1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
|
CPU time (band calc): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00
sequence: gi|2239287|gb|U51115.1|BSU51115
hit 0 : 15589 15691 78.40 bits
hit 1 : 15589 15691 78.40 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A+ A+A+ AAAA A :CUC:UAUAAU: :GGGAAUAUGGCCC: :AGUUUCUACC:G
15589 CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCG 15648
<<<<_______>>>>>>>,,)))).))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcG.aGuaAauauuaaauauuu 102
GCAACCGUAAAUUGCC:GACUA:G AG: AA + ++ +++++
15649 GCAACCGUAAAUUGCCGGACUAUGcAGGGAAGUGAUCGAUAAA 15691
hit 2 : 13198 13294 5.41 bits
hit 3 : 13198 13294 5.41 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+A+ +U + AAAA AA : :U:::A AA:C::::G A UGGC::::G: UUU U ::
13198 UAUCUUCUUAAAAUAAGGAAUGAAAAAACCAGCUGCAC-UGGCAGCUGGUUUUUUUUGU- 13255
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
: C AA :U+++:: U:::A: : AUAU+ U +U
13256 ---UGCAAAAGAUAAAACCAUUUCAUACGAUAUACCGUCAUG 13294
hit 4 : 11655 11756 81.29 bits
hit 5 : 11655 11756 81.29 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A AAAU AAA+AA A+ : CGUAUAAU::CG:GAAUAUGGC:CG::AGU UCUACCA:
11655 AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAA 11714
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
GC ACCGUAAAU GC:UGACUACG : AU+U +++ UUU
11715 GCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUU 11756
hit 0 : 825 748 2.84 bits
hit 1 : 825 748 2.84 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+AAAA+ AA AAAA A: ::C:U:U A UG C+ A A UCUAC
15073 UAAAAACAACAAAAGGAGCUGCUUUUUA-----------UGCUCACACACGAUCUAC--- 15118
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
G AAA +AC:A:G:: :A ++UU AU+U+U
15119 ----AUGAAAA------AACAAAGCAUUACAUUUCCAUUUAU 15150
hit 2 : 4125 4023 1.38 bits
hit 3 : 4125 4023 1.38 bits
:::::::::::::::::((((((((,,,<<<<<<<_______.>>>.>>>>,,,,,,,,<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGG.ccc.gagaGUuUCUACC 58
AAA +AAA A A AA: :U:::AUAA :+:G:: AU U ::C :+: UUUC AC
11773 CAAACAAAACACUACAAAUUUGAAAUAAGCUGGUAUAUUUUCuUACaCGAAUUUUCGAC- 11831
<<<<<<_______>>>...>>>>,,))))))))::::::::::::::
59 aGgcaaCCGUAAAuug...cCuGACUAcGaGuaAauauuaaauauuu 102
:AAC GUA AUU: + +GA U:::A: :A+ AU+A+AU+ +
11832 ---AAACUGUAUAUUUaugAUAGAGUUUCAAUUAUCAUAAUAUUCAG 11875
hit 4 : 8105 8018 1.70 bits
hit 5 : 8105 8018 1.70 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A+A A +A AA U:::AU A UAUGGC ++A+ GU UC A
7793 GAUACGGAUUACGGCAAAAGUGGCAUCA---------UAUGGCGUAAAGGUAUCAAG--- 7840
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
A CGUAA U+C ACU:::A AA+A +AAA+ +++
7841 --AAUCGUAAUAUACGCUACUGUCAUCAAAAAGAAAAACAAA 7880
hit 6 : 11759 11658 9.64 bits
hit 7 : 11759 11658 9.64 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A AA+ AAA AAA+ : CGUA +::::: : UA GG: :::::GU AC: G
4139 AUCAAACGAAAGAAAUGUUUACGUA-GUCAAGCCAUUUACGGUAGCUUGGUAGAGACUUG 4197
<<<<_______>>>>>>>,,.))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGAC.UAcGaGuaAauauuaaauauuu 102
:: :CC UA : ::C : UACG : AU UUA++U +UU
4198 CGAGCCAUAUUCCCGCGAUUaUACGAAUUCAUCUUAUUUGAUU 4240
hit 8 : 13350 13253 0.79 bits
hit 9 : 13350 13253 0.79 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+AA UA AA A + :A +C:U: C::: AA :::G G C C:A
2548 UAAGGUACCGAACAGUCAAGUCAUU---UCCAUUUAAGUAAAGCAUGGCGGCACAUCUAC 2604
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
: :AC GUA AU: : U:A :A:G+ U: AU UU++ A+ +
2605 AUGACGGUAUAUCGUAUGA-AAUGGUUUUAUCUUUUGCAACA 2645
hit 10 : 13846 13740 6.35 bits
hit 11 : 13846 13740 6.35 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,.....
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCU..... 55
A A+A+A A AA AA:A :::A A :C ::::A A G :::: G: UUCU
2052 CAGCAAAUACACAAGAACAACUAAAAACCCGUCAUAGAAAGCAUGAUGGCGUUCUccgaa 2111
,,<<<<<<<_______>>>>>>>,,))))))))::::::::::::::
56 ACCaGgcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
ACC::GC :CCG : GC::G CU::: U:AA+ +A++ ++
2112 ACCGAGCGGCCGAUUCCAGCUUGCCUUUAACUGAAACCAAUUCCCAA 2158
hit 12 : 14215 14125 0.90 bits
hit 13 : 14215 14125 0.90 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
AA AA AA A :+ :UAUA+U: :+++ A A GG : :AGU
1683 AAGCGGAAUCAACGACGCCGUAAUAUAUUCAGAAAUAAACGG---CCAAGUCA------- 1732
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
C::CCGUAAA::GC+ CUA: +: ++ U+ AA+++ +
1733 -CUGCCGUAAACAGCAGCGCUAUCGCAACUACUGCAAAUACA 1773
hit 14 : 15695 15594 7.88 bits
hit 15 : 15695 15594 7.88 bits
:::::::::::::::::((((((((,,.,<<<<<<<_______>>>>>>>,,,,,,,,<<
1 aAaaauaaAaaaaaaaauaCuCgUAUA.aucucgggAAUAUGGcccgagaGUuUCUACCa 59
A ++U+A A A ++ C :: AUA +:C::::: UA GG:::::G:GU AC::
203 CAGUUUUAUCGAUCACUUCCCUGCAUAgUCCGGCAAUUUACGGUUGCCGGGUAGAAACUU 262
<<<<<_______>>>>>>>,,))))))))::::::::::::::
60 GgcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
+::::CC UA :::: ::A U :: G + + U++++U +UU
263 AUGGGCCAUAUUCCCA-AGAUUAUAUGAGGUCGUGUUUUGAUU 304
sequence: gi|633168|emb|X83878.1|
hit 0 : 168 267 79.36 bits
hit 1 : 168 267 79.36 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+ A A++A AA A AA:AC+C:UAUAAU::CG:G AUAUGGC:CG::AGUUUCUACC:G
168 UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGG 227
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
CA CCGUAAA UG C:GACUA:G+GU:A A+U A+
228 GCA-CCGUAAA-UGUCCGACUAUGGGUGAGCAAUGGAACCGC 267
hit 0 : 270 171 2.25 bits
hit 1 : 270 171 2.25 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+ + A +:AC C:UA +::: :: UA GG :: :::GU AC: G
2144 CGUGCGGUUCCAUUGCUCACCCAUA-GUCGGACAU-UUACGG-UGCCCGGUAGAAACUUG 2200
<<<<_______>>>>>>>,,.))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGAC.UAcGaGuaAauauuaaauauuu 102
::::CC UA ::::C : UA:G GU: + U+++AUAUU
2201 CGUGCCAUAUCCACGCGAUUaUAUGAGUGUUCCUAUUAUAUUG 2243
CPU time (search) : 56.03u 0.38s 00:00:56.41 Elapsed: 00:00:58
CYK memory : 0.66 MB
|
