File: test_alignment1.mfa

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>Cryptosporidium_hominis/868-954
AAGAACGAAAGUUAGGGGAUCGAAGACGAUCAGAUAC.CGUCCGUAGUCUUAACCAUAAACUAUGC.CAACU
.AGAGAUUGGAGGU.UGU.U....................
>Yarrowia_lipolytica/859-941
AAGAACGAAAGUUAGGGGAUCAAAGAUGAUCAGAUAC.CGUC.GUAGUCUUAACCGUAAACUAUGC.CGACU
.GAGAAUGGGUA.C.CG.......................
>Thalassiosira_pseudonana/975-1060
AAGAACGAAAGUUAGGGGAUCGAAGAUGAUUAGAUAC.CAUC.GUAGUCUUAACCAUAAACUAUGC.CGACU
.CGGGAUUGGCGGU.UGU.U....................
>Guillardia_theta/949-1034
AAGAACGAAAGUUAGGGGAUCGAAGACGAUCAGAUAC.CGUC.GUAGUCUUAACCAUAAACUAUGC.CGACU
.AGGGAUCAGUGGA.UGU.C....................
>Aedes_albopictus/1036-1121
AAGAACGAAAGUUAGAGGAUCGAAGGCGAUUAGAUAC.CGCC.CUAGUUCUAACCGUAAACUAUGC.CAAUU
.AGCAAUUGGGAGA.CGC.U....................
>Cyanidioschyzon_merolae/969-1054
AAGAACGAAAGUUAGGGGAUCGAAGACGAUUAGAUAC.CGUC.GUAGUCUUAACCAUAAACGAUGC.CGACU
.CGGGAUCGGUGGAG.CA.C....................
>Tetrahymena_thermophila/948-1030
AAGAACGAAAGUUAGGGGAUCAAAGACGAUCAGAUAC.CGUC.GUAGUCUUAACUAUAAACUAUAC.CGACU
.CGGGAUCGGCUGG..A.......................
>Dictyostelium_discoideum/969-1054
AAGAACGAAAGUUUGGGGAUCGAAGACGAUCAGAUAC.CGUC.GUAGUCCAAACUAUAAACUAUGU.CGACC
.AGGGAUCGGUUAA.AAU.U....................
>Plasmodium_falciparum/1039-1144
AAGAACGAAAGUUAAGGGAGUGAAGACGAUCAGAUAC.CGUC.GUAAUCUUAACCAUAAACUAUGC.CGACU
.AGGUGUUGGAUGA.AAG.UGUUAAAAAUAAAAGUCAUCU
>Schizosaccharomyces_pombe/985-1070
AAGAACGAAAGUUAGGGGAUCGAAGACGAUCAGAUAC.CGUC.GUAGUCUUAACCAUAAACUAUGC.CGACU
.AGGGAUCGGGCAA.UGU.U....................
>Caenorhabditis_elegans/942-1025
AAGAACGAAAGUCAGAGGUUCGAAGGCGAUUAGAUAC.CGCC.CUAGUUCUGACCGUAAACGAUGC.CAUCU
.CGCGAUUCGGAGG..G..U....................
>Leishmania_major/1217-1306
AAGAACCAAAGUGUGGAGAUCGAAGAUGAUUAGAGAC.CAUU.GUAGUCCACACUGCAAACGAUGA.CACCC
.AUGAAUUGGGGAU.CUU.AUG......GG..........
>Caenorhabditis_briggsae/935-1018
AAGAACGAAAGUCAGAGGUUCGAAGGCGAUUAGAUAC.CGCC.CUAGUUCUGACCGUAAACGAUGC.CAUCU
.CGCGAUUCGGAGG..G..U....................
>Saccharomyces_cerevisiae/970-1055
AAGAACGAAAGUUAGGGGAUCGAAGAUGAUCAGAUAC.CGUC.GUAGUCUUAACCAUAAACUAUGC.CGACU
.AGGGAUCGGGUGG.UGU.U....................
>Xenopus_laevis/989-1074
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUAC.CGUC.GUAGUUCCGACCAUAAACGAUGC.CGACU
.AGCGAUCCGGCGG.CGU.U....................
>Eremothecium_gossypii/966-1051
AAGAACGAAAGUUAGGGGAUCGAAGAUGAUCAGAUAC.CGUC.GUAGUCUUAACCAUAAACUAUGC.CGACU
.AGGGAUCGGGUGG.UGU.U....................
>Trypanosoma_brucei/1219-1310
AAGAACCAAAGUGUGGGGAUCAAAGAUGAUUAGAGAC.CAUU.GUAGUCCACACUGCAAACCAUGA.CACCC
.AUGAAUUGGGGAACAUCAUUG......GG..........
>Latimeria/979-1064 chalumnae
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUAC.CGUC.GUAGUUCCGACCAUAAACGAUGC.CAACU
.ACCGAUCCGGCGG.CGU.U....................
>Adineta_vaga/970-1055
AAGAACGAAAGUUUGAGGUUCGAAGACGAUUAGAUAC.CGUC.CUAGUUCAAACCAUAAACGUUGC.CAACU
.GUCUUUUAGAUGC.GGU.U....................
>Danio_rerio/1046-1131
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUAC.CGUC.GUAGUUCCGACCGUAAACGAUGC.CGACC
.CGCGAUCCGGCGG.CGU.U....................
>Anolis_carolinses/980-1065
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUAC.CGUC.GUAGUUCCGACCAUAAACGAUGC.CGACU
.AGCGAUCCGGCGG.CGU.U....................
>Gallus_gallus/985-1070
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUAC.CGUC.GUAGUUCCGACCAUAAACGAUGC.CGACU
.CGCGAUCCGGCGG.CGU.U....................
>Oryza_sativa/975-1060
AAGAACGAAAGUUGGGGGCUCGAAGACGAUCAGAUAC.CGUC.CUAGUCUCAACCAUAAACGAUGC.CGACC
.AGGGAUCGGCGGA.UGU.U....................
>Arabidopsis_thaliana/974-1059
AAGAACGAAAGUUGGGGGCUCGAAGACGAUCAGAUAC.CGUC.CUAGUCUCAACCAUAAACGAUGC.CGACC
.AGGGAUCAGCGGA.UGU.U....................
>Homo_sapiens/1027-1112
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUAC.CGUC.GUAGUUCCGACCAUAAACGAUGC.CGACC
.GGCGAUGCGGCGG.CGU.U....................
>Rattus_norvegicus/1031-1116
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUAC.CGUC.GUAGUUCCGACCAUAAACGAUGC.CGACU
.GGCGAUGCGGCGG.CGU.U....................
>Monodelphis_domestica/1068-1155
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUACUCGUC.GUAGUUCCGACCAUAAACGAUGCUCGACU
.AGCGAUCCGGCGG.CGU.U....................
>Mus_musculus/1029-1114
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUAC.CGUC.GUAGUUCCGACCAUAAACGAUGC.CGACU
.GGCGAUGCGGCGG.CGU.U....................
>Drosophila_melanogaster/1057-1142
AAGAACGAAAGUUAGAGGUUCGAAGGCGAUCAGAUAC.CGCC.CUAGUUCUAACCAUAAACGAUGC.CAGCU
.AGCAAUUGGGUGU.AGC.U....................
>Pan_troglodytes/1024-1109
AAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUAC.CGUG.GUAGUUCUGUCCAUAAACGAAGC.CGACU
.GGCAACGUGGCGG.UGU.U....................