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LOCUS DDU63596 310 bp DNA INV 14-MAY-1999
DEFINITION Dictyostelium discoideum Tdd-4 transposable element flanking
sequence, clone p427/428 right end.
ACCESSION U63596
NID g2393749
KEYWORDS .
SOURCE Dictyostelium discoideum.
ORGANISM Dictyostelium discoideum
Eukaryota; Dictyosteliida; Dictyostelium.
REFERENCE 1 (bases 1 to 310)
AUTHORS Wells,D.J.
TITLE Tdd-4, a DNA transposon of Dictyostelium that encodes proteins
similar to LTR retroelement integrases
JOURNAL Nucleic Acids Res. 27 (11), 2408-2415 (1999)
REFERENCE 2 (bases 1 to 310)
AUTHORS Wells,D.J. and Welker,D.L.
TITLE Dictyostelium discoideum Tdd-4 transposable element, right end
flanking sequence from clone p427/428
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 310)
AUTHORS Wells,D.J. and Welker,D.L.
TITLE Direct Submission
JOURNAL Submitted (11-JUL-1996) Biology, Utah State Univ., Logan, UT
84322-5305, USA
FEATURES Location/Qualifiers
source 1..310
/organism="Dictyostelium discoideum"
/strain="AX4"
/db_xref="taxon:44689"
/clone="p427/428"
misc_feature 5.12
/note="Fuzzy location"
misc_feature join(J00194:(100..202),1..245,256..258)
/note="Location partly in another entry"
BASE COUNT 118 a 46 c 67 g 79 t
//
LOCUS DDU63595 83 bp DNA INV 14-MAY-1999
DEFINITION Dictyostelium discoideum Tdd-4 transposable element flanking
sequence, clone p427/428 left end.
ACCESSION U63595
NID g2393748
KEYWORDS .
SOURCE Dictyostelium discoideum.
ORGANISM Dictyostelium discoideum
Eukaryota; Dictyosteliida; Dictyostelium.
REFERENCE 1 (bases 1 to 83)
AUTHORS Wells,D.J.
TITLE Tdd-4, a DNA transposon of Dictyostelium that encodes proteins
similar to LTR retroelement integrases
JOURNAL Nucleic Acids Res. 27 (11), 2408-2415 (1999)
REFERENCE 2 (bases 1 to 83)
AUTHORS Wells,D.J. and Welker,D.L.
TITLE Dictyostelium discoideum Tdd-4 transposable element, left end
flanking sequence from clone p427/428
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 83)
AUTHORS Wells,D.J. and Welker,D.L.
TITLE Direct Submission
JOURNAL Submitted (11-JUL-1996) Biology, Utah State Univ., Logan, UT
84322-5305, USA
FEATURES Location/Qualifiers
source 1..83
/organism="Dictyostelium discoideum"
/strain="AX4"
/db_xref="taxon:44689"
/clone="p427/428"
BASE COUNT 31 a 16 c 12 g 24 t
//
LOCUS HUMBDNF 918 bp DNA PRI 31-OCT-1994
DEFINITION Human brain-derived neurotrophic factor (BDNF) gene, complete cds.
ACCESSION M37762
VERSION M37762.1 GI:179402
KEYWORDS neurotrophic factor.
SOURCE Human DNA.
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Mammalia;
Eutheria; Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 918)
AUTHORS Jones,K.R. and Reichardt,L.F.
TITLE Molecular cloning of a human gene that is a member of the nerve
growth factor family
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87 (20), 8060-8064 (1990)
MEDLINE 91045937
COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad.
Sci. U.S.A. (1990) In press] kindly submitted
by K.R.Jones, 13-AUG-1990.
FEATURES Location/Qualifiers
source 1..918
/organism="Homo sapiens"
/db_xref="taxon:9606"
/dev_stage="adult"
sig_peptide 76..123
/gene="NTF3"
/note="G00-125-917; putative"
/product="brain-derived neurotrophic factor"
CDS 76..819
/gene="BDNF"
/note="putative"
/codon_start=1
/db_xref="GDB:G00-125-916"
/product="brain-derived neurotrophic factor"
/protein_id="AAA51820.1"
/db_xref="GI:179403"
/translation="MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLE
SVNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPL
EPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMS
GGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRAL
TMDSKKRIGWRFIRIDTSCVCTLTIKRGR"
gene 76..816
/gene="NTF3"
/map="12p13"
gene 76..819
/gene="BDNF"
/map="11p13"
mat_peptide 124..816
/gene="NTF3"
/note="G00-125-917; putative"
/product="brain-derived neurotrophic factor"
BASE COUNT 269 a 192 c 237 g 220 t
//
LOCUS NT_010368 161485 bp DNA CON 16-NOV-2000
DEFINITION Homo sapiens chromosome 15 working draft sequence segment, complete
sequence.
ACCESSION NT_010368
VERSION NT_010368.1 GI:11433101
KEYWORDS HTG.
SOURCE human.
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 161485)
AUTHORS International Human Genome Project collaborators.
TITLE Toward the complete sequence of the human genome
JOURNAL Unpublished
COMMENT GENOME ANNOTATION REFSEQ: NCBI contigs are derived from assembled
genomic sequence data. They may include both draft and finished
sequence.
COMPLETENESS: not full length.
FEATURES Location/Qualifiers
source 1..310
/organism="Homo sapiens"
/db_xref="taxon:9606"
/chromosome="15"
source order(1..100,251..300,300..310)
/note="Doctored from Accession AC011224
sequenced by Whitehead Institute
for Biomedical Research"
/organism="Homo sapiens"
/db_xref="taxon:9606"
/clone="RP11-10K20"
variation 244
/replace="T"
/replace="A"
/db_xref="dbSNP:140670"
CONTIG AC011224.27:1..116977
//
LOCUS HUMBETGLOA 3002 bp DNA linear PRI 26-AUG-1994
DEFINITION Human haplotype C4 beta-globin gene, complete cds.
ACCESSION L26462
VERSION L26462.1 GI:432453
KEYWORDS beta-globin.
SOURCE Homo sapiens DNA.
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3002)
AUTHORS Fullerton,S.M., Harding,R.M., Boyce,A.J. and Clegg,J.B.
TITLE Molecular and population genetic analysis of allelic sequence
diversity at the human beta-globin locus
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (5), 1805-1809 (1994)
MEDLINE 94173918
PUBMED 7907422
FEATURES Location/Qualifiers
source 1..3002
/organism="Homo sapiens"
/db_xref="taxon:9606"
/haplotype="C4"
/note="sequence found in a Melanesian population"
variation 111
/replace="t"
variation 263
/note="Rsa I polymorphism"
/replace="t"
variation 273
/replace="c"
variation 286..287
/note="2 bp insertion of AT"
/replace=""
variation 288
/replace="t"
variation 295..296
/note="1 bp deletion of C or 2 bp deletion of CT"
/replace=""
variation 347
/replace="c"
variation 476
/replace="t"
variation 500
/replace="c"
CDS join(866..957,1088..1310,2161..2289)
/codon_start=1
/product="beta-globin"
/protein_id="AAA21100.1"
/db_xref="GI:532506"
/translation="MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFE
SFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPE
NFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH"
exon <866..957
/number=1
variation 874
/replace="c"
intron 958..1087
/number=1
exon 1088..1310
/number=2
intron 1311..2160
/number=2
variation 1326
/note="Ava II polymorphism"
/replace="g"
variation 1384
/replace="g"
variation 1391
/replace="t"
variation 1976
/replace="t"
exon 2161..>2289
/number=3
variation 2522
/replace="c"
variation 2602
/replace="a"
variation 2604
/replace="c"
variation 2760
/note="Hinf I polymorphism"
/replace="t"
variation 2913
/replace="g"
BASE COUNT 810 a 601 c 599 g 992 t
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