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BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
RID: 1036160600-011802-21377
Query= test_result
(8 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
1,220,597 sequences; 388,937,031 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|NP_065733.1|CYT19 (NM_020682) Cyt19 protein; likely ortholog of r... 31 0.18
emb|XP_053690.4|Cyt19 (XM_053690) similar to Cyt19 protein; likely or... 31 0.18
dbj|NP_056277.2|DKFZP586L0724 (NM_015462) DKFZP586L0724 protein [Homo sapiens... 21 113
pir||T14789 hypothetical protein DKFZp586L0724.1 - human >gi|581... 21 113
prf||XP_064862.2 (XM_064862) similar to pheromone receptor [Homo... 21 152
pdb|BAB13968.1|1 (AK022138) unnamed protein product [Homo sapiens] 21 204
sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 pr... 21 204
pat|US|NP_002079.2 (NM_002088) glutamate receptor, ionotropic, kai... 21 204
bbs|NP_079463.2| (NM_025187) hypothetical protein FLJ12076 [Homo... 21 204
gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiat... 21 204
ref|XP_051877.1| (XM_051877) similar to NS1-binding protein-like... 20 274
lcl|AAH16829.1| (BC016829) Unknown (protein for IMAGE:413... 20 274
gi|1|gb|NP_065733.1|CYT19 (NM_020682) Cyt19 protein; likely ortholog of r... 31 0.18
gi|2|emb|XP_053690.4|Cyt19 (XM_053690) similar to Cyt19 protein; likely or... 31 0.18
gi|3|dbj|NP_056277.2|DKFZP586L0724 (NM_015462) DKFZP586L0724 protein [Homo sapiens... 21 113
gi|4|pir||T14789 hypothetical protein DKFZp586L0724.1 - human >gi|581... 21 113
gi|5|prf||XP_064862.2 (XM_064862) similar to pheromone receptor [Homo... 21 152
gi|6|pdb|BAB13968.1|1 (AK022138) unnamed protein product [Homo sapiens] 21 204
gi|7|sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 pr... 21 204
gi|8|pat|US|NP_002079.2 (NM_002088) glutamate receptor, ionotropic, kai... 21 204
gi|9|bbs|NP_079463.2| (NM_025187) hypothetical protein FLJ12076 [Homo... 21 204
gi|10|gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiat... 21 204
gi|11|ref|XP_051877.1| (XM_051877) similar to NS1-binding protein-like... 20 274
gi|12|lcl|AAH16829.1| (BC016829) Unknown (protein for IMAGE:413... 20 274
MY_test_ID (BC016829) Unknown (protein for IMAGE:413... 20 274
ALIGNMENTS
>pir||T14789 hypothetical protein DKFZp586L0724.1 - human
emb|CAB53709.1| (AL110271) hypothetical protein [Homo sapiens]
gb|AAH01726.1|AAH01726 (BC001726) Similar to DKFZP586L0724 protein [Homo sapiens]
Length = 314
Score = 21.4 bits (43), Expect = 113
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 1 LMFDANFT 8
L+ DANFT
Sbjct: 247 LLLDANFT 254
>gb|NP_065733.1|CYT19 (NM_020682) Cyt19 protein; likely ortholog of rat methyltransferase
Cyt19; S-adenosylmethionine:arsenic (III)
methyltransferase [Homo sapiens]
gb|AAG09731.1|AF226730_1 (AF226730) Cyt19 [Homo sapiens]
Length = 338
Score = 30.8 bits (65), Expect = 0.18
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 1 LMFDANFT 8
LMFDANFT
Sbjct: 286 LMFDANFT 293
>emb|XP_053690.4|Cyt19 (XM_053690) similar to Cyt19 protein; likely ortholog of rat
methyltransferase Cyt19; S-adenosylmethionine:arsenic
(III) methyltransferase [Homo sapiens]
Length = 375
Score = 30.8 bits (65), Expect = 0.18
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 1 LMFDANFT 8
LMFDANFT
Sbjct: 286 LMFDANFT 293
>dbj|NP_056277.2|DKFZP586L0724 (NM_015462) DKFZP586L0724 protein [Homo sapiens]
dbj|BAB14647.1| (AK023702) unnamed protein product [Homo sapiens]
Length = 719
Score = 21.4 bits (43), Expect = 113
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 1 LMFDANFT 8
L+ DANFT
Sbjct: 652 LLLDANFT 659
>prf||XP_064862.2 (XM_064862) similar to pheromone receptor [Homo sapiens]
Length = 370
Score = 21.0 bits (42), Expect = 152
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 2 MFDAN 6
MFDAN
Sbjct: 348 MFDAN 352
>pdb|BAB13968.1|1 (AK022138) unnamed protein product [Homo sapiens]
Length = 258
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 45 LMFDA 49
>sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 precursor (Glutamate
receptor KA-2) (KA2) (Excitatory amino acid receptor 2)
(EAA2)
pir||I57936 glutamate receptor subunit - human
gb|AAB22591.1| (S40369) glutamate receptor subunit; EAA2; excitatory amino acid
receptor 2 [Homo sapiens]
Length = 980
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 306 LMFDA 310
>pat|US|NP_002079.2 (NM_002088) glutamate receptor, ionotropic, kainate 5 [Homo
sapiens]
emb|CAC80547.1| (AJ249209) kainate receptor subunit KA2a [Homo sapiens]
Length = 981
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 306 LMFDA 310
>bbs|NP_079463.2| (NM_025187) hypothetical protein FLJ12076 [Homo sapiens]
sp|Q9BSU1|U183_HUMAN UPF0183 protein
gb|AAH04556.1|AAH04556 (BC004556) Similar to CG7083 gene product [Homo sapiens]
gb|AAK96888.1| (AF176088) lin-10-like protein [Homo sapiens]
Length = 422
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 67 LMFDA 71
Score = 16.8 bits (32), Expect = 2880
Identities = 4/5 (80%), Positives = 5/5 (100%)
Query: 2 MFDAN 6
+FDAN
Sbjct: 296 LFDAN 300
>gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiation factor 2
precursor; IF-2mt [Homo sapiens]
sp|P46199|IF2M_HUMAN Translation initiation factor IF-2, mitochondrial precursor
(IF-2Mt) (IF-2(Mt))
pir||A55628 translation initiation factor IF-2 precursor, mitochondrial - human
gb|AAA67038.1| (L34600) initiation factor 2 [Homo sapiens]
gb|AAM14617.1|AF494407_1 (AF494407) mitochondrial translation-initiation factor 2 [Homo
sapiens]
gb|AAM70196.1| (AF495546) translation initiation factor 2 [Homo sapiens]
Length = 727
Score = 20.6 bits (41), Expect = 204
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 1 LMFDAN 6
LMFD N
Sbjct: 398 LMFDEN 403
>ref|XP_051877.1| (XM_051877) similar to NS1-binding protein-like protein [Homo
sapiens]
dbj|BAA74873.1| (AB020657) KIAA0850 protein [Homo sapiens]
emb|CAB72329.1| (AL078644) bG279B7.1.1 (NS1-binding protein (KIAA0850, BTB/POZ
domain and Kelch motifs containing protein)) [Homo
sapiens]
gb|AAG43485.1| (AF205218) NS1-binding protein-like protein [Homo sapiens]
Length = 642
Score = 20.2 bits (40), Expect = 274
Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)
Query: 1 LMF-DANF 7
LMF D NF
Sbjct: 7 LMFEDENF 14
>lcl|AAH16829.1| (BC016829) Unknown (protein for IMAGE:4132295) [Homo sapiens]
Length = 391
Score = 20.2 bits (40), Expect = 274
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 3 FDANFT 8
FD NFT
Sbjct: 32 FDTNFT 37
>gi|1|gb|NP_065733.1|CYT19 (NM_020682) Cyt19 protein; likely ortholog of rat methyltransferase
Cyt19; S-adenosylmethionine:arsenic (III)
methyltransferase [Homo sapiens]
gb|AAG09731.1|AF226730_1 (AF226730) Cyt19 [Homo sapiens]
Length = 338
Score = 30.8 bits (65), Expect = 0.18
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 1 LMFDANFT 8
LMFDANFT
Sbjct: 286 LMFDANFT 293
>gi|2|emb|XP_053690.4|Cyt19 (XM_053690) similar to Cyt19 protein; likely ortholog of rat
methyltransferase Cyt19; S-adenosylmethionine:arsenic
(III) methyltransferase [Homo sapiens]
Length = 375
Score = 30.8 bits (65), Expect = 0.18
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 1 LMFDANFT 8
LMFDANFT
Sbjct: 286 LMFDANFT 293
>gi|3|dbj|NP_056277.2|DKFZP586L0724 (NM_015462) DKFZP586L0724 protein [Homo sapiens]
dbj|BAB14647.1| (AK023702) unnamed protein product [Homo sapiens]
Length = 719
Score = 21.4 bits (43), Expect = 113
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 1 LMFDANFT 8
L+ DANFT
Sbjct: 652 LLLDANFT 659
>gi|4|pir||T14789 hypothetical protein DKFZp586L0724.1 - human
emb|CAB53709.1| (AL110271) hypothetical protein [Homo sapiens]
gb|AAH01726.1|AAH01726 (BC001726) Similar to DKFZP586L0724 protein [Homo sapiens]
Length = 314
Score = 21.4 bits (43), Expect = 113
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 1 LMFDANFT 8
L+ DANFT
Sbjct: 247 LLLDANFT 254
>gi|5|prf||XP_064862.2 (XM_064862) similar to pheromone receptor [Homo sapiens]
Length = 370
Score = 21.0 bits (42), Expect = 152
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 2 MFDAN 6
MFDAN
Sbjct: 348 MFDAN 352
>gi|6|pdb|BAB13968.1|1 (AK022138) unnamed protein product [Homo sapiens]
Length = 258
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 45 LMFDA 49
>gi|7|sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 precursor (Glutamate
receptor KA-2) (KA2) (Excitatory amino acid receptor 2)
(EAA2)
pir||I57936 glutamate receptor subunit - human
gb|AAB22591.1| (S40369) glutamate receptor subunit; EAA2; excitatory amino acid
receptor 2 [Homo sapiens]
Length = 980
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 306 LMFDA 310
>gi|8|pat|US|NP_002079.2 (NM_002088) glutamate receptor, ionotropic, kainate 5 [Homo
sapiens]
emb|CAC80547.1| (AJ249209) kainate receptor subunit KA2a [Homo sapiens]
Length = 981
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 306 LMFDA 310
>gi|9|bbs|NP_079463.2| (NM_025187) hypothetical protein FLJ12076 [Homo sapiens]
sp|Q9BSU1|U183_HUMAN UPF0183 protein
gb|AAH04556.1|AAH04556 (BC004556) Similar to CG7083 gene product [Homo sapiens]
gb|AAK96888.1| (AF176088) lin-10-like protein [Homo sapiens]
Length = 422
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 67 LMFDA 71
Score = 16.8 bits (32), Expect = 2880
Identities = 4/5 (80%), Positives = 5/5 (100%)
Query: 2 MFDAN 6
+FDAN
Sbjct: 296 LFDAN 300
>gi|10|gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiation factor 2
precursor; IF-2mt [Homo sapiens]
sp|P46199|IF2M_HUMAN Translation initiation factor IF-2, mitochondrial precursor
(IF-2Mt) (IF-2(Mt))
pir||A55628 translation initiation factor IF-2 precursor, mitochondrial - human
gb|AAA67038.1| (L34600) initiation factor 2 [Homo sapiens]
gb|AAM14617.1|AF494407_1 (AF494407) mitochondrial translation-initiation factor 2 [Homo
sapiens]
gb|AAM70196.1| (AF495546) translation initiation factor 2 [Homo sapiens]
Length = 727
Score = 20.6 bits (41), Expect = 204
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 1 LMFDAN 6
LMFD N
Sbjct: 398 LMFDEN 403
>gi|11|ref|XP_051877.1| (XM_051877) similar to NS1-binding protein-like protein [Homo
sapiens]
dbj|BAA74873.1| (AB020657) KIAA0850 protein [Homo sapiens]
emb|CAB72329.1| (AL078644) bG279B7.1.1 (NS1-binding protein (KIAA0850, BTB/POZ
domain and Kelch motifs containing protein)) [Homo
sapiens]
gb|AAG43485.1| (AF205218) NS1-binding protein-like protein [Homo sapiens]
Length = 642
Score = 20.2 bits (40), Expect = 274
Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)
Query: 1 LMF-DANF 7
LMF D NF
Sbjct: 7 LMFEDENF 14
>gi|12|lcl|AAH16829.1| (BC016829) Unknown (protein for IMAGE:4132295) [Homo sapiens]
Length = 391
Score = 20.2 bits (40), Expect = 274
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 3 FDANFT 8
FD NFT
Sbjct: 32 FDTNFT 37
>MY_test_ID (BC016829) Unknown (protein for IMAGE:4132295) [Homo sapiens]
Length = 391
Score = 20.2 bits (40), Expect = 274
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 3 FDANFT 8
FD NFT
Sbjct: 32 FDTNFT 37
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Oct 31, 2002 3:52 AM
Number of letters in database: 388,937,031
Number of sequences in database: 1,220,597
Lambda K H
0.328 0.274 1.77
Gapped
Lambda K H
0.294 0.110 0.610
Matrix: PAM30
Gap Penalties: Existence: 9, Extension: 1
Number of Hits to DB: 660,045
Number of Sequences: 1220597
Number of extensions: 3731
Number of successful extensions: 3028
Number of sequences better than 200000.0: 2850
Number of HSP's better than 200000.0 without gapping: 2850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3028
length of query: 8
length of database: 35,444,647
effective HSP length: 0
effective length of query: 9
effective length of database: 35,444,647
effective search space: 319001823
effective search space used: 319001823
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 35 (14.8 bits)
X3: 58 (24.6 bits)
S1: 18 (10.4 bits)
S2: 18 (10.8 bits)
|
