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|
####### Makefile for "BioSig for C/C++" #####################
###
### $Id$
### Copyright (C) 2006,2007,2008,2009 Alois Schloegl <a.schloegl@ieee.org>
### This file is part of the "BioSig for C/C++" repository
### (biosig4c++) at http://biosig.sf.net/
###
##############################################################
## make save2gdf - makes converter
## make mex4o - makes mexSLOAD, mexSOPEN for Octave (requires Octave-headers)
## make mex4m - makes mexSLOAD, mexSOPEN for Matlab (requires Matlab, mex -setup must be configured)
## make mex - mex4o and mex4m combined
## make libbiosig - makes libbiosig
## make biosig4python - makes python interface (requires Python)
## make biosig4java - makes Java interface (experimental)
## make biosig4php - makes PHP interface (experimental)
## make biosig4perl - makes perl interface (experimental)
## make biosig4ruby - makes ruby interface (experimental)
## make biosig4tcl - makes tcl/tk interface (experimental)
## make win32 - makes save2gdf.exe,libbiosig.lib,libbiosig.dll, for MSWindows, requires MinGW
## make sigviewer - makes sigviewer
###############################
# whether dynamic or static linking is used, can be controlled with
# LIBEXT. Setting it to 'a' links statically, 'so' links dynamically
#
LIBEXT = a
#LIBEXT = so
###############################
### User-specified options: its likely you want to change this
MEX_OPTION = -largeArrayDims # turn on for 64 bit Matlab, otherwise empty
PathToSigViewer = ../../src/sigviewer
PathToSigViewerWIN32 = ../../src/sigviewer4win32
PathToMinGW = $(HOME)/R:/src/mingw-cross-env
PathToMinGW64 = $(HOME)/R:/src/mce-w64
## default options
CC = gcc
CXX = g++
#DEFINES = -D=WITHOUT_SCP_DECODE
DEFINES = -D=HARDCODED_EVENTTABLE -D=__4HAERTEL__ -D=WITH_FAMOS #-D=WITH_FEF #D=WITH_CHOLMOD -D=WITH_ZLIB -D=WITH_PDP -D=WITH_DICOM #-D=WITH_GDCM #-D=WITH_GSL #-D=WITH_EEPROBE #-D=SOFTCODED_PHYSDIMTABLE # if you have zlib
#DEFINES += -D=CNT32
CFLAGS = -pipe -fPIC -Wall -O2 -Wextra $(DEFINES) # -I cntopenlib/include/
CXXFLAGS = -pipe -fPIC -Wall -O2 -Wextra $(DEFINES) # -I cntopenlib/include/
AR = ar crs
INCPATH = -I /usr/local/include/gdcm-2.0/
# ../gdcm-2.0.10/Source/DataStructureAndEncodingDefinition \
# ../gdcm-2.0.10/Source/InformationObjectDefinition \
# ../gdcm-2.0.10/Source/MediaStorageAndFileFormat \
# ../gdcm-2.0.10/Source/DataDictionary \
# ../gdcm-2.0.10/Source/Common
LINK = $(CXX)
LFLAGS_dynamic = -L/usr/local/lib/ -L.
LIBS_dynamic = -lbiosig
LFLAGS_static = -L/usr/local/lib/
LIBS_static = libbiosig.a
ifeq ($(LIBEXT),so)
LFLAGS = $(LFLAGS_dynamic)
LIBS = $(LIBS_dynamic)
else
LFLAGS = $(LFLAGS_static)
LIBS = $(LIBS_static)
endif
LDLIBS = -static-libgcc -static-libstdc++ -lws2_32 #-lgdcmDSED # static
LIBS += $(LDLIBS)
DELETE = rm
COPY = cp -f
TEMP_DIR = /tmp/
##########################################################
## set Matlab and Octave variables
ifneq ($(shell which matlab), )
MATLABDIR := $(dir $(shell readlink -f $(shell which matlab) ) )
MEX = $(MATLABDIR)mex
MEX_EXT := $(shell $(MATLABDIR)mexext)
endif
octVER = # default
OCT = mkoctfile$(octVER)
##########################################################
##########################################################
## set variables for Python
SWIG = swig
PYTHONVER = $(shell python -c "import sys; print sys.version[:3]")
##########################################################
##########################################################
## set variables for MinGW Crosscompiler: compile on linux binaries for windows
##
CROSS = i586-mingw32msvc-
CROSS = $(PathToMinGW)/usr/bin/i686-pc-mingw32-
CROSS64 = $(PathToMinGW64)/usr/bin/x86_64-w64-mingw32-
MinGWCC = $(CROSS)gcc
MinGWCXX = $(CROSS)g++
MinGWDEF = -D=HARDCODED_EVENTTABLE -D=__4HAERTEL__ -D=WITH_FAMOS -D=WITH_CHOLMOD #-D=WITH_ZLIB #-D=WITH_FEF #-D=WITH_DICOM #-D=WITH_GDCM #-D=WITH_GSL #-D=WITH_EEPROBE #-D=SOFTCODED_PHYSDIMTABLE
MinGWCFLAGS = -pipe -fPIC -O2 -D_REENTRANT -D=BUILD_DLL $(MinGWDEF) -I$(PathToMinGW)/usr/i686-pc-mingw32/include/
MinGWLIBS = win32/libbiosig.a -L$(PathToMinGW)/usr/i686-pc-mingw32/lib/ -lz -lws2_32 $(LDLIBS) # static
MinGWLINK = $(MinGWCXX)
##########################################################
# Versioning
MAJOR_VERSION := $(word 3, $(shell grep '\#define BIOSIG_VERSION_MAJOR' biosig.h))
MINOR_VERSION := $(word 3, $(shell grep '\#define BIOSIG_VERSION_MINOR' biosig.h))
STEPPING := $(word 3, $(shell grep '\#define BIOSIG_VERSION_STEPPING' biosig.h))
TODAY := $(shell date +%Y%m%d)
####### Output directory
OBJ = ./obj
BIN = $(DESTDIR)/usr/bin
LIB = $(DESTDIR)/usr/lib
####### Files
SOURCES = biosig.c \
XMLParser/tinyxml.cpp \
XMLParser/tinyxmlparser.cpp \
XMLParser/tinyxmlerror.cpp \
XMLParser/tinystr.cpp \
t210/sopen_scp_read.c \
t210/sopen_famos_read.c \
t210/sopen_alpha_read.c \
t210/scp-decode.cpp \
t220/sopen_scp_write.c \
t220/crc4scp.c \
t230/sopen_hl7aecg.c \
t240/sopen_fef_read.c \
test0/sandbox.c \
physicalunits.c \
biosig-network.c \
save2gdf.c \
biosig_client.c \
biosig_server.c
OBJECTS = \
crc4scp.o \
biosig.o \
getlogin_r.o \
tinyxml.o \
tinyxmlparser.o \
tinyxmlerror.o \
tinystr.o \
sopen_scp_read.o \
sopen_alpha_read.o \
sopen_scp_write.o \
sopen_hl7aecg.o \
biosig-network.o \
sandbox.o \
MinGWOBJECTS = \
win32/crc4scp.obj \
win32/biosig.obj \
win32/getlogin_r.obj \
win32/tinyxml.obj \
win32/tinyxmlparser.obj \
win32/tinyxmlerror.obj \
win32/tinystr.obj \
win32/sopen_scp_read.obj \
win32/sopen_alpha_read.obj \
win32/sopen_scp_write.obj \
win32/sopen_hl7aecg.obj \
win32/biosig-network.obj \
win32/sandbox.obj \
ifneq (,$(findstring WITH_FAMOS, $(DEFINES)))
OBJECTS += sopen_famos_read.o
endif
ifneq (,$(findstring WITH_FAMOS, $(MinGWDEF)))
MinGWOBJECTS += win32/sopen_famos_read.obj
endif
ifneq (,$(findstring WITH_FEF, $(DEFINES)))
OBJECTS += sopen_fef_read.o
endif
ifneq (,$(findstring WITH_FEF, $(MinGWDEF)))
MinGWOBJECTS += win32/sopen_fef_read.obj
endif
ifeq (,$(findstring WITHOUT_SCP_DECODE, $(DEFINES)))
OBJECTS += scp-decode.o
endif
ifeq (,$(findstring WITHOUT_SCP_DECODE, $(MinGWDEF)))
MinGWOBJECTS += win32/scp-decode.obj
endif
TARGET = save2gdf save2aecg save2scp libbiosig.a mex4o libbiosig.so
first: $(TARGET)
all: $(TARGET) mex4o biosig4python win32 biosig_client biosig_server mma java tcl perl php ruby #sigviewer
lib: libbiosig.a libbiosig.so win32/libbiosig.dll libbiosig.lib
#############################################################
# Compilation: Implicit, default rules
#############################################################
.SUFFIXES: .o .c .cpp .cc .cxx .C
.cpp.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.cc.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.cxx.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.C.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.c.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
%.o: %.c biosig.h biosig-dev.h
$(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
%.o: t210/%.c biosig.h biosig-dev.h
$(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
%.o: t220/%.c biosig.h biosig-dev.h
$(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
%.o: t230/%.c biosig.h biosig-dev.h
$(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
%.o: t240/%.c biosig.h biosig-dev.h
$(CC) -c $(CFLAGS) -I t240 $(INCPATH) -o "$@" "$<"
%.o: test0/%.c biosig.h biosig-dev.h
$(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
%.o: XMLParser/%.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
win32/%.obj: %.c biosig-dev.h biosig.h
$(MinGWCC) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
win32/%.obj: t210/%.c biosig-dev.h biosig.h
$(MinGWCC) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
win32/%.obj: t220/%.c biosig-dev.h biosig.h
$(MinGWCC) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
win32/%.obj: t230/%.c biosig-dev.h biosig.h
$(MinGWCC) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
win32/%.obj: t240/%.c biosig-dev.h biosig.h
$(MinGWCC) -c $(MinGWCFLAGS) -I t240 $(INCPATH) -o "$@" "$<"
win32/%.obj: XMLParser/%.cpp
$(MinGWCXX) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
#############################################################
# event table: conversion from ascii to C code
#############################################################
biosig.c: eventcodes.i
eventcodes.i : ../biosig/doc/eventcodes.txt
cat ../biosig/doc/eventcodes.txt | awk "-F\t" '/^[^#]/ {print "\t"$$1", \""$$2,"\","}' > eventcodes.i
#############################################################
# Compilation: exceptions, explicit rules
#############################################################
sandbox.o: test0/sandbox.c biosig.h
$(CXX) -c $(CFLAGS) $(INCPATH) -o sandbox.o test0/sandbox.c
sopen_fef_read.o: t240/sopen_fef_read.c biosig-dev.h biosig.h
# cd t240
# #asn1c -fcompound-names -pdu=SessionArchiveSection -S /home/schloegl/cvs/asn1c/skeletons fef.asn1
# asn1c -fcompound-names -pdu=SessionArchiveSection fef.asn1
# #asn1c -fcompound-names iso11073-10471.asn1
# #asn1c -fcompound-names iso11073-20601.asn1
# cd ..
# $(MAKE) -C t240 -f Makefile.am.sample
$(CC) -c $(CFLAGS) -I t240 $(INCPATH) -o "$@" "$<"
sopen_hl7aecg.o: t230/sopen_hl7aecg.c biosig-dev.h biosig.h XMLParser/tinyxml.h XMLParser/tinystr.h
$(CXX) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
sopen_scp_read.o: t210/sopen_scp_read.c biosig-dev.h biosig.h biosig.h t210/structures.h
$(CXX) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
scp-decode.o: t210/scp-decode.cpp biosig-dev.h biosig.h t210/structures.h t210/codes.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
getlogin_r.o: win32/getlogin_r.c
$(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
#strtod.o: gnulib/strtod.c
# $(CC) -c $(CFLAGS) $(INCPATH) -o strtod.o gnulib/strtod.c
win32/sandbox.obj: test0/sandbox.c biosig.h
$(MinGWCXX) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
win32/sopen_scp_read.obj: t210/sopen_scp_read.c biosig-dev.h biosig.h t210/structures.h
$(MinGWCXX) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
win32/sopen_alpha_read.obj: t210/sopen_alpha_read.c biosig-dev.h
$(MinGWCC) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
win32/scp-decode.obj: t210/scp-decode.cpp biosig-dev.h biosig.h t210/structures.h t210/codes.h
$(MinGWCXX) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
#win32/sopen_fef_read.obj: t240/sopen_fef_read.c biosig-dev.h biosig.h
# $(MinGWCC) -c $(MinGWCFLAGS) -I t240 $(INCPATH) -o win32/sopen_fef_read.obj t240/sopen_fef_read.c
win32/sopen_hl7aecg.obj: t230/sopen_hl7aecg.c biosig-dev.h biosig.h XMLParser/tinyxml.h XMLParser/tinystr.h
$(MinGWCXX) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
win32/getlogin_r.obj: win32/getlogin_r.c
$(MinGWCC) -c $(MinGWCFLAGS) $(INCPATH) -o "$@" "$<"
win32/sigviewer.exe: win32/libbiosig.a win32/libbiosig.dll
-$(DELETE) $(PathToSigViewerWIN32)/extern/include/*.h
-$(COPY) biosig.h $(PathToSigViewerWIN32)/extern/include
-$(DELETE) $(PathToSigViewerWIN32)/extern/lib/lib*
-$(COPY) win32/libbiosig.a $(PathToSigViewerWIN32)/extern/lib
-(cd $(PathToSigViewerWIN32)/src; $(CROSS)qmake; make)
-$(COPY) $(PathToSigViewerWIN32)/bin/sigviewer.exe win32/
#############################################################
# other language bindings (on Linux)
#############################################################
biosig4python : python/_biosig.so python/biosig.py
python/biosig.py python/swig_wrap.cxx: python/swig.i
$(SWIG) -c++ -python -I/usr/include -I/usr/share/pyshared/numpy/core/include/numpy -o python/swig_wrap.cxx python/swig.i
python/_biosig.so : python/swig_wrap.cxx libbiosig.$(LIBEXT)
$(CXX) -c $(CXXFLAGS) python/swig_wrap.cxx -o python/swig_wrap.o -I/usr/include/python$(PYTHONVER) -I/usr/share/pyshared/numpy/core/include/numpy
$(CXX) -shared python/swig_wrap.o $(LFLAGS) $(LIBS) -o python/_biosig.so
java: libbiosig.$(LIBEXT) java/biosig.i
$(MAKE) -C java
perl: libbiosig.$(LIBEXT) perl/biosig.i
$(MAKE) -C perl
php: libbiosig.$(LIBEXT) php/biosig.i
$(MAKE) -C php
python: libbiosig.$(LIBEXT) python/swig.i
$(MAKE) -C python
ruby: libbiosig.$(LIBEXT) ruby/biosig.i
$(MAKE) -C ruby
tcl: libbiosig.$(LIBEXT) tcl/biosig.i
$(MAKE) -C tcl
#############################################################
# WIN32 - BUILD
#############################################################
win32/libbiosig.lib: win32/libbiosig.a
$(COPY) win32/libbiosig.a win32/libbiosig.lib
win32/libbiosig.a: $(MinGWOBJECTS) win32/libcnsfef.a biosig.h biosig-dev.h
-$(DELETE) win32/libbiosig.a
$(CROSS)$(AR) win32/libbiosig.a $(MinGWOBJECTS) t240/*.obj
win32/libcnsfef.a:
make CROSS=$(CROSS) -C t240 ../win32/libcnsfef.a
win32/libbiosig.dll: $(MinGWOBJECTS) biosig.h biosig-dev.h
$(MinGWLINK) -shared -fPIC $(MinGWOBJECTS) $(MinGWLIBS) -o win32/libbiosig.dll -Wl,--output-def,win32/libbiosig.def,--out-implib,win32/libbiosig.dll.a
-$(COPY) win32/libbiosig.dll $(PathToSigViewerWIN32)/extern/lib/
win32/save2gdf.exe: save2gdf.c win32/libbiosig.a
$(MinGWLINK) $(MinGWCFLAGS) save2gdf.c $(MinGWLIBS) -o win32/save2gdf.exe
win32/pdp2gdf.exe: pdp2gdf.c win32/libbiosig.a
$(MinGWLINK) $(MinGWCFLAGS) pdp2gdf.c $(MinGWLIBS) -o win32/pdp2gdf.exe
win32 exe: win32/save2gdf.exe win32/libbiosig.dll mma #win32/sigviewer.exe
#############################################################
# GNU/Linux - BUILD
#############################################################
t240/libcnsfef.a:
# $(MAKE) -C t240 regen #
$(MAKE) -C t240 libcnsfef.a # generate t240/*.o files
libbiosig.a: $(OBJECTS) biosig.h biosig-dev.h #t240/libcnsfef.a
-$(DELETE) libbiosig.a
$(AR) libbiosig.a $(OBJECTS) #t240/*.o
libbiosig.so: $(OBJECTS) t240/libcnsfef.a biosig.h biosig-dev.h
$(CXX) -shared -fPIC -Wl,-soname,libbiosig.so.${MAJOR_VERSION} $(LDLIBS) \
-o libbiosig.so.${MAJOR_VERSION}.${MINOR_VERSION}.${STEPPING} $(OBJECTS) t240/*.o
ln -sf libbiosig.so.${MAJOR_VERSION}.${MINOR_VERSION}.${STEPPING} libbiosig.so.${MAJOR_VERSION}
ln -sf libbiosig.so.${MAJOR_VERSION} libbiosig.so
save2gdf: save2gdf.o libbiosig.$(LIBEXT) Makefile
$(LINK) $(CXXFLAGS) save2gdf.o $(LFLAGS) $(LIBS) -o save2gdf
pdp2gdf: pdp2gdf.o libbiosig.$(LIBEXT)
$(LINK) $(CXXFLAGS) pdp2gdf.o $(LFLAGS) $(LIBS) -o pdp2gdf
physicalunits: physicalunits.o libbiosig.$(LIBEXT)
$(LINK) $(CXXFLAGS) physicalunits.o $(LFLAGS) $(LIBS) -o physicalunits
bscs: biosig_client biosig_server sandbox.o biosig.o
biosig_client: biosig_client.c libbiosig.$(LIBEXT) biosig-network.o Makefile
$(LINK) $(CXXFLAGS) biosig_client.c biosig-network.o $(LFLAGS) $(LIBS) -o biosig_client
biosig_server: biosig_server.c libbiosig.$(LIBEXT) biosig-network.o Makefile
$(LINK) $(CXXFLAGS) biosig_server.c biosig-network.o $(LFLAGS) $(LIBS) -o biosig_server
#############################################################
# MathLink interface to Mathematica
#############################################################
mma: libbiosig.a
$(MAKE) -C mma -f Makefile.win32
mex mex4m mex4o mexw32 oct:
$(MAKE) -C mex $@
#############################################################
# MEX-files for Octave and Matlab
#############################################################
mex:
$(MAKE) -C mex mex -k
mex mex4m mex4o mexw32 oct:
$(MAKE) -C mex $@
%.mex %.mex.$(MEX_EXT) %.mexw32:
$(MAKE) -C mex $@
#############################################################
# SigViewer
#############################################################
sigviewer: $(PathToSigViewer)/bin/sigviewer
$(COPY) $(PathToSigViewer)/bin/release/sigviewer ~/bin/sigviewer-$(TODAY)
mv $(PathToSigViewer)/bin/release/sigviewer $(PathToSigViewer)/bin/sigviewer-$(TODAY)
ln -sf ~/bin/sigviewer-$(TODAY) ~/bin/sigviewer
$(PathToSigViewer)/bin/sigviewer: libbiosig.$(LIBEXT) biosig.h
$(COPY) -lf biosig.h $(PathToSigViewer)/extern/include/
$(COPY) -lf libbiosig.$(LIBEXT) $(PathToSigViewer)/extern/lib/
# touch $(PathToSigViewer)/tmp/basic_header.o
(cd $(PathToSigViewer)/src; qmake;make;)
docs: docs/save2gdf.txt docs/mexSLOAD.txt
asciidoc -d manpage docs/save2gdf.txt
asciidoc -d manpage docs/mexSLOAD.txt
# for backward compatibility
save2scp: save2gdf
save2aecg: save2gdf
#############################################################
# INSTALL and DE-INSTALL
#############################################################
clean:
-$(DELETE) *~
-$(DELETE) *.a
-$(DELETE) eventcodes.i
-$(DELETE) *.o
-$(DELETE) *.so
-$(DELETE) *.so.*
-$(DELETE) *.mex*
-$(DELETE) *.oct
-$(DELETE) python/biosig.py* _biosig.so
-$(DELETE) python/swig_wrap.*
-$(DELETE) win32/*.a
-$(DELETE) win32/*.lib
-$(DELETE) win32/*.o
-$(DELETE) win32/*.obj
-$(DELETE) win32/*.exe
-$(DELETE) t240/*.o
-$(DELETE) t240/libcnsfef.a
-$(DELETE) t240/libbiosig.*
-$(DELETE) t240/*.obj
-$(DELETE) pdp2gdf
-$(MAKE) -C java clean
-$(MAKE) -C matlab clean
-$(MAKE) -C mma clean
-$(MAKE) -C php clean
-$(MAKE) -C perl clean
-$(MAKE) -C ruby clean
-$(MAKE) -C tcl clean
install_sigviewer: sigviewer
install $(PathToSigViewer)/bin/sigviewer $(BIN)
install ../biosig/doc/eventcodes.txt $(BIN)
install_octave: mexSLOAD.mex
mkdir -p $(DESTDIR)/usr/local/share/octave/site-m/
install mex/mexSLOAD.mex $(DESTDIR)/usr/local/share/octave/site-m/
install mex/mexSOPEN.mex $(DESTDIR)/usr/local/share/octave/site-m/
install: save2gdf libbiosig.a libbiosig.so doc/save2gdf.1
install -d $(BIN)
install save2gdf $(BIN)
install save2aecg $(BIN)
install save2scp $(BIN)
#install rec2bin $(BIN)
#install bin2rec $(BIN)
install -d $(LIB) $(DESTDIR)/usr/include
install biosig.h $(DESTDIR)/usr/include
install libbiosig.so.${MAJOR_VERSION}.${MINOR_VERSION}.${STEPPING} $(LIB)
ln -sf libbiosig.so.${MAJOR_VERSION}.${MINOR_VERSION}.${STEPPING} $(LIB)/libbiosig.so.${MAJOR_VERSION}
ln -sf libbiosig.so.${MAJOR_VERSION} $(LIB)/libbiosig.so
install libbiosig.a $(LIB)
mkdir -p $(DESTDIR)/usr/share/man/man1
install doc/*.1 $(DESTDIR)/usr/share/man/man1
#install libbiosig.man $(DESTDIR)/usr/share/
#make install_sigviewer
#make install_octave
remove:
rm $(BIN)/save2gdf
rm $(BIN)/save2scp
rm $(BIN)/save2aecg
#rm $(BIN)/rec2bin
#rm $(BIN)/bin2rec
rm $(BIN)/sigviewer
rm $(BIN)/eventcodes.txt
rm $(DESTDIR)/usr/include/biosig.h
rm $(LIB)/libbiosig.*
rm $(DESTDIR)/usr/share/man/man1/save2gdf.1
rm $(DESTDIR)/usr/share/man/man1/mexSLOAD.1
rm $(DESTDIR)/usr/share/man/man1/sigviewer.1
#rm $(DESTDIR)/usr/share/man/man1/rec2bin.1
#rm $(DESTDIR)/usr/share/man/man1/bin2rec.1
#############################################################
# Testing
#############################################################
# ./save2gdf -V8 ~/data/test/tms32/small_test.float32.log
./save2gdf -f=TMSi t0.scp t2.log
cat t2.log
$(TEMP_DIR)t1.scp:
# scp example data sets
wget -q -P$(TEMP_DIR) http://www.openecg.net/ECGsamples.zip
wget -q -P$(TEMP_DIR) http://www.openecg.net/ECGsamplesc.zip
unzip -u $(TEMP_DIR)ECGsamples.zip "scp*.zip" -d $(TEMP_DIR)
unzip -u $(TEMP_DIR)ECGsamplesc.zip "scp*.zip" -d $(TEMP_DIR)
mkdir -p $(TEMP_DIR)scp/high
mkdir -p $(TEMP_DIR)scp/highc
mkdir -p $(TEMP_DIR)scp/redred
mkdir -p $(TEMP_DIR)scp/redredc
unzip -u $(TEMP_DIR)scp_high.zip -d $(TEMP_DIR)scp/high
unzip -u $(TEMP_DIR)scp_highc.zip -d $(TEMP_DIR)scp/highc
unzip -u $(TEMP_DIR)scp_redred.zip -d $(TEMP_DIR)scp/redred
unzip -u $(TEMP_DIR)scp_redredc.zip -d $(TEMP_DIR)scp/redredc
rm -rf $(TEMP_DIR)ECGsamples*.zip
rm -rf $(TEMP_DIR)scp*.zip
$(COPY) $(TEMP_DIR)scp/redred/PFE103.scp $(TEMP_DIR)t1.scp
touch $(TEMP_DIR)t1.scp
$(TEMP_DIR)t1.hl7:
# HL7aECG example data set
wget -q -P$(TEMP_DIR) http://hl7.org/library/committees/rcrim/annecg/aECG%20Release%201%20Schema%20and%20Example%2Ezip
unzip -u "$(TEMP_DIR)aECG Release 1 Schema and Example.zip" -d $(TEMP_DIR)
$(COPY) "$(TEMP_DIR)2003-12 Schema/example/Example aECG.xml" $(TEMP_DIR)t1.hl7
rm -rf "$(TEMP_DIR)aECG Release 1 Schema and Example.zip"
rm -rf "$(TEMP_DIR)2003-12 Schema"
touch $(TEMP_DIR)t1.hl7
$(TEMP_DIR)t1.edf:
# EDF+ example data set
wget -q -P$(TEMP_DIR) http://www.edfplus.info/downloads/files/osas.zip
unzip -u "$(TEMP_DIR)osas.zip" -d $(TEMP_DIR)
cp "$(TEMP_DIR)Osas2002plusQRS.edf" $(TEMP_DIR)t1.edf
touch $(TEMP_DIR)t1.edf
asc: save2gdf
./save2gdf -f=ASCII t0.xxx t1.asc
bin: save2gdf
./save2gdf -f=BIN t0.xxx t1.bin
testbin: save2gdf $(TEMP_DIR)t1.edf
./save2gdf -f=BIN $(TEMP_DIR)t1.edf $(TEMP_DIR)t1.hdr
./save2gdf -f=BIN $(TEMP_DIR)t1.hdr $(TEMP_DIR)t2.hdr
./save2gdf -f=GDF $(TEMP_DIR)t2.hdr $(TEMP_DIR)t2.gdf
testscp: save2gdf $(TEMP_DIR)t1.scp
# test converting SCP data
./save2gdf -f=HL7 $(TEMP_DIR)/t1.scp $(TEMP_DIR)/t1.scp.hl7
./save2gdf -f=GDF $(TEMP_DIR)/t1.scp.hl7 $(TEMP_DIR)/t1.scp.hl7.gdf
./save2gdf -f=SCP $(TEMP_DIR)/t1.scp.hl7.gdf $(TEMP_DIR)/t1.scp.hl7.gdf.scp
./save2gdf -f=GDF $(TEMP_DIR)/t1.scp.hl7.gdf.scp $(TEMP_DIR)t1.scp.hl7.gdf.scp.gdf
./save2gdf -f=HL7 $(TEMP_DIR)t1.scp.hl7.gdf.scp.gdf $(TEMP_DIR)t1.scp.hl7.gdf.scp.gdf.hl7
./save2gdf -f=SCP $(TEMP_DIR)t1.scp.hl7.gdf.scp.gdf.hl7 $(TEMP_DIR)t1.scp.hl7.gdf.scp.gdf.hl7.scp
./save2gdf -f=GDF $(TEMP_DIR)t1.scp $(TEMP_DIR)t1.scp.gdf
./save2gdf -f=HL7 $(TEMP_DIR)t1.scp.gdf $(TEMP_DIR)t1.scp.gdf.hl7
./save2gdf -f=SCP $(TEMP_DIR)t1.scp.gdf.hl7 $(TEMP_DIR)t1.scp.gdf.hl7.scp
./save2gdf -f=HL7 $(TEMP_DIR)t1.scp.gdf.hl7.scp $(TEMP_DIR)t1.scp.gdf.hl7.scp.hl7
./save2gdf -f=GDF $(TEMP_DIR)t1.scp.gdf.hl7.scp.hl7 $(TEMP_DIR)t1.scp.gdf.hl7.scp.hl7.gdf
./save2gdf -f=SCP $(TEMP_DIR)t1.scp.gdf.hl7.scp.hl7.gdf $(TEMP_DIR)t1.scp.gdf.hl7.scp.hl7.gdf.scp
testhl7: save2gdf $(TEMP_DIR)t1.hl7
# test converting HL7aECG data
./save2gdf -f=GDF $(TEMP_DIR)t1.hl7 $(TEMP_DIR)t1.hl7.gdf
./save2gdf -f=SCP $(TEMP_DIR)t1.hl7.gdf $(TEMP_DIR)t1.hl7.gdf.scp
./save2gdf -f=HL7 $(TEMP_DIR)t1.hl7.gdf.scp $(TEMP_DIR)t1.hl7.gdf.scp.hl7
./save2gdf -f=SCP $(TEMP_DIR)t1.hl7.gdf.scp.hl7 $(TEMP_DIR)t1.hl7.gdf.scp.hl7.scp
./save2gdf -f=GDF $(TEMP_DIR)t1.hl7.gdf.scp.hl7.scp $(TEMP_DIR)t1.hl7.gdf.scp.hl7.scp.gdf
./save2gdf -f=HL7 $(TEMP_DIR)t1.hl7.gdf.scp.hl7.scp.gdf $(TEMP_DIR)t1.hl7.gdf.scp.hl7.scp.gdf.hl7
./save2gdf -f=SCP $(TEMP_DIR)t1.hl7 $(TEMP_DIR)t1.hl7.scp
./save2gdf -f=GDF $(TEMP_DIR)t1.hl7.scp $(TEMP_DIR)t1.hl7.scp.gdf
./save2gdf -f=HL7 $(TEMP_DIR)t1.hl7.scp.gdf $(TEMP_DIR)t1.hl7.scp.gdf.hl7
./save2gdf -f=GDF $(TEMP_DIR)t1.hl7.scp.gdf.hl7 $(TEMP_DIR)t1.hl7.scp.gdf.hl7.gdf
./save2gdf -f=SCP $(TEMP_DIR)t1.hl7.scp.gdf.hl7.gdf $(TEMP_DIR)t1.hl7.scp.gdf.hl7.gdf.scp
./save2gdf -f=HL7 $(TEMP_DIR)t1.hl7.scp.gdf.hl7.gdf.scp $(TEMP_DIR)t1.hl7.scp.gdf.hl7.gdf.scp.hl7
test: $(TEMP_DIR)t1.scp save2scp save2aecg save2gdf
# biosig4python
# includes test for on-the-fly compression and decompression
./save2gdf -z $(TEMP_DIR)t1.scp $(TEMP_DIR)t1.scp.gdf
./save2scp -z $(TEMP_DIR)t1.scp $(TEMP_DIR)t1.scp.scp
./save2aecg -z $(TEMP_DIR)t1.scp $(TEMP_DIR)t1.scp.hl7
./save2gdf $(TEMP_DIR)t1.scp.gdf.gz $(TEMP_DIR)t1.scp.gdf.gdf
./save2gdf $(TEMP_DIR)t1.scp.scp.gz $(TEMP_DIR)t1.scp.scp.gdf
./save2gdf $(TEMP_DIR)t1.scp.hl7.gz $(TEMP_DIR)t1.scp.hl7.gdf
./save2scp $(TEMP_DIR)t1.scp.gdf.gz $(TEMP_DIR)t1.scp.gdf.scp
./save2scp $(TEMP_DIR)t1.scp.scp.gz $(TEMP_DIR)t1.scp.scp.scp
./save2scp $(TEMP_DIR)t1.scp.hl7.gz $(TEMP_DIR)t1.scp.hl7.scp
./save2aecg $(TEMP_DIR)t1.scp.gdf.gz $(TEMP_DIR)t1.scp.gdf.hl7
./save2aecg $(TEMP_DIR)t1.scp.scp.gz $(TEMP_DIR)t1.scp.scp.hl7
./save2aecg $(TEMP_DIR)t1.scp.hl7.gz $(TEMP_DIR)t1.scp.hl7.hl7
# python test0/test.py
zip: $(TEMP_DIR)t1.scp save2gdf
# test for on-the-fly compression and decompression
# on-the-fly compression of output file
./save2gdf -z -f=GDF $(TEMP_DIR)t1.scp t1.gdf
./save2gdf -z -f=GDF1 $(TEMP_DIR)t1.scp t1.gd1
./save2gdf -z -f=EDF $(TEMP_DIR)t1.scp t1.edf
./save2gdf -z -f=BDF $(TEMP_DIR)t1.scp t1.bdf
./save2gdf -z -f=SCP $(TEMP_DIR)t1.scp t1.scp
./save2gdf -z -f=CFWB $(TEMP_DIR)t1.scp t1.cfw
./save2gdf -z -f=MFER $(TEMP_DIR)t1.scp t1.mwf
./save2gdf -z -f=HL7 $(TEMP_DIR)t1.scp t1.hl7
gzip -c $(TEMP_DIR)t1.scp >$(TEMP_DIR)t1.scp.gz
# on-the-fly decompression of input file
./save2gdf -f=GDF $(TEMP_DIR)t1.scp.gz t1.gdf
./save2gdf -f=EDF $(TEMP_DIR)t1.scp.gz t1.edf
./save2gdf -f=BDF $(TEMP_DIR)t1.scp.gz t1.bdf
./save2gdf -f=SCP $(TEMP_DIR)t1.scp.gz t1.scp
./save2gdf -f=HL7 $(TEMP_DIR)t1.scp.gz t1.hl7
./save2gdf -f=MFER $(TEMP_DIR)t1.scp.gz t1.mwf
./save2gdf -f=CFWB $(TEMP_DIR)t1.scp.gz t1.cfw
test6: $(TEMP_DIR)t1.scp save2gdf
$(COPY) $(TEMP_DIR)t1.scp t0.xxx
#test7: $(TEMP_DIR)t1.edf save2gdf
#$(COPY) $(TEMP_DIR)t1.edf t0.xxx
./save2gdf -z -f=GDF1 t0.xxx t1.gd1
./save2gdf -z -f=GDF t0.xxx t1.gdf
./save2gdf -z -f=EDF t0.xxx t1.edf
./save2gdf -z -f=BDF t0.xxx t1.bdf
./save2gdf -z -f=SCP t0.xxx t1.scp
./save2gdf -f=HL7 t0.xxx t1.hl7 # -z not supported for HL7
gzip t1.hl7
./save2gdf -z -f=CFWB t0.xxx t1.cfw
./save2gdf -z -f=MFER t0.xxx t1.mwf
./save2gdf -z -f=BVA t0.xxx t1.bva
./save2gdf -f=GDF1 t1.gd1.gz t2.gd1.gd1
./save2gdf -f=GDF t1.gd1.gz t2.gd1.gdf
./save2gdf -f=EDF t1.gd1.gz t2.gd1.edf
./save2gdf -f=BDF t1.gd1.gz t2.gd1.bdf
./save2gdf -f=SCP t1.gd1.gz t2.gd1.scp
./save2gdf -f=HL7 t1.gd1.gz t2.gd1.hl7
./save2gdf -f=CFWB t1.gd1.gz t2.gd1.cfw
./save2gdf -f=GDF1 t1.gdf.gz t2.gdf.gd1
./save2gdf -f=GDF t1.gdf.gz t2.gdf.gdf
./save2gdf -f=EDF t1.gdf.gz t2.gdf.edf
./save2gdf -f=BDF t1.gdf.gz t2.gdf.bdf
./save2gdf -f=SCP t1.gdf.gz t2.gdf.scp
./save2gdf -f=HL7 t1.gdf.gz t2.gdf.hl7
./save2gdf -f=CFWB t1.gdf.gz t2.gdf.cfw
./save2gdf -f=GDF1 t1.edf.gz t2.edf.gd1
./save2gdf -f=GDF t1.edf.gz t2.edf.gdf
./save2gdf -f=EDF t1.edf.gz t2.edf.edf
./save2gdf -f=BDF t1.edf.gz t2.edf.bdf
./save2gdf -f=SCP t1.edf.gz t2.edf.scp
./save2gdf -f=HL7 t1.edf.gz t2.edf.hl7
./save2gdf -f=CFWB t1.edf.gz t2.edf.cfw
./save2gdf -f=GDF1 t1.bdf.gz t2.bdf.gd1
./save2gdf -f=GDF t1.bdf.gz t2.bdf.gdf
./save2gdf -f=EDF t1.bdf.gz t2.bdf.edf
./save2gdf -f=BDF t1.bdf.gz t2.bdf.bdf
./save2gdf -f=SCP t1.bdf.gz t2.bdf.scp
./save2gdf -f=HL7 t1.bdf.gz t2.bdf.hl7
./save2gdf -f=CFWB t1.bdf.gz t2.bdf.cfw
./save2gdf -f=GDF1 t1.scp.gz t2.scp.gd1
./save2gdf -f=GDF t1.scp.gz t2.scp.gdf
./save2gdf -f=EDF t1.scp.gz t2.scp.edf
./save2gdf -f=BDF t1.scp.gz t2.scp.bdf
# ./save2gdf -f=SCP t1.scp.gz t2.scp.scp
./save2gdf -f=HL7 t1.scp.gz t2.scp.hl7
./save2gdf -f=CFWB t1.scp.gz t2.scp.cfw
./save2gdf -f=GDF1 t1.hl7.gz t2.hl7.gd1
./save2gdf -f=GDF t1.hl7.gz t2.hl7.gdf
./save2gdf -f=EDF t1.hl7.gz t2.hl7.edf
./save2gdf -f=BDF t1.hl7.gz t2.hl7.bdf
./save2gdf -f=SCP t1.hl7.gz t2.hl7.scp
./save2gdf -f=HL7 t1.hl7.gz t2.hl7.hl7
./save2gdf -f=CFWB t1.hl7.gz t2.hl7.cfw
./save2gdf -f=GDF1 t1.cfw.gz t2.cfw.gd1
./save2gdf -f=GDF t1.cfw.gz t2.cfw.gdf
./save2gdf -f=EDF t1.cfw.gz t2.cfw.edf
./save2gdf -f=BDF t1.cfw.gz t2.cfw.bdf
./save2gdf -f=SCP t1.cfw.gz t2.cfw.scp
./save2gdf -f=HL7 t1.cfw.gz t2.cfw.hl7
./save2gdf -f=GDF1 t1.mwf.gz t2.mwf.gd1
./save2gdf -f=GDF t1.mwf.gz t2.mwf.gdf
./save2gdf -f=EDF t1.mwf.gz t2.mwf.edf
./save2gdf -f=BDF t1.mwf.gz t2.mwf.bdf
./save2gdf -f=SCP t1.mwf.gz t2.mwf.scp
./save2gdf -f=HL7 t1.mwf.gz t2.mwf.hl7
testpybdf : $(TEMP_DIR)BDFtestfiles.zip
unzip -u $(TEMP_DIR)BDFtestfiles.zip -d $(TEMP_DIR) && \
python python/demo.py $(TEMP_DIR)*-256.bdf
python python/example.py $(TEMP_DIR)*-256.bdf 256 && \
python python/example.py $(TEMP_DIR)*-2048.bdf 2048
$(TEMP_DIR)BDFtestfiles.zip :
wget -P$(TEMP_DIR) http://www.biosemi.com/download/BDFtestfiles.zip
|
