1959         1.00e-06  3_[3(4.15e-11)]_3
A/muscovy_duck/Jakarta/S         2.32e-03  [2(5.58e-08)]
A/goose/Germany/R3160/09         2.01e-09  [1(4.14e-11)]
A/turkey/Ontario/7732/19         7.44e-01  21
A/chicken/Egypt/1090/201         1.64e-03  [9(6.98e-07)]
A/mallard/Netherlands/2/         5.96e-09  [1(5.83e-11)]
A/chicken/Vietnam/NCVD18         3.46e-03  [2(1.27e-05)]
A/chicken/Texas/1672804/         1.67e-07  [1(3.63e-11)]
A/duck/Italy/775/2004|CY         1.24e-09  [1(9.22e-11)]
A/chicken/Bangladesh/FD(         2.17e-05  [3(4.15e-11)]_6
A/chicken/Vietnam/NCVD40         1.17e-02  [2(1.66e-05)]
A/swan/Hokkaido/67/1996|         1.62e-07  [1(2.49e-10)]
A/chicken/Bangladesh/152         9.67e-04  [2(1.20e-06)]
A/chicken/Bangladesh/11r         1.76e-01  21
A/chicken/Indonesia/Suka         2.79e-01  21
A/gull/Pennsylvania/4175         3.23e-07  [1(1.05e-09)]
A/turkey/England/N28/73|         2.35e-08  1_[3(2.10e-08)]_5
A/chicken/Badung/BBVD302         1.81e-03  [2(2.17e-07)]
A/chicken/Bangladesh/11r         2.34e-03  [3(7.12e-09)]_6
A/chicken/Yichang/lung1/         8.73e-01  21
A/avian/Missouri/4655937         9.68e-09  [1(1.88e-11)]
A/turkey/TX/14082/1982_H         4.49e-09  [1(1.88e-11)]
A/Cambodia/W0526301/2012         1.11e-02  [2(1.92e-06)]
A/chicken/Vietnam/NCVD11         1.10e-02  3_[4(3.75e-07)]_3
A/duck/Egypt/SHZA6605/20         6.64e-02  21
A/chicken/Shandong/A5/20         8.69e-03  [2(7.33e-06)]
A/chicken/VA/40018/1984_         1.38e-04  [1(8.00e-08)]
A/common_magpie/HongKong         3.92e-09  4_[7(1.62e-11)]
A/shearwater/Australia/7         5.83e-09  [1(6.48e-11)]
A/Chicken/TurkeyEdirne/0         2.06e-08  1_[5(1.90e-09)]_6
A/goose/Guiyang/337/2006         7.92e-03  [2(7.95e-07)]
A/chicken/Egypt/11VIR445         4.91e-01  21
A/environment/Thailand/I         3.12e-03  [2(4.76e-07)]
A/wild_bird_feces/Byeong         9.09e-06  3_[3(6.63e-10)]_3
A/duck/Vietnam/NCVD422/2         1.28e-02  [2(1.96e-05)]
A/chicken/Bhutan/4/10            9.80e-01  21
A/turkey/MN/40550/1987_H         5.51e-03  4_[5(9.56e-07)]_3
A/chicken/Egypt/1085/201         7.60e-03  [2(2.60e-06)]
A/duck/France/06436/2006         4.96e-08  [1(8.65e-10)]
A/HongKong/6841/2010             4.72e-01  21
A/chicken/WestBengal/239         6.43e-03  [2(1.45e-06)]
A/duck/Bac_Lieu/1213/200         1.71e-03  [2(9.16e-08)]
A/cinnamon_teal/Californ         2.44e-09  [1(1.49e-11)]
A/Muscovy_duck/France/07         1.85e-08  [1(1.05e-09)]
A/chicken/Vietnam/4/2010         6.85e-04  1_[8(8.62e-09)]_9
A/chicken/Vietnam/NCVD01         1.05e-02  [2(2.94e-05)]
A/chicken/Puebla/1458665         1.71e-08  4_[5(1.20e-08)]_3
A/Northern_shoveler/Utah         3.16e-10  [1(1.11e-12)]
A/tundra_swan/Alaska//48         1.72e-09  [1(1.29e-11)]
A/chicken/Sheny/0606/200         2.19e-03  [2(1.67e-06)]
A/turkey/England/N28/73|         7.65e-01  21
A/duck/Iran/VIR53161/201         9.31e-01  21
A/chicken/Yangon/1023/20         3.00e-02  [2(2.51e-05)]
A/chicken/Vietnam/5/2010         5.43e-04  4_[8(8.62e-09)]_6
A/chicken/Hebei/326/2005         4.20e-03  [2(1.32e-06)]
A/chicken/Bangladesh/150         3.10e-04  [2(3.10e-07)]
A/wild_bird/Minnesota/46         2.06e-09  [1(4.20e-12)]
A/chicken/India/81766/20         2.22e-03  [2(7.12e-07)]
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