File: LEGAL

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LEGAL NOTICE INFORMATION
------------------------

All the files in this distribution are covered under either the Ruby's
license (see the file COPYING) or public-domain except some files
mentioned below.


setup.rb:

 Copyright (c) 2000-2006 Minero Aoki

 This program is free software.
 You can distribute/modify this program under the terms of
 the GNU LGPL, Lesser General Public License version 2.1.


sample/any2fasta.rb:

   Copyright (C) 2006 Pjotr Prins <p@bioruby.org>

  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.


sample/biofetch.rb:

   Copyright (C) 2002-2004 KATAYAMA Toshiaki <k@bioruby.org>

  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.


sample/enzymes.rb:

   Copyright (C) 2006 Pjotr Prins <p@bioruby.org> and
   Trevor Wennblom <trevor@corevx.com>

  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.


sample/fasta2tab.rb:
sample/fsplit.rb:
sample/gb2tab.rb:
sample/genes2nuc.rb:
sample/genes2pep.rb:
sample/genes2tab.rb:
sample/genome2tab.rb:
sample/gt2fasta.rb:
sample/ssearch2tab.rb:
sample/tfastx2tab.rb:
sample/vs-genes.rb:

   Copyright (C) 2001 KATAYAMA Toshiaki <k@bioruby.org>

  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.


sample/fastagrep.rb:
sample/fastasort.rb:
sample/na2aa.rb:

   Copyright (C) 2008 KATAYAMA Toshiaki <k@bioruby.org> & Pjotr Prins

  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.


sample/gb2fasta.rb:

   Copyright (C) 2001 KATAYAMA Toshiaki <k@bioruby.org>
   Copyright (C) 2002 Yoshinori K. Okuji <o@bioruby.org>

  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.


sample/gbtab2mysql.rb:
sample/genome2rb.rb:
sample/pmfetch.rb:
sample/pmsearch.rb:

   Copyright (C) 2002 KATAYAMA Toshiaki <k@bioruby.org>

  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.


sample/tdiary.rb:

   Copyright (C) 2003 KATAYAMA Toshiaki <k@bioruby.org>
                      Mitsuteru C. Nakao <n@bioruby.org>
                      Itoshi NIKAIDO  <itoshi@gsc.riken.go.jp>
                      Takeya KASUKAWA <kasukawa@gsc.riken.go.jp>

  This library is free software; you can redistribute it and/or
  modify it under the terms of the GNU Lesser General Public
  License as published by the Free Software Foundation; either
  version 2 of the License, or (at your option) any later version.


test/data/uniprot/p53_human.uniprot:

   This Swiss-Prot entry is copyright. It is produced through a collaboration
   between  the Swiss Institute of Bioinformatics  and the  EMBL outstation -
   the European Bioinformatics Institute.  There are no  restrictions on  its
   use as long as its content is in no way modified and this statement is not
   removed.


GPL:

 Copyright (C) 1989, 1991 Free Software Foundation, Inc.
                       59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 Everyone is permitted to copy and distribute verbatim copies
 of this license document, but changing it is not allowed.


LGPL:

 Copyright (C) 1991, 1999 Free Software Foundation, Inc.
     59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 Everyone is permitted to copy and distribute verbatim copies
 of this license document, but changing it is not allowed.