1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164
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CPU time (band calc): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00
sequence: gi|2239287|gb|U51115.1|BSU51115
hit 0 : 15589 15691 78.40 bits
hit 1 : 15589 15691 78.40 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A+ A+A+ AAAA A :CUC:UAUAAU: :GGGAAUAUGGCCC: :AGUUUCUACC:G
15589 CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCG 15648
<<<<_______>>>>>>>,,)))).))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcG.aGuaAauauuaaauauuu 102
GCAACCGUAAAUUGCC:GACUA:G AG: AA + ++ +++++
15649 GCAACCGUAAAUUGCCGGACUAUGcAGGGAAGUGAUCGAUAAA 15691
hit 2 : 13198 13294 5.41 bits
hit 3 : 13198 13294 5.41 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+A+ +U + AAAA AA : :U:::A AA:C::::G A UGGC::::G: UUU U ::
13198 UAUCUUCUUAAAAUAAGGAAUGAAAAAACCAGCUGCAC-UGGCAGCUGGUUUUUUUUGU- 13255
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
: C AA :U+++:: U:::A: : AUAU+ U +U
13256 ---UGCAAAAGAUAAAACCAUUUCAUACGAUAUACCGUCAUG 13294
hit 4 : 11655 11756 81.29 bits
hit 5 : 11655 11756 81.29 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A AAAU AAA+AA A+ : CGUAUAAU::CG:GAAUAUGGC:CG::AGU UCUACCA:
11655 AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAA 11714
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
GC ACCGUAAAU GC:UGACUACG : AU+U +++ UUU
11715 GCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUU 11756
hit 0 : 825 748 2.84 bits
hit 1 : 825 748 2.84 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+AAAA+ AA AAAA A: ::C:U:U A UG C+ A A UCUAC
15073 UAAAAACAACAAAAGGAGCUGCUUUUUA-----------UGCUCACACACGAUCUAC--- 15118
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
G AAA +AC:A:G:: :A ++UU AU+U+U
15119 ----AUGAAAA------AACAAAGCAUUACAUUUCCAUUUAU 15150
hit 2 : 4125 4023 1.38 bits
hit 3 : 4125 4023 1.38 bits
:::::::::::::::::((((((((,,,<<<<<<<_______.>>>.>>>>,,,,,,,,<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGG.ccc.gagaGUuUCUACC 58
AAA +AAA A A AA: :U:::AUAA :+:G:: AU U ::C :+: UUUC AC
11773 CAAACAAAACACUACAAAUUUGAAAUAAGCUGGUAUAUUUUCuUACaCGAAUUUUCGAC- 11831
<<<<<<_______>>>...>>>>,,))))))))::::::::::::::
59 aGgcaaCCGUAAAuug...cCuGACUAcGaGuaAauauuaaauauuu 102
:AAC GUA AUU: + +GA U:::A: :A+ AU+A+AU+ +
11832 ---AAACUGUAUAUUUaugAUAGAGUUUCAAUUAUCAUAAUAUUCAG 11875
hit 4 : 8105 8018 1.70 bits
hit 5 : 8105 8018 1.70 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A+A A +A AA U:::AU A UAUGGC ++A+ GU UC A
7793 GAUACGGAUUACGGCAAAAGUGGCAUCA---------UAUGGCGUAAAGGUAUCAAG--- 7840
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
A CGUAA U+C ACU:::A AA+A +AAA+ +++
7841 --AAUCGUAAUAUACGCUACUGUCAUCAAAAAGAAAAACAAA 7880
hit 6 : 11759 11658 9.64 bits
hit 7 : 11759 11658 9.64 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A AA+ AAA AAA+ : CGUA +::::: : UA GG: :::::GU AC: G
4139 AUCAAACGAAAGAAAUGUUUACGUA-GUCAAGCCAUUUACGGUAGCUUGGUAGAGACUUG 4197
<<<<_______>>>>>>>,,.))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGAC.UAcGaGuaAauauuaaauauuu 102
:: :CC UA : ::C : UACG : AU UUA++U +UU
4198 CGAGCCAUAUUCCCGCGAUUaUACGAAUUCAUCUUAUUUGAUU 4240
hit 8 : 13350 13253 0.79 bits
hit 9 : 13350 13253 0.79 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+AA UA AA A + :A +C:U: C::: AA :::G G C C:A
2548 UAAGGUACCGAACAGUCAAGUCAUU---UCCAUUUAAGUAAAGCAUGGCGGCACAUCUAC 2604
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
: :AC GUA AU: : U:A :A:G+ U: AU UU++ A+ +
2605 AUGACGGUAUAUCGUAUGA-AAUGGUUUUAUCUUUUGCAACA 2645
hit 10 : 13846 13740 6.35 bits
hit 11 : 13846 13740 6.35 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,.....
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCU..... 55
A A+A+A A AA AA:A :::A A :C ::::A A G :::: G: UUCU
2052 CAGCAAAUACACAAGAACAACUAAAAACCCGUCAUAGAAAGCAUGAUGGCGUUCUccgaa 2111
,,<<<<<<<_______>>>>>>>,,))))))))::::::::::::::
56 ACCaGgcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
ACC::GC :CCG : GC::G CU::: U:AA+ +A++ ++
2112 ACCGAGCGGCCGAUUCCAGCUUGCCUUUAACUGAAACCAAUUCCCAA 2158
hit 12 : 14215 14125 0.90 bits
hit 13 : 14215 14125 0.90 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
AA AA AA A :+ :UAUA+U: :+++ A A GG : :AGU
1683 AAGCGGAAUCAACGACGCCGUAAUAUAUUCAGAAAUAAACGG---CCAAGUCA------- 1732
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
C::CCGUAAA::GC+ CUA: +: ++ U+ AA+++ +
1733 -CUGCCGUAAACAGCAGCGCUAUCGCAACUACUGCAAAUACA 1773
hit 14 : 15695 15594 7.88 bits
hit 15 : 15695 15594 7.88 bits
:::::::::::::::::((((((((,,.,<<<<<<<_______>>>>>>>,,,,,,,,<<
1 aAaaauaaAaaaaaaaauaCuCgUAUA.aucucgggAAUAUGGcccgagaGUuUCUACCa 59
A ++U+A A A ++ C :: AUA +:C::::: UA GG:::::G:GU AC::
203 CAGUUUUAUCGAUCACUUCCCUGCAUAgUCCGGCAAUUUACGGUUGCCGGGUAGAAACUU 262
<<<<<_______>>>>>>>,,))))))))::::::::::::::
60 GgcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
+::::CC UA :::: ::A U :: G + + U++++U +UU
263 AUGGGCCAUAUUCCCA-AGAUUAUAUGAGGUCGUGUUUUGAUU 304
sequence: gi|633168|emb|X83878.1|
hit 0 : 168 267 79.36 bits
hit 1 : 168 267 79.36 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+ A A++A AA A AA:AC+C:UAUAAU::CG:G AUAUGGC:CG::AGUUUCUACC:G
168 UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGG 227
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
CA CCGUAAA UG C:GACUA:G+GU:A A+U A+
228 GCA-CCGUAAA-UGUCCGACUAUGGGUGAGCAAUGGAACCGC 267
hit 0 : 270 171 2.25 bits
hit 1 : 270 171 2.25 bits
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+ + A +:AC C:UA +::: :: UA GG :: :::GU AC: G
2144 CGUGCGGUUCCAUUGCUCACCCAUA-GUCGGACAU-UUACGG-UGCCCGGUAGAAACUUG 2200
<<<<_______>>>>>>>,,.))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGAC.UAcGaGuaAauauuaaauauuu 102
::::CC UA ::::C : UA:G GU: + U+++AUAUU
2201 CGUGCCAUAUCCACGCGAUUaUAUGAGUGUUCCUAUUAUAUUG 2243
CPU time (search) : 56.03u 0.38s 00:00:56.41 Elapsed: 00:00:58
CYK memory : 0.66 MB
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