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Command: /bio/sw/glimmer3/bin/glimmer3 -o 50 -g 110 -t 30 ../BCTDNA Glimmer3.icm Glimmer3
Sequence file = ../BCTDNA
ICM model file = Glimmer3.icm
Excluded regions file = none
List of orfs file = none
Truncated orfs = false
Circular genome = true
Minimum gene length = 110 bp
Maximum overlap bases = 50
Input is NOT separate orfs
Threshold score = 30
Use first start codon = false
Start codons = atg,gtg,ttg
Start probs = 0.600,0.300,0.100
Stop codons = taa,tag,tga
>BCTDNA
Sequence length = 29940
GC percentage = 33.3%
Ignore independent score on orfs longer than 482
----- Start ----- --- Length ---- ------------- Scores -------------
ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 NC
0001 +1 29263 29263 9 684 684 9.68 99 99 - - - - - 0 1.00
-1 984 894 769 213 123 -9.85 0 99 - - 0 - - 0 1.00
0002 +1 292 298 1623 1329 1323 8.26 99 99 - - - - - 0 1.00
+2 1592 1706 1840 246 132 -5.10 0 - 0 - - - - 99 1.00
+3 1860 1881 2003 141 120 -2.68 0 - 75 0 - 0 - 23 1.00
0003 +2 1841 1949 2098 255 147 6.59 99 - 99 - - 0 - 0 1.00
-2 2152 1993 1862 288 129 -3.37 0 - 44 0 - 0 - 55 1.00
+3 2004 2040 2177 171 135 -1.77 0 - - 0 - - - 99 1.00
0004 -1 2385 2349 2230 153 117 4.69 97 - - - 97 - - 2 1.00
-2 3253 3235 3095 156 138 -9.03 0 - - 0 - 0 - 99 1.00
+3 3087 3126 3257 168 129 -9.09 0 - - 0 - 0 - 99 1.00
-2 3463 3439 3320 141 117 7.18 1 - - 98 - 1 - 0 1.00
+1 3550 3589 3702 150 111 -0.25 0 0 - 99 - - - 0 1.00
-1 4038 4026 3913 123 111 -10.13 0 - - 99 0 - - 0 1.00
+1 4171 4192 4314 141 120 -8.48 0 0 - 99 - 0 0 0 1.00
0005 +3 3258 3279 4400 1140 1119 10.20 99 - - 99 - - - 0 1.00
-2 4405 4300 4181 222 117 -0.45 0 0 - 99 - 0 0 0 1.00
-3 4481 4436 4320 159 114 -12.02 0 - - - - - 0 99 1.00
-1 5025 4962 4798 225 162 -6.25 0 - 0 - 0 - - 99 1.00
+2 4790 4913 5029 237 114 -7.57 0 - 0 - 0 - - 99 1.00
0006 +1 5038 5062 6159 1119 1095 9.92 99 99 - - - - - 0 1.00
-3 6386 6368 6213 171 153 -1.23 0 0 - 99 - - 0 0 1.00
+1 6217 6295 6435 216 138 -7.86 0 0 - 99 - - - 0 1.00
-2 6487 6469 6335 150 132 2.90 0 - - 99 - 0 - 0 1.00
0007 +3 6105 6156 6620 513 462 12.86 99 - - 99 - - - 0 1.00
-2 6880 6856 6740 138 114 -9.49 0 - 99 0 - 0 - 0 1.00
+3 7062 7062 7190 126 126 -3.41 0 - 99 0 - 0 0 0 1.00
-2 7267 7162 7034 231 126 -8.57 0 - 99 - - 0 0 0 1.00
+3 7299 7299 7418 117 117 -2.08 0 - 99 0 - - - 0 1.00
-2 7525 7468 7334 189 132 -0.14 0 - 99 - - 0 - 0 1.00
+3 7896 7920 8039 141 117 -7.88 0 - 99 0 - 0 0 0 1.00
-3 8147 8069 7872 273 195 -0.71 0 - 99 - - - 0 0 1.00
-2 8305 8293 8120 183 171 -10.93 0 - 99 - - 0 - 0 1.00
0008 +2 6674 6686 8605 1929 1917 12.34 99 - 99 - - - - 0 1.00
-2 8986 8929 8816 168 111 -9.33 0 - 99 - - 0 - 0 1.00
+3 9003 9084 9200 195 114 -11.31 0 - 99 0 - - - 0 1.00
-2 10417 10315 10196 219 117 -9.22 0 - 99 - - 0 - 0 1.00
-2 10576 10576 10418 156 156 -7.32 0 - 99 - - 0 - 0 1.00
-1 10851 10728 10573 276 153 1.00 0 - 99 - 0 - - 0 1.00
0009 +2 8606 8624 11128 2520 2502 12.77 99 - 99 - - - - 0 1.00
-3 11399 11345 11202 195 141 -9.23 0 - - 99 - - 0 0 1.00
-2 11584 11536 11393 189 141 -3.32 0 - - 99 - 0 - 0 1.00
0010 +3 11118 11133 12122 1002 987 11.55 99 - - 99 - - - 0 1.00
+1 11974 11974 12132 156 156 -4.16 0 0 - - - 54 - 45 1.00
0011 -2 12142 12130 11918 222 210 2.27 92 - - - - 92 - 7 1.00
-3 12149 12143 12009 138 132 -5.42 0 - - - - 56 0 43 1.00
-2 12469 12355 12164 303 189 -7.16 0 - - 20 - 0 - 79 1.00
0012 +3 12123 12273 12473 348 198 10.08 99 - - 99 - 0 - 0 1.00
-3 12494 12470 12306 186 162 -4.46 0 - - 99 - 0 0 0 1.00
+3 12477 12507 12665 186 156 -5.68 0 - - 0 - - - 99 1.00
-3 13169 13166 12969 198 195 2.54 0 99 - - - - 0 0 1.00
0013 +1 12670 12715 13452 780 735 11.22 99 99 - - - - - 0 1.00
-1 13470 13449 13291 177 156 -7.69 0 99 - - 0 - - 0 1.00
0014 +3 13656 13722 13841 183 117 4.01 92 - - 92 - - - 7 1.00
-3 13889 13871 13737 150 132 -1.62 1 - - - - - 1 98 1.00
+1 13762 13774 13920 156 144 -3.79 0 0 - - - - - 99 1.00
+2 13928 13949 14077 147 126 3.00 0 0 0 - 99 - - 0 1.00
+1 13921 13963 14091 168 126 -10.74 0 0 - - 99 - - 0 1.00
+3 14103 14142 14333 228 189 -3.47 0 - - 0 99 - - 0 1.00
-3 14603 14594 14436 165 156 -3.77 0 - - - 99 - 0 0 1.00
0015 -1 14847 14805 13804 1041 999 5.49 99 - - - 99 - - 0 1.00
-2 15682 15676 15527 153 147 -1.39 0 - - 0 - 0 99 0 1.00
0016 +3 15210 15219 15749 537 528 -12.48 0 0 - 0 - - 99 0 1.00
0017 -3 15791 15776 15216 573 558 11.35 99 - - - - - 99 0 1.00
+2 17198 17207 17338 138 129 -3.68 0 - 0 99 0 - - 0 1.00
-1 17370 17271 17155 213 114 3.30 0 - - 99 0 - - 0 1.00
0018 +3 15849 15948 17462 1611 1512 9.36 99 - - 99 - - - 0 1.00
-2 17677 17623 17480 195 141 -1.26 1 - - 34 - 1 - 64 1.00
0019 +3 17463 17484 18377 912 891 6.43 99 - - 99 - - - 0 1.00
-3 18620 18554 18435 183 117 -5.09 0 0 - - 99 - 0 0 1.00
-3 19040 18995 18882 156 111 -2.90 0 - - - 99 - 0 0 1.00
+3 18978 19014 19127 147 111 1.67 0 - - 0 99 - - 0 1.00
-3 19235 19211 19041 192 168 1.29 0 - - - 99 - 0 0 1.00
-2 19357 19357 19208 147 147 -3.27 0 - - 0 99 0 - 0 1.00
+3 19188 19269 19394 204 123 -2.25 0 - - 0 98 - - 1 1.00
0020 -1 19449 19407 18319 1128 1086 7.49 99 - - - 99 - - 0 1.00
-2 19873 19843 19715 156 126 -8.77 0 - - 0 - 0 - 99 1.00
+3 19719 19740 19898 177 156 -7.39 0 - - 0 - - - 99 1.00
-2 20185 20110 19973 210 135 -0.77 0 - - 98 - 0 - 1 1.00
0021 +3 19977 19980 20195 216 213 3.39 99 - - 99 - - - 0 1.00
-1 20445 20418 20302 141 114 -3.04 0 - 0 - 0 99 - 0 1.00
+2 20261 20309 20449 186 138 -4.98 0 - 0 - 0 99 - 0 1.00
+1 20404 20413 20604 198 189 -5.81 0 0 - - - 99 - 0 1.00
+3 20469 20583 20759 288 174 2.71 0 - - 0 - 99 - 0 1.00
0022 -2 20824 20749 20186 636 561 9.10 99 - - - - 99 - 0 1.00
+1 20752 20773 20913 159 138 -3.20 0 0 0 - - - - 99 1.00
-1 21078 21039 20839 237 198 4.53 0 - 99 - 0 - - 0 1.00
+3 21063 21069 21215 150 144 -2.93 0 - 99 0 - - - 0 1.00
0023 +2 20765 20810 21706 939 894 11.73 99 - 99 - - - - 0 1.00
-2 22108 22051 21911 195 138 -4.96 0 - 99 - - 0 - 0 1.00
+3 21918 21945 22112 192 165 -9.58 0 - 99 0 - 0 - 0 1.00
+3 22113 22116 22241 126 123 -1.18 0 - 99 0 0 - 0 0 1.00
-3 22277 22187 22017 258 168 3.69 0 - 99 - - - 0 0 1.00
-1 22320 22194 22078 240 114 8.28 0 - 99 - 0 - 0 0 1.00
0024 +2 21845 21851 22354 507 501 10.64 99 - 99 - - - - 0 1.00
-2 22465 22462 22238 225 222 -1.02 1 - - - - 1 - 98 1.00
+1 22402 22420 22557 153 135 0.60 0 0 - 99 - - - 0 1.00
-2 22720 22681 22544 174 135 5.32 0 - - 99 - 0 - 0 1.00
+1 22657 22663 22779 120 114 -5.87 0 0 - 99 - - 0 0 1.00
0025 +3 22332 22359 23102 768 741 14.02 99 - - 99 - - - 0 1.00
-3 23501 23432 23268 231 162 -6.68 0 - - 99 - - 0 0 1.00
0026 +3 23112 23118 23726 612 606 11.58 99 - - 99 - - - 0 1.00
+1 23920 23920 24036 114 114 -9.23 0 0 - - - - - 99 1.00
0027 -2 24673 24670 24545 126 123 9.42 38 0 - 61 - 38 - 0 1.00
+1 24496 24586 24726 228 138 -4.39 0 0 - 99 - - - 0 1.00
-1 25095 25089 24964 129 123 -11.50 0 - - 99 0 - - 0 1.00
-3 25343 25304 25182 159 120 -19.97 0 - - 99 - - 0 0 1.00
+2 25208 25331 25447 237 114 -11.98 0 - 0 99 - - - 0 1.00
0028 +3 24150 24216 25898 1746 1680 11.26 99 - - 99 - - - 0 1.00
-2 26158 26125 25967 189 156 -6.07 0 - - - - 0 - 99 1.00
0029 +3 26055 26103 26219 162 114 2.53 65 - - 65 - - - 34 1.00
-3 26309 26249 26130 177 117 -1.20 3 - - - - - 3 96 1.00
-1 26370 26328 26209 159 117 -2.70 0 - - - 0 - - 99 1.00
0030 -2 26698 26593 26474 222 117 4.01 91 - - 0 - 91 - 8 1.00
-1 26703 26697 26554 147 141 -3.06 0 - - - 0 6 - 93 1.00
+2 26672 26684 26893 219 207 -1.12 1 - 1 - - - - 98 1.00
+2 26945 26954 27070 123 114 6.59 0 - 0 - 99 - - 0 1.00
0031 -1 27117 27090 26728 387 360 10.98 99 - - - 99 - - 0 1.00
+1 27904 27952 28095 189 141 -0.69 4 4 - - - - - 95 1.00
0032 +2 28001 28025 28144 141 117 1.77 53 - 53 - - - - 46 1.00
0033 -1 28272 28203 28078 192 123 1.32 35 - - - 35 - - 64 1.00
+1 28240 28240 28365 123 123 -9.11 0 0 - 99 - 0 - 0 1.00
0034 -2 28390 28276 28151 237 123 6.20 93 - - 5 - 93 - 0 1.00
-3 28544 28502 28380 162 120 -5.88 0 - - 99 - - 0 0 1.00
+1 28387 28417 28551 162 132 -3.22 0 0 - 71 - - - 28 1.00
+1 28591 28663 28794 201 129 -6.01 0 0 - 99 - - 0 0 1.00
-3 28988 28940 28809 177 129 -9.43 0 - - 99 - 0 0 0 1.00
-2 29005 28885 28763 240 120 4.66 0 - - 99 - 0 - 0 1.00
0035 +3 28155 28188 29198 1041 1008 7.00 99 - - 99 - - - 0 1.00
+1 28987 29119 29247 258 126 -7.99 0 0 - - - - - 99 1.00
-3 29579 29561 29427 150 132 3.22 0 99 - - - - 0 0 1.00
-2 29866 29836 29699 165 135 0.42 0 99 - 0 - 0 0 0 1.00
|
