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##fileformat=VCFv4.2
##FILTER=<ID=LowQual,Description="Low quality">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,Version=3.6-0-g89b7209,Date="Sat Mar 11 05:17:34 UTC 2017",Epoch=1489209454673,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[bams.list] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=hgr1.gatk.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false out=/home/ubuntu/work/100g.hgr1_all.vcf likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name= source=UNBOUND) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[] excludeAnnotation=[] group=[StandardAnnotation, StandardHCAnnotation] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamOutput=null bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false gcpHMM=10 pair_hmm_implementation=VECTOR_LOGLESS_CACHING pair_hmm_sub_implementation=ENABLE_ALL always_load_vector_logless_PairHMM_lib=false phredScaledGlobalReadMismappingRate=45 noFpga=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=true keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=false captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##contig=<ID=chr13,length=1023550>
##reference=file:///home/ubuntu/work/hgr1.gatk.fa
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00128 HG00139 HG00234 HG00253 HG00337 HG00353 HG00358 HG00362 HG00478 HG00536 HG00557 HG00717 HG00734 HG00740 HG00851 HG00978 HG00982 HG01066 HG01125 HG01176 HG01277 HG01348 HG01464 HG01589 HG01620 HG01626 HG01630 HG02035 HG02040 HG02046 HG02078 HG02090 HG02190 HG02219 HG02272 HG02277 HG02283 HG02286 HG02343 HG02479 HG02508 HG02780 HG02839 HG02888 HG02891 HG02946 HG03019 HG03195 HG03240 HG03268 HG03295 HG03432 HG03470 HG03548 HG03558 HG03604 HG03607 HG03616 HG03624 HG03720 HG03753 HG03790 HG03836 HG03856 HG03861 HG03867 HG03890 HG04162 NA06985 NA11881 NA12234 NA12283 NA12878 NA12891 NA12892 NA18533 NA18622 NA18632 NA18647 NA18981 NA19001 NA19006 NA19042 NA19091 NA19098 NA19144 NA19153 NA19159 NA19240 NA19320 NA19351 NA19475 NA19658 NA19670 NA19734 NA19795 NA19984 NA20357 NA20359 NA20503 NA20514 NA20827 NA20832 NA21109 NA21112 NA21113 NA21125
chr13 10114 . T G 1022.68 . AC=12;AF=0.072;AN=166;BaseQRankSum=-37.986;ClippingRankSum=-0.005;DP=12956;ExcessHet=4.8672;FS=87.888;InbreedingCoeff=-0.0850;MLEAC=10;MLEAF=0.060;MQ=42.99;MQRankSum=-0.767;QD=1.32;ReadPosRankSum=-3.093;SOR=9.497 GT:AD:DP:GQ:PL ./. 0/0:85,8:93:99:0,164,2785 ./. 0/0:65,2:67:99:0,187,2322 0/0:3,0:3:9:0,9,128 0/0:1,0:1:3:0,3,38 ./. 0/0:105,0:105:99:0,325,4012 0/0:1,0:1:3:0,3,44 ./. ./. 0/0:34,2:36:99:0,99,1348 0/0:25,5:30:18:0,18,955 0/0:23,2:25:62:0,62,856 ./. 0/0:9,0:9:27:0,27,339 0/0:1,0:1:6:0,6,78 0/0:15,2:17:34:0,34,552 0/0:13,2:15:19:0,19,542 0/0:440,46:486:99:0,895,14335 ./. ./. 0/0:992,64:1056:99:0,2469,36782 0/0:3,0:3:9:0,9,121 ./. ./. ./. 0/1:125,45:170:99:441,0,4243 0/1:96,26:122:99:130,0,3242 0/1:166,45:211:99:190,0,5679 0/0:573,82:655:99:0,968,20981 ./. 0/0:125,24:149:24:0,24,4678 0/0:25,0:25:80:0,80,995 ./. ./. 0/0:105,11:116:99:0,234,3657 ./. 0/0:94,1:95:99:0,275,3464 ./. ./. 0/0:14,0:14:42:0,42,560 0/0:22,4:26:29:0,29,746 0/0:49,6:55:65:0,65,1865 0/0:33,7:40:4:0,4,1224 0/0:55,6:61:99:0,137,2259 0/0:42,1:43:99:0,120,1530 0/1:16,3:19:1:1,0,593 0/1:29,11:40:40:40,0,1036 0/0:51,4:55:94:0,94,1776 0/1:30,7:37:3:3,0,1019 0/0:14,3:17:20:0,20,474 0/0:53,9:62:76:0,76,1957 0/1:32,6:38:40:40,0,1206 0/0:36,0:36:99:0,114,1442 0/0:34,1:35:80:0,80,1185 0/0:13,1:14:28:0,28,506 0/0:596,22:618:99:0,1642,22230 0/0:47,1:48:99:0,137,1844 0/1:44,15:59:99:229,0,1391 0/0:39,10:49:7:0,7,1380 0/1:6,1:7:10:10,0,166 0/1:7,4:11:27:27,0,211 0/0:42,6:48:58:0,58,1483 0/0:40,5:45:72:0,72,1631 0/0:8,1:9:17:0,17,320 0/1:47,9:56:22:22,0,1576 0/0:44,4:48:94:0,94,1777 0/0:66,9:75:78:0,78,2479 0/0:321,52:373:99:0,155,11882 0/1:9,2:11:15:15,0,293 0/0:24,0:24:74:0,74,885 0/0:1101,306:1407:99:0,138,36778 0/0:1428,270:1698:99:0,1617,49509 0/0:1288,231:1519:99:0,1531,45056 0/0:25,1:26:76:0,76,1013 0/0:84,7:91:99:0,212,3271 0/0:29,3:32:54:0,54,942 ./. 0/0:286,24:310:99:0,624,10646 ./. 0/0:42,3:45:95:0,95,1501 0/0:74,1:75:99:0,218,2761 0/0:36,0:36:99:0,106,1334 0/0:26,0:26:81:0,81,1025 0/0:28,1:29:80:0,80,1068 0/0:25,1:26:68:0,68,955 0/0:11,0:11:33:0,33,416 0/0:26,0:26:81:0,81,1082 0/0:29,0:29:93:0,93,1214 0/0:93,0:93:99:0,286,3423 0/0:56,5:61:99:0,142,1951 0/0:56,1:57:99:0,172,2231 0/0:46,1:47:99:0,145,1931 0/0:1,0:1:3:0,3,27 ./. ./. 0/0:98,1:99:99:0,276,3533 0/0:177,0:177:99:0,545,6645 0/0:79,6:85:99:0,193,2937 0/0:70,8:78:23:0,23,2535 0/0:29,1:30:55:0,55,1163 0/0:44,0:44:99:0,132,1735 ./. ./. ./. 0/0:625,65:690:99:0,1329,22353
chr13 10143 . T C 1267.92 . AC=3;AF=0.016;AN=190;BaseQRankSum=-5.920;ClippingRankSum=-0.001;DP=15038;ExcessHet=3.0798;FS=0.000;InbreedingCoeff=-0.0289;MLEAC=3;MLEAF=0.016;MQ=42.98;MQRankSum=0.413;QD=7.78;ReadPosRankSum=-3.416;SOR=2.504 GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,75 0/0:120,1:121:99:0,353,4425 0/0:1,0:1:3:0,3,33 0/0:91,0:91:99:0,269,3166 0/0:32,0:32:96:0,96,1225 0/0:26,0:26:78:0,78,1011 0/0:1,0:1:3:0,3,35 0/0:111,0:111:99:0,331,4191 0/0:21,0:21:63:0,63,837 0/0:23,0:23:69:0,69,907 0/0:14,0:14:42:0,42,528 0/0:41,0:41:99:0,123,1570 0/0:49,0:49:99:0,145,1679 0/0:69,0:69:99:0,206,2543 0/0:9,0:9:28:0,28,364 0/0:32,0:32:97:0,97,1230 0/0:20,0:20:63:0,63,790 0/0:42,0:42:99:0,126,1456 0/0:32,0:32:99:0,99,1256 0/0:579,0:579:99:0,1748,20293 ./. ./. 0/0:1189,1:1190:99:0,3577,44540 0/0:9,0:9:27:0,27,371 0/0:2,0:2:9:0,9,114 ./. ./. 0/0:206,1:207:99:0,599,7663 0/0:136,2:138:99:0,399,5234 0/0:271,0:271:99:0,810,10167 0/0:639,0:639:99:0,1919,23953 ./. 0/0:187,1:188:99:0,559,7492 0/0:42,0:42:99:0,126,1611 ./. ./. 0/0:138,0:138:99:0,418,5013 0/0:2,0:2:6:0,6,70 0/1:61,24:85:99:681,0,2066 ./. ./. 0/0:26,0:26:78:0,78,994 0/0:35,0:35:99:0,108,1237 0/0:64,0:64:99:0,192,2484 0/0:53,2:55:99:0,145,1986 0/0:78,0:78:99:0,233,2833 0/0:42,0:42:99:0,127,1571 0/0:37,0:37:99:0,111,1327 0/0:43,0:43:99:0,129,1573 0/0:59,1:60:99:0,167,1983 0/0:44,1:45:99:0,127,1646 0/0:33,0:33:99:0,100,1338 0/0:81,0:81:99:0,242,3007 0/0:67,1:68:99:0,194,2593 0/0:50,0:50:99:0,150,1937 0/0:52,0:52:99:0,155,1917 0/0:35,1:36:99:0,100,1231 0/0:736,0:736:99:0,2211,27306 0/0:53,0:53:99:0,159,2074 0/0:79,0:79:99:0,238,2899 0/0:53,0:53:99:0,161,2059 0/0:21,0:21:63:0,63,773 0/0:22,1:23:59:0,59,784 0/0:67,2:69:99:0,186,2486 0/0:52,0:52:99:0,155,1884 0/0:29,0:29:86:0,86,1080 0/0:77,1:78:99:0,222,2883 0/0:57,0:57:99:0,171,2167 0/0:103,0:103:99:0,310,4122 0/0:399,1:400:99:0,1193,15581 0/0:15,0:15:45:0,45,599 0/0:44,0:44:99:0,132,1696 0/0:1578,8:1586:99:0,4687,54994 0/0:1893,8:1901:99:0,5617,67077 0/0:1740,8:1748:99:0,5151,60108 0/0:49,0:49:99:0,150,1817 0/0:120,0:120:99:0,357,4478 0/0:44,0:44:99:0,131,1687 0/0:1,0:1:3:0,3,34 0/0:312,0:312:99:0,934,11438 0/0:1,0:1:3:0,3,42 0/0:69,0:69:99:0,206,2524 0/0:102,0:102:99:0,303,3542 0/0:50,0:50:99:0,150,1914 0/0:42,0:42:99:0,126,1522 0/1:29,7:36:99:174,0,989 0/0:44,0:44:99:0,135,1730 0/0:31,0:31:93:0,93,1182 0/0:40,0:40:99:0,119,1547 0/1:25,17:42:99:486,0,838 0/0:93,1:94:99:0,271,3493 0/0:79,0:79:99:0,237,2968 0/0:131,0:131:99:0,393,4976 0/0:95,1:96:99:0,278,3510 ./. 0/0:1,0:1:3:0,3,36 ./. 0/0:89,0:89:99:0,269,3284 0/0:187,0:187:99:0,560,7078 0/0:106,0:106:99:0,317,3951 0/0:97,0:97:99:0,292,3548 0/0:41,0:41:99:0,123,1629 0/0:42,0:42:99:0,126,1641 0/0:3,0:3:9:0,9,108 0/0:3,0:3:9:0,9,110 ./. 0/0:662,1:663:99:0,1984,24358
chr13 10154 . G C 57.22 . AC=8;AF=0.038;AN=208;BaseQRankSum=-1.546;ClippingRankSum=-0.001;DP=17522;ExcessHet=3.6169;FS=0.000;InbreedingCoeff=-0.0155;MLEAC=6;MLEAF=0.029;MQ=40.45;MQRankSum=0.126;QD=0.59;ReadPosRankSum=-1.089;SOR=0.852 GT:AD:DP:GQ:PL 0/1:4,1:5:24:24,0,136 0/1:43,6:49:34:34,0,1257 0/1:5,1:6:24:24,0,174 0/0:16,0:16:48:0,48,475 0/1:7,1:8:7:7,0,261 0/0:15,0:15:47:0,47,581 0/0:5,0:5:15:0,15,206 0/0:58,0:58:99:0,174,2087 0/0:18,0:18:54:0,54,672 0/0:21,0:21:60:0,60,748 0/1:14,2:16:26:26,0,559 0/0:42,3:45:28:0,28,1565 0/0:0,0:0:4:0,4,8 0/0:5,0:5:19:0,19,119 0/0:15,0:15:44:0,44,566 0/0:19,0:19:57:0,57,757 0/0:12,0:12:38:0,38,504 0/0:1,0:1:6:0,6,45 0/0:18,2:20:39:0,39,439 0/0:322,8:330:99:0,736,11284 ./. 0/0:6,0:6:18:0,18,240 0/0:645,20:665:99:0,1337,22994 0/1:12,1:13:7:7,0,422 0/1:4,1:5:28:28,0,142 0/0:6,0:6:21:0,21,237 0/0:2,0:2:6:0,6,85 0/0:121,1:122:99:0,360,4742 0/0:90,1:91:99:0,267,3629 0/0:166,0:166:99:0,508,6928 0/0:397,0:397:99:0,1184,14785 0/0:9,0:9:27:0,27,362 0/0:124,5:129:99:0,245,4786 0/0:41,3:44:13:0,13,1463 0/0:2,0:2:6:0,6,77 0/0:2,0:2:6:0,6,77 0/0:62,0:62:99:0,183,2142 0/0:5,0:5:15:0,15,199 0/0:21,0:21:67:0,67,784 0/0:1,0:1:3:0,3,46 0/0:3,0:3:9:0,9,131 0/0:32,1:33:53:0,53,1178 0/0:19,0:19:56:0,56,756 0/0:42,0:42:99:0,128,1619 0/0:41,0:41:99:0,128,1708 0/0:49,0:49:99:0,151,1913 0/0:45,1:46:99:0,103,1758 0/0:26,0:26:79:0,79,935 0/0:27,0:27:81:0,81,1083 0/0:36,0:36:99:0,112,1397 0/0:25,0:25:77:0,77,1003 0/0:43,0:43:99:0,130,1594 0/0:49,0:49:99:0,151,1920 0/0:59,0:59:99:0,178,2325 0/0:32,0:32:99:0,110,1340 0/0:30,0:30:86:0,86,981 0/0:30,1:31:84:0,84,1170 0/0:378,17:395:99:0,536,12826 0/0:42,1:43:98:0,98,1608 0/0:56,0:56:99:0,169,2035 0/0:38,0:38:99:0,117,1501 0/0:13,0:13:40:0,40,460 0/0:21,0:21:65:0,65,826 0/0:56,3:59:60:0,60,1941 0/0:37,0:37:99:0,109,1400 0/0:19,1:20:25:0,25,678 0/0:47,0:47:99:0,142,1801 0/1:28,4:32:31:31,0,839 0/0:63,0:63:99:0,189,2274 0/0:246,10:256:99:0,409,9917 0/0:21,0:21:64:0,64,805 0/0:45,0:45:99:0,139,1892 0/0:453,9:462:99:0,1109,16858 0/0:555,9:564:99:0,1400,21094 0/0:464,5:469:99:0,1290,17391 0/0:6,0:6:20:0,20,117 0/0:53,2:55:99:0,112,1757 0/0:11,0:11:32:0,32,350 0/0:1,0:1:3:0,3,43 0/0:193,1:194:99:0,578,7514 0/0:2,0:2:6:0,6,87 0/0:32,0:32:98:0,98,1196 0/0:54,0:54:99:0,149,1768 0/0:37,0:37:96:0,96,1092 0/0:39,0:39:99:0,117,1354 0/0:31,0:31:92:0,92,1165 0/0:50,0:50:99:0,158,2009 0/0:47,0:47:99:0,142,1835 0/0:38,0:38:99:0,117,1501 0/0:20,0:20:62:0,62,730 0/0:39,0:39:99:0,113,1331 0/0:42,0:42:99:0,113,1340 0/0:0,0:0:5:0,5,9 0/0:8,0:8:28:0,28,222 0/0:4,0:4:12:0,12,150 0/0:7,0:7:21:0,21,295 ./. 0/0:51,0:51:99:0,165,2044 0/0:125,3:128:99:0,265,4711 0/0:49,0:49:99:0,140,1691 0/0:40,0:40:99:0,115,1309 0/0:46,3:49:54:0,54,1783 0/0:50,3:53:64:0,64,1751 0/0:6,0:6:18:0,18,247 0/0:13,0:13:39:0,39,528 ./. 0/0:341,3:344:99:0,893,12330
chr13 10181 . C G 324.49 . AC=6;AF=0.028;AN=214;BaseQRankSum=0.747;ClippingRankSum=-0.001;DP=19892;ExcessHet=3.3228;FS=0.000;InbreedingCoeff=-0.0292;MLEAC=5;MLEAF=0.023;MQ=40.69;MQRankSum=-2.590;QD=0.68;ReadPosRankSum=-0.225;SOR=0.368 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,110,1464 0/0:115,0:115:99:0,343,4093 0/0:30,0:30:93:0,93,1224 0/0:40,3:43:8:0,8,1333 0/0:38,0:38:99:0,123,1496 0/0:59,1:60:99:0,147,2287 0/0:43,0:43:99:0,129,1670 0/0:103,0:103:99:0,308,3656 0/0:42,1:43:99:0,100,1498 0/0:63,4:67:41:0,41,2150 0/0:39,0:39:99:0,118,1407 0/0:78,2:80:99:0,183,2669 0/0:5,0:5:19:0,19,135 0/0:12,1:13:35:0,35,419 0/0:59,4:63:68:0,68,2050 0/0:80,1:81:99:0,209,3062 0/0:53,0:53:99:0,161,2050 0/0:8,0:8:30:0,30,293 0/1:23,2:25:7:7,0,593 0/0:512,0:512:99:0,1542,18252 0/0:19,0:19:57:0,57,783 0/0:34,0:34:99:0,104,1409 0/0:1070,0:1070:99:0,3209,39636 0/0:30,0:30:91:0,91,1054 0/0:38,0:38:99:0,115,1511 0/0:36,1:37:70:0,70,1391 0/0:21,0:21:64:0,64,852 0/0:183,12:195:99:0,124,6950 0/0:136,0:136:99:0,422,5781 0/1:216,21:237:89:89,0,8212 0/0:624,18:642:99:0,1252,22871 0/0:33,0:33:99:0,99,1298 0/0:196,0:196:99:0,587,7831 0/0:74,0:74:99:0,223,2523 0/0:28,0:28:85:0,85,1133 0/1:23,4:27:79:79,0,857 0/0:96,0:96:99:0,281,3200 0/0:33,0:33:99:0,103,1453 0/0:29,0:29:91:0,91,1033 0/0:15,0:15:48:0,48,608 0/0:50,0:50:99:0,157,2124 0/0:77,0:77:99:0,228,2750 0/0:28,1:29:82:0,82,1135 0/0:54,0:54:99:0,163,2126 0/0:64,0:64:99:0,199,2593 0/0:89,0:89:99:0,268,3451 0/0:79,0:79:99:0,238,2859 0/0:50,1:51:99:0,144,1897 0/0:49,0:49:99:0,146,1932 0/0:60,2:62:99:0,100,2244 0/0:42,0:42:99:0,128,1678 0/0:71,3:74:99:0,122,2134 0/0:82,0:82:99:0,249,3274 0/0:98,1:99:99:0,296,3902 0/0:54,2:56:99:0,121,1929 0/0:58,0:58:99:0,169,1969 0/0:52,1:53:99:0,118,1903 0/0:606,0:606:99:0,1816,21320 0/0:104,6:110:99:0,130,3315 0/0:79,0:79:99:0,237,3042 0/0:62,0:62:99:0,189,2572 0/0:26,0:26:78:0,78,927 0/0:31,0:31:94:0,94,1224 0/0:78,0:78:99:0,232,3023 0/0:56,0:56:99:0,166,2185 0/0:33,0:33:99:0,99,1269 0/0:70,2:72:99:0,135,2663 0/0:61,0:61:99:0,178,2214 0/0:99,4:103:99:0,211,3946 0/0:401,0:401:99:0,1210,16727 0/0:51,0:51:99:0,155,1956 0/0:76,3:79:99:0,160,2837 0/0:701,0:701:99:0,2106,26119 0/0:833,0:833:99:0,2522,31866 0/0:704,0:704:99:0,2116,26154 0/0:15,0:15:47:0,47,422 0/0:99,1:100:99:0,243,3415 0/0:25,3:28:11:0,11,835 0/0:19,0:19:57:0,57,776 0/0:295,0:295:99:0,879,11343 0/0:22,0:22:67:0,67,884 0/1:62,6:68:37:37,0,2013 0/0:100,2:102:99:0,251,3403 0/0:69,0:69:99:0,195,2283 0/0:84,0:84:99:0,250,2661 0/0:58,0:58:99:0,176,2069 0/0:117,0:117:99:0,355,4059 0/0:86,1:87:99:0,230,2963 0/0:82,0:82:99:0,248,2840 0/0:46,0:46:99:0,139,1732 0/0:73,1:74:99:0,199,2540 0/0:81,4:85:99:0,178,2669 0/0:9,0:9:31:0,31,396 0/0:22,0:22:70:0,70,712 0/0:25,0:25:76:0,76,989 0/1:23,3:26:40:40,0,897 0/0:18,0:18:54:0,54,757 0/0:85,0:85:99:0,253,3102 0/0:228,0:228:99:0,688,8523 0/1:79,14:93:99:181,0,2410 0/0:72,1:73:99:0,172,2309 0/0:91,1:92:99:0,267,3185 0/0:91,0:91:99:0,272,3309 0/0:33,0:33:99:0,100,1352 0/0:56,0:56:99:0,169,2255 0/0:6,0:6:18:0,18,244 0/0:514,36:550:99:0,359,17516
chr13 10186 . T C 576.32 . AC=8;AF=0.037;AN=214;BaseQRankSum=0.731;ClippingRankSum=-0.001;DP=21163;ExcessHet=3.5993;FS=0.000;InbreedingCoeff=-0.0390;MLEAC=7;MLEAF=0.033;MQ=40.62;MQRankSum=0.109;QD=1.20;ReadPosRankSum=0.899;SOR=0.625 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,124,1652 0/0:121,5:126:99:0,152,3381 0/0:38,3:41:11:0,11,1370 0/0:56,0:56:99:0,163,1878 0/1:41,6:47:94:94,0,1247 0/1:56,10:66:99:163,0,1638 0/0:57,0:57:99:0,171,2185 0/0:113,5:118:99:0,250,3399 0/0:56,0:56:99:0,165,1763 0/0:73,4:77:87:0,87,2389 0/0:51,0:51:99:0,152,1712 0/0:81,6:87:67:0,67,2432 0/0:6,0:6:23:0,23,178 0/0:13,0:13:46:0,46,459 0/0:75,0:75:99:0,224,2591 0/0:90,4:94:99:0,164,3135 0/0:60,0:60:99:0,179,2093 0/0:10,0:10:37:0,37,385 0/0:28,0:28:81:0,81,857 0/0:519,43:562:99:0,203,16051 0/0:28,1:29:52:0,52,1113 0/0:38,0:38:99:0,113,1460 0/0:1152,30:1182:99:0,2436,38630 0/0:34,0:34:99:0,102,1152 0/0:42,2:44:45:0,45,1549 0/0:46,0:46:99:0,138,1801 0/0:26,0:26:79:0,79,1082 0/0:211,0:211:99:0,635,8080 0/0:134,8:142:92:0,92,4909 0/0:258,1:259:99:0,770,9873 0/0:677,21:698:99:0,1360,23793 0/0:40,1:41:99:0,116,1587 0/0:201,3:204:99:0,493,7718 0/0:81,1:82:99:0,199,2405 0/0:42,0:42:99:0,127,1727 0/0:33,0:33:99:0,99,1319 0/0:104,0:104:99:0,298,3161 0/0:36,2:38:31:0,31,1362 0/0:30,0:30:90:0,90,918 0/0:21,0:21:63:0,63,806 0/0:68,0:68:99:0,206,2740 0/0:78,4:82:99:0,115,2562 0/0:29,0:29:85:0,85,1063 0/0:61,1:62:99:0,176,2171 0/0:69,1:70:99:0,204,2714 0/0:97,2:99:99:0,214,3487 0/1:77,12:89:99:137,0,2277 0/0:55,1:56:99:0,158,1933 0/0:48,2:50:97:0,97,1608 0/0:70,0:70:99:0,211,2604 0/0:46,1:47:99:0,130,1539 0/0:82,0:82:99:0,245,2582 0/0:90,1:91:99:0,261,3121 0/0:110,0:110:99:0,325,3717 0/0:64,0:64:99:0,220,2270 0/0:59,3:62:90:0,90,1785 0/1:55,6:61:9:9,0,1597 0/0:610,35:645:99:0,661,18522 0/0:121,5:126:99:0,221,3694 0/0:84,2:86:99:0,241,2920 0/0:70,1:71:99:0,177,2535 0/0:27,1:28:74:0,74,1018 0/1:28,4:32:68:68,0,871 0/0:82,4:86:99:0,114,2675 0/0:60,2:62:94:0,94,2072 0/0:36,2:38:42:0,42,1282 0/0:74,3:77:99:0,122,2323 0/1:59,8:67:92:92,0,1692 0/0:114,0:114:99:0,342,4337 0/0:427,6:433:99:0,1107,16416 0/0:61,0:61:99:0,183,2054 0/0:93,8:101:12:0,12,2793 0/0:707,35:742:99:0,821,23339 0/0:841,42:883:99:0,1032,28682 0/0:703,39:742:99:0,996,23616 0/0:16,0:16:49:0,49,464 0/0:109,5:114:99:0,190,3349 0/0:33,0:33:95:0,95,1134 0/0:23,2:25:27:0,27,889 0/0:287,22:309:49:0,49,9394 0/0:23,1:24:28:0,28,853 0/0:75,0:75:99:0,219,2516 0/0:113,1:114:99:0,291,3252 0/1:69,8:77:99:100,0,1606 0/0:95,0:95:99:0,282,2898 0/0:61,0:61:99:0,180,1857 0/0:140,2:142:99:0,351,4364 0/0:99,0:99:99:0,303,3245 0/0:99,0:99:99:0,298,3289 0/0:50,0:50:99:0,149,1716 0/0:91,0:91:99:0,262,2892 0/0:96,0:96:99:0,264,2781 0/0:17,0:17:53:0,53,705 0/0:26,0:26:81:0,81,894 0/0:32,1:33:53:0,53,1038 0/0:36,0:36:99:0,111,1461 0/0:29,0:29:87:0,87,1194 0/0:94,0:94:99:0,279,3298 0/0:252,3:255:99:0,675,8275 0/0:103,0:103:99:0,298,3203 0/0:87,0:87:99:0,251,2606 0/0:103,1:104:99:0,272,3492 0/0:101,1:102:99:0,258,3285 0/1:38,4:42:47:47,0,1315 0/0:65,1:66:99:0,172,2495 0/0:12,0:12:36:0,36,494 0/0:594,15:609:99:0,1230,20263
chr13 10211 . T C 5505.29 . AC=12;AF=0.056;AN=214;BaseQRankSum=-0.893;ClippingRankSum=-0.001;DP=23495;ExcessHet=4.4265;FS=2.597;InbreedingCoeff=-0.0571;MLEAC=11;MLEAF=0.051;MQ=40.70;MQRankSum=-0.587;QD=4.37;ReadPosRankSum=-2.333;SOR=1.354 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,214,2804 0/0:166,0:166:99:0,491,5655 0/0:72,0:72:99:0,217,2889 0/0:83,0:83:99:0,253,3056 0/0:76,0:76:99:0,229,2673 0/0:104,0:104:99:0,311,3519 0/0:118,0:118:99:0,355,4646 0/0:151,1:152:99:0,446,5206 0/0:82,0:82:99:0,246,2996 0/0:99,0:99:99:0,287,3412 0/0:71,0:71:99:0,212,2479 0/0:125,0:125:99:0,375,4125 0/0:11,0:11:39:0,39,385 0/0:25,0:25:79:0,79,825 0/0:112,0:112:99:0,334,3898 0/0:114,0:114:99:0,343,4198 0/0:85,0:85:99:0,254,3036 0/0:18,0:18:61:0,61,669 0/0:40,0:40:99:0,115,1238 0/0:755,0:755:99:0,2271,27243 0/0:61,0:61:99:0,185,2544 0/1:40,23:63:99:701,0,1292 0/0:1334,1:1335:99:0,3984,48160 0/0:47,0:47:99:0,142,1573 0/0:75,0:75:99:0,224,2817 0/0:73,0:73:99:0,223,2962 0/0:49,0:49:99:0,148,2047 0/0:245,1:246:99:0,725,9421 0/1:128,35:163:99:901,0,4375 0/0:296,2:298:99:0,875,11354 0/0:823,0:823:99:0,2472,31558 0/0:84,0:84:99:0,253,3335 0/1:200,28:228:99:362,0,6736 0/0:129,0:129:99:0,386,4085 0/0:79,0:79:99:0,238,3160 0/0:58,0:58:99:0,174,2291 0/0:119,1:120:99:0,346,3963 0/1:59,7:66:99:102,0,2161 0/0:40,0:40:99:0,121,1370 0/1:30,13:43:99:378,0,1003 0/1:115,9:124:1:1,0,4452 0/0:132,0:132:99:0,393,4287 0/0:46,0:46:99:0,137,1727 0/0:73,1:74:99:0,210,2639 0/1:59,25:84:99:642,0,1900 0/1:91,35:126:99:894,0,2784 0/0:119,0:119:99:0,357,3953 0/0:66,0:66:99:0,197,2351 0/0:60,1:61:99:0,171,2178 0/0:85,0:85:99:0,252,3052 0/0:54,2:56:99:0,146,1890 0/0:122,0:122:99:0,363,3625 0/0:114,3:117:99:0,279,3985 0/0:123,4:127:99:0,325,4251 0/0:90,1:91:99:0,298,3151 0/0:74,1:75:99:0,180,2599 0/0:80,1:81:99:0,229,2775 0/0:731,9:740:99:0,1933,25192 0/0:183,0:183:99:0,547,5948 0/0:96,0:96:99:0,286,3531 0/0:79,1:80:99:0,228,2913 0/0:37,0:37:99:0,112,1310 0/0:48,0:48:99:0,141,1622 0/0:96,1:97:99:0,278,3360 0/0:71,0:71:99:0,212,2726 0/1:43,8:51:99:144,0,1394 0/0:89,2:91:99:0,249,3080 0/0:78,0:78:99:0,237,2967 0/0:136,3:139:99:0,384,5268 0/0:490,2:492:99:0,1449,19008 0/0:87,0:87:99:0,259,2956 0/0:143,1:144:99:0,423,5156 0/0:853,3:856:99:0,2512,30580 0/0:977,12:989:99:0,2830,35640 0/0:864,3:867:99:0,2546,31162 0/0:29,0:29:89:0,89,1060 0/0:134,0:134:99:0,397,4724 0/0:41,0:41:99:0,123,1578 0/0:41,0:41:99:0,122,1610 0/0:378,0:378:99:0,1133,14401 0/0:45,0:45:99:0,139,1827 0/0:91,1:92:99:0,266,3267 0/0:135,0:135:99:0,399,4572 0/0:98,0:98:99:0,293,3562 0/0:146,0:146:99:0,432,4650 0/0:88,0:88:99:0,262,2961 0/0:240,0:240:99:0,719,7960 0/0:140,0:140:99:0,421,4854 0/1:121,18:139:99:130,0,3393 0/0:71,0:71:99:0,213,2567 0/0:121,0:121:99:0,364,4209 0/0:109,1:110:99:0,316,3553 0/1:36,7:43:99:136,0,1288 0/0:59,0:59:99:0,180,2038 0/0:70,0:70:99:0,210,2603 0/0:57,4:61:27:0,27,2049 0/0:53,0:53:99:0,162,2098 0/1:82,47:129:99:1283,0,2439 0/0:331,3:334:99:0,972,11365 0/0:135,1:136:99:0,397,4592 0/0:108,0:108:99:0,322,3527 0/0:146,0:146:99:0,437,4916 0/0:152,0:152:99:0,458,4987 0/0:70,0:70:99:0,214,2808 0/0:88,0:88:99:0,266,3453 0/0:18,0:18:57:0,57,740 0/0:761,0:761:99:0,2277,28269
chr13 10285 . G A 183.47 . AC=1;AF=4.673e-03;AN=214;BaseQRankSum=-1.734;ClippingRankSum=-0.001;DP=91578;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0047;MLEAC=1;MLEAF=4.673e-03;MQ=32.10;MQRankSum=-5.418;QD=0.71;ReadPosRankSum=-1.815;SOR=0.514 GT:AD:DP:GQ:PL 0/0:142,0:142:99:0,430,5517 0/0:273,0:273:99:0,825,10125 0/0:180,5:185:99:0,387,6665 0/0:153,1:154:99:0,448,5725 0/0:159,1:160:99:0,478,5990 0/0:183,1:184:99:0,520,6861 0/1:233,27:260:99:226,0,7856 0/0:271,0:271:99:0,822,10183 0/0:130,0:130:99:0,396,4994 0/0:165,0:165:99:0,498,6159 0/0:131,0:131:99:0,400,4943 0/0:249,0:249:99:0,747,8150 0/0:99,0:99:99:0,304,3303 0/0:181,0:181:99:0,550,6306 0/0:203,0:203:99:0,618,7697 0/0:153,1:154:99:0,422,5652 0/0:135,0:135:99:0,404,5130 0/0:145,2:147:99:0,430,4903 0/0:151,0:151:99:0,450,4974 0/0:1214,1:1215:99:0,3605,42709 0/0:164,0:164:99:0,497,6119 0/0:130,4:134:99:0,262,4793 0/0:1625,5:1630:99:0,4742,61588 0/0:130,0:130:99:0,390,3852 0/0:162,0:162:99:0,490,6177 0/0:117,0:117:99:0,357,4656 0/0:117,0:117:99:0,357,4556 0/0:337,0:337:99:0,1014,13483 0/0:209,2:211:99:0,560,8314 0/0:429,2:431:99:0,1273,17395 0/0:1050,1:1051:99:0,3165,41506 0/0:188,0:188:99:0,572,7370 0/0:276,2:278:99:0,786,11000 0/0:237,0:237:99:0,713,7887 0/0:220,0:220:99:0,669,8503 0/0:150,0:150:99:0,456,5583 0/0:210,0:210:99:0,628,7674 0/0:140,1:141:99:0,384,5343 0/0:63,0:63:99:0,196,2513 0/0:155,1:156:99:0,465,5678 0/0:268,0:268:99:0,817,10163 0/0:221,0:221:99:0,665,7590 0/0:80,0:80:99:0,243,3104 0/0:109,0:109:99:0,331,4377 0/0:109,0:109:99:0,334,4312 0/0:164,0:164:99:0,503,6278 0/0:249,0:249:99:0,748,7974 0/0:106,1:107:99:0,289,3995 0/0:100,0:100:99:0,301,3774 0/0:112,1:113:99:0,310,4393 0/0:113,8:121:81:0,81,4016 0/0:213,0:213:99:0,636,6839 0/0:206,1:207:99:0,601,8051 0/0:151,0:151:99:0,457,5791 0/0:189,0:189:99:0,614,7138 0/0:108,0:108:99:0,330,4094 0/0:121,0:121:99:0,365,4603 0/0:965,0:965:99:0,2906,35161 0/0:341,0:341:99:0,1024,11349 0/0:108,5:113:99:0,160,4019 0/0:119,0:119:99:0,357,4656 0/0:73,0:73:99:0,220,2772 0/0:74,0:74:99:0,222,2752 0/0:118,0:118:99:0,357,4726 0/0:109,0:109:99:0,327,4157 0/0:95,1:96:99:0,253,3534 0/0:124,0:124:99:0,374,4871 0/0:118,0:118:99:0,356,4348 0/0:226,1:227:99:0,644,8748 0/0:597,2:599:99:0,1727,24260 0/0:174,7:181:99:0,282,6216 0/0:240,2:242:99:0,664,9005 0/0:1462,12:1474:99:0,3969,56103 0/0:1685,10:1695:99:0,4696,65818 0/0:1401,7:1408:99:0,3976,54638 0/0:193,2:195:99:0,559,7165 0/0:161,0:161:99:0,492,6154 0/0:76,0:76:99:0,236,2900 0/0:96,0:96:99:0,288,3417 0/0:527,0:527:99:0,1590,20937 0/0:106,0:106:99:0,324,4112 0/0:148,0:148:99:0,449,5716 0/0:177,0:177:99:0,544,6829 0/0:149,0:149:99:0,455,5863 0/0:231,0:231:99:0,693,7340 0/0:153,0:153:99:0,459,5301 0/0:415,0:415:99:0,1243,13865 0/0:290,0:290:99:0,868,9851 0/0:230,0:230:99:0,692,7839 0/0:115,1:116:99:0,317,4481 0/0:229,0:229:99:0,693,8730 0/0:150,0:150:99:0,453,5792 0/0:265,3:268:99:0,733,9772 0/0:268,0:268:99:0,809,9836 0/0:157,5:162:99:0,298,5568 0/0:177,0:177:99:0,541,6919 0/0:139,4:143:99:0,280,5222 0/0:267,0:267:99:0,811,10372 0/0:554,7:561:99:0,1439,20673 0/0:230,1:231:99:0,659,8495 0/0:201,2:203:99:0,534,7441 0/0:260,13:273:99:0,363,8312 0/0:277,0:277:99:0,833,9209 0/0:167,0:167:99:0,502,6410 0/0:196,0:196:99:0,596,7701 0/0:58,0:58:99:0,176,2021 0/0:1175,1:1176:99:0,3524,46584
chr13 10743 . C G 60979.66 . AC=48;AF=0.226;AN=212;BaseQRankSum=-16.228;ClippingRankSum=-0.003;DP=25484;ExcessHet=33.2184;FS=0.000;InbreedingCoeff=-0.2949;MLEAC=48;MLEAF=0.226;MQ=43.39;MQRankSum=-3.558;QD=7.15;ReadPosRankSum=1.580;SOR=0.832 GT:AD:DP:GQ:PL 0/1:50,17:67:99:435,0,1779 0/0:260,6:266:99:0,644,10363 0/0:37,0:37:99:0,111,1469 0/1:186,24:210:99:296,0,6799 0/0:75,6:81:5:0,5,2756 0/1:68,17:85:99:326,0,2416 0/0:68,0:68:99:0,205,2767 0/0:287,10:297:99:0,546,11303 0/1:52,18:70:99:334,0,1895 0/1:59,21:80:99:518,0,2099 0/0:94,1:95:99:0,246,3832 0/1:116,30:146:99:541,0,3669 0/1:67,12:79:99:182,0,2326 0/0:136,0:136:99:0,408,5438 0/1:60,35:95:99:982,0,2219 0/1:70,19:89:99:434,0,2582 0/0:80,0:80:99:0,243,3216 0/1:67,33:100:99:946,0,2145 0/1:35,16:51:99:500,0,1254 0/0:800,52:852:99:0,699,28732 0/0:11,0:11:33:0,33,447 0/0:69,0:69:99:0,208,2763 0/0:1505,6:1511:99:0,4383,61044 0/0:44,0:44:99:0,135,1667 0/0:78,1:79:99:0,210,3057 0/1:29,21:50:99:658,0,1005 0/0:38,0:38:99:0,114,1590 0/1:74,104:178:99:3296,0,2586 0/0:127,7:134:99:0,157,5153 0/1:118,127:245:99:4080,0,4392 0/1:719,202:921:99:4607,0,26608 0/0:57,1:58:99:0,143,2319 0/0:118,6:124:99:0,112,4789 0/0:130,9:139:98:0,98,4226 0/1:47,11:58:99:227,0,1675 0/1:44,4:48:20:20,0,1648 0/0:198,0:198:99:0,596,7969 0/1:65,6:71:31:31,0,2452 0/0:145,0:145:99:0,435,5902 0/0:31,0:31:93:0,93,1208 0/0:63,0:63:99:0,190,2527 0/0:125,8:133:99:0,103,4342 0/1:25,40:65:99:1254,0,842 0/0:86,0:86:99:0,257,3481 0/0:65,0:65:99:0,197,2513 0/0:119,1:120:99:0,320,4584 0/0:171,7:178:99:0,324,5665 0/0:90,0:90:99:0,270,3640 0/0:51,4:55:12:0,12,1933 0/1:56,25:81:99:719,0,2011 0/0:89,0:89:99:0,268,3662 0/1:63,38:101:99:956,0,1945 0/0:138,0:138:99:0,415,5406 0/1:52,34:86:99:903,0,1791 0/1:129,67:196:99:1596,0,4297 0/0:135,10:145:99:0,185,5250 0/1:59,25:84:99:644,0,2022 0/1:898,135:1033:99:1756,0,31813 0/1:146,49:195:99:971,0,4600 0/0:62,0:62:99:0,192,2675 0/1:63,45:108:99:1279,0,2290 0/0:58,3:61:60:0,60,2199 0/0:49,5:54:28:0,28,1811 0/1:50,19:69:99:523,0,1803 0/0:63,2:65:99:0,112,2392 0/0:41,0:41:99:0,123,1592 0/1:63,49:112:99:1538,0,2140 0/1:127,12:139:22:22,0,4729 0/1:80,21:101:99:526,0,3061 0/0:483,4:487:99:0,1335,20967 0/0:97,0:97:99:0,291,3808 0/1:74,41:115:99:1108,0,2602 0/0:2863,34:2897:99:0,7595,115267 0/0:1773,19:1792:99:0,4686,71696 0/0:2837,41:2878:99:0,7174,113299 0/0:85,3:88:99:0,142,3229 0/1:193,40:233:99:772,0,7083 0/1:30,62:92:99:1936,0,843 0/1:20,10:30:99:320,0,724 0/0:480,32:512:99:0,335,18335 0/0:21,0:21:63:0,63,868 0/1:79,74:153:99:2019,0,2781 0/1:161,53:214:99:1173,0,5839 0/1:126,42:168:99:1086,0,4640 0/0:129,0:129:99:0,391,4745 0/1:58,25:83:99:716,0,1874 0/1:148,96:244:99:2366,0,4626 0/1:63,94:157:99:2598,0,1917 0/0:161,0:161:99:0,484,5526 0/0:114,0:114:99:0,343,4692 0/1:159,44:203:99:981,0,5565 0/1:97,59:156:99:1659,0,3508 0/0:157,0:157:99:0,471,6101 0/0:190,2:192:99:0,499,7493 0/0:55,0:55:99:0,166,2170 0/1:62,17:79:99:410,0,2271 0/0:15,0:15:45:0,45,600 0/0:243,0:243:99:0,731,9805 0/0:418,1:419:99:0,1255,16886 0/1:119,98:217:99:2916,0,4067 0/1:106,44:150:99:983,0,3744 0/0:136,5:141:99:0,249,4652 0/1:137,53:190:99:1199,0,4394 0/0:86,3:89:99:0,170,3328 0/0:91,3:94:99:0,171,3543 ./. 0/1:719,309:1028:99:7995,0,26301
chr13 10756 . A C 395.57 . AC=7;AF=0.033;AN=212;BaseQRankSum=-63.954;ClippingRankSum=-0.000;DP=25071;ExcessHet=3.4542;FS=55.905;InbreedingCoeff=-0.0341;MLEAC=7;MLEAF=0.033;MQ=43.41;MQRankSum=-12.840;QD=0.80;ReadPosRankSum=-11.074;SOR=5.316 GT:AD:DP:GQ:PL 0/0:43,3:46:99:0,102,1171 0/0:199,46:245:85:0,85,5847 0/0:23,0:23:66:0,66,589 0/0:186,22:208:99:0,334,6297 0/1:44,14:58:20:20,0,1078 0/1:46,27:73:99:171,0,926 0/0:47,1:48:99:0,131,1370 0/0:234,31:265:99:0,417,6973 0/1:38,15:53:37:37,0,938 0/0:56,16:72:33:0,33,1306 0/1:46,32:78:99:162,0,884 0/0:123,12:135:99:0,258,3332 0/0:63,1:64:99:0,163,2016 0/0:95,5:100:99:0,230,3205 0/1:63,19:82:21:21,0,1762 0/1:61,23:84:41:41,0,1425 0/1:44,23:67:69:69,0,810 0/0:82,1:83:99:0,239,2887 0/0:41,2:43:99:0,109,1561 0/0:743,61:804:99:0,1591,23000 0/0:6,0:6:18:0,18,212 0/0:49,9:58:58:0,58,1099 0/0:1395,155:1550:99:0,2668,44679 0/0:36,6:42:60:0,60,742 0/0:55,1:56:99:0,150,1338 0/0:40,1:41:99:0,112,1421 0/0:22,0:22:65:0,65,708 0/0:169,13:182:99:0,290,6554 0/0:112,15:127:99:0,159,4044 0/0:230,15:245:99:0,390,8843 0/0:867,62:929:99:0,2145,29489 0/0:43,0:43:99:0,127,1275 0/0:124,7:131:99:0,266,4750 0/0:102,19:121:99:0,122,2340 0/0:37,0:37:99:0,108,1156 0/0:31,0:31:92:0,92,1017 0/0:180,17:197:99:0,409,5757 0/0:43,6:49:85:0,85,1144 0/0:123,13:136:99:0,224,4281 0/0:23,0:23:68:0,68,702 0/0:39,0:39:99:0,114,1141 0/0:103,17:120:99:0,165,2698 0/0:63,5:68:99:0,142,2407 0/0:79,10:89:78:0,78,2623 0/0:62,7:69:99:0,120,2013 0/0:105,11:116:99:0,147,3062 0/0:151,14:165:99:0,321,3588 0/0:79,1:80:99:0,228,2922 0/0:50,4:54:99:0,107,1677 0/0:73,6:79:99:0,137,2548 0/0:77,9:86:99:0,114,2445 0/0:89,5:94:99:0,226,2673 0/0:122,11:133:99:0,249,3928 0/0:77,8:85:99:0,99,2845 0/0:164,15:179:99:0,372,4726 0/0:136,12:148:99:0,291,4400 0/0:70,4:74:99:0,108,2530 0/0:969,54:1023:99:0,2458,31861 0/0:160,14:174:99:0,368,4439 0/0:50,6:56:47:0,47,1644 0/0:98,10:108:99:0,156,3281 0/0:50,6:56:80:0,80,1755 0/0:48,1:49:99:0,114,1806 0/0:59,6:65:99:0,109,2069 0/0:54,7:61:67:0,67,1662 0/0:35,2:37:69:0,69,1222 0/0:109,4:113:99:0,260,4221 0/0:125,17:142:99:0,248,4019 0/0:109,3:112:99:0,273,4197 0/0:427,31:458:99:0,894,14666 0/0:65,13:78:77:0,77,1475 0/0:80,15:95:90:0,90,2364 0/0:2774,387:3161:99:0,4848,85296 0/0:1749,201:1950:99:0,3489,56636 0/0:2706,382:3088:99:0,4690,81204 0/0:73,2:75:99:0,182,2341 0/0:231,22:253:99:0,526,7823 0/0:94,2:96:99:0,265,3511 0/0:22,0:22:68:0,68,831 0/0:438,44:482:99:0,944,13993 0/0:13,1:14:31:0,31,377 0/0:131,16:147:99:0,264,4839 0/0:186,26:212:99:0,356,6241 0/0:136,24:160:99:0,209,4625 0/0:107,10:117:99:0,236,2658 0/0:57,7:64:99:0,117,1755 0/0:195,23:218:99:0,408,5924 0/0:131,9:140:99:0,326,4623 0/0:135,7:142:99:0,342,3533 0/0:94,13:107:99:0,157,2955 0/0:177,13:190:99:0,430,5882 0/0:135,29:164:99:0,131,4287 0/0:123,4:127:99:0,335,4092 0/0:161,5:166:99:0,428,5506 0/0:34,4:38:69:0,69,796 0/0:50,5:55:99:0,112,1361 0/0:12,0:12:35:0,35,383 0/0:212,20:232:99:0,434,6209 0/0:319,70:389:99:0,382,8321 0/0:188,13:201:99:0,454,6912 0/0:130,12:142:99:0,288,4292 0/0:115,4:119:99:0,305,2942 0/0:168,9:177:99:0,426,5047 0/0:64,4:68:99:0,155,1567 0/0:68,2:70:99:0,182,1768 ./. 0/0:933,93:1026:99:0,2026,32116
chr13 10770 . C T 1011.86 . AC=11;AF=0.052;AN=212;BaseQRankSum=-1.468;ClippingRankSum=-0.001;DP=25760;ExcessHet=4.1962;FS=0.000;InbreedingCoeff=-0.0581;MLEAC=10;MLEAF=0.047;MQ=43.25;MQRankSum=-0.105;QD=1.02;ReadPosRankSum=1.276;SOR=0.744 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,117,1644 0/0:326,0:326:99:0,979,11844 0/1:11,1:12:4:4,0,410 0/0:238,0:238:99:0,715,8726 0/0:117,0:117:99:0,351,3730 0/0:146,0:146:99:0,433,4747 0/1:20,8:28:99:241,0,698 0/0:281,23:304:67:0,67,9828 0/0:85,2:87:99:0,197,2767 0/0:139,4:143:99:0,320,4512 0/1:91,12:103:56:56,0,2675 0/0:126,3:129:99:0,266,4430 0/0:56,1:57:99:0,170,2212 0/0:93,8:101:38:0,38,3209 0/0:119,0:119:99:0,363,4136 0/0:148,3:151:99:0,373,5109 0/0:98,5:103:99:0,115,3114 0/0:80,0:80:99:0,244,3018 0/0:35,0:35:99:0,108,1347 0/0:845,8:853:99:0,2329,30739 0/0:1,0:1:3:0,3,42 0/0:39,3:42:10:0,10,1408 0/0:1695,16:1711:99:0,4604,64496 0/0:39,3:42:10:0,10,1196 0/0:41,1:42:87:0,87,1621 0/0:28,2:30:14:0,14,1155 0/1:8,4:12:99:127,0,274 0/0:185,0:185:99:0,584,8251 0/0:124,1:125:99:0,350,5132 0/0:235,0:235:99:0,710,10172 0/0:983,2:985:99:0,2904,39907 0/0:22,0:22:66:0,66,924 0/1:125,13:138:99:106,0,4632 0/0:124,2:126:99:0,296,3982 0/0:20,0:20:60:0,60,832 0/0:13,1:14:3:0,3,439 0/0:217,0:217:99:0,648,8054 0/1:41,5:46:69:69,0,1450 0/0:148,0:148:99:0,449,5891 0/0:11,0:11:33:0,33,428 0/1:21,2:23:20:20,0,770 0/0:118,0:118:99:0,353,4000 0/0:70,0:70:99:0,216,2921 0/0:99,0:99:99:0,300,4056 0/0:66,1:67:99:0,191,2639 0/0:116,0:116:99:0,348,4387 0/0:158,0:158:99:0,473,5151 0/0:82,0:82:99:0,246,3167 0/0:52,0:52:99:0,156,2077 0/0:73,0:73:99:0,228,3119 0/0:81,2:83:99:0,169,3045 0/0:101,0:101:99:0,303,3657 0/0:113,0:113:99:0,339,4258 0/0:90,0:90:99:0,274,3584 0/0:172,0:172:99:0,528,6491 0/0:176,0:176:99:0,527,6661 0/0:73,0:73:99:0,221,2803 0/0:1121,10:1131:99:0,3004,42307 0/0:182,2:184:99:0,512,6257 0/1:35,14:49:99:411,0,1233 0/0:106,0:106:99:0,321,4345 0/0:59,1:60:99:0,143,2263 0/0:54,0:54:99:0,165,2133 0/0:65,0:65:99:0,198,2713 0/0:62,1:63:99:0,148,2383 0/0:37,2:39:80:0,80,1384 0/0:103,3:106:99:0,223,4410 0/0:167,0:167:99:0,500,6356 0/0:124,5:129:99:0,199,4813 0/1:419,34:453:67:67,0,16614 0/0:68,3:71:92:0,92,2336 0/0:109,0:109:99:0,327,4117 0/0:2936,82:3018:99:0,5947,111275 0/0:1905,0:1905:99:0,5723,75812 0/0:2908,75:2983:99:0,6194,111422 0/0:66,2:68:99:0,152,2399 0/0:288,4:292:99:0,752,10844 0/0:113,0:113:99:0,345,4517 0/0:7,0:7:21:0,21,279 0/0:491,13:504:99:0,1023,19233 0/0:8,0:8:24:0,24,331 0/0:180,0:180:99:0,544,7300 0/0:244,1:245:99:0,710,9441 0/0:190,0:190:99:0,570,7278 0/0:124,0:124:99:0,372,4138 0/0:72,0:72:99:0,216,2557 0/0:232,0:232:99:0,703,8161 0/0:152,0:152:99:0,461,5860 0/0:118,4:122:99:0,245,3687 0/0:134,0:134:99:0,408,5119 0/0:191,0:191:99:0,576,7392 0/0:213,0:213:99:0,650,8035 0/0:118,5:123:99:0,222,4165 0/0:151,4:155:99:0,307,5450 0/0:26,1:27:36:0,36,969 0/1:28,3:31:34:34,0,1111 0/0:5,0:5:15:0,15,182 0/0:256,0:256:99:0,767,9646 0/0:442,0:442:99:0,1329,16572 0/0:222,0:222:99:0,676,8829 0/0:146,4:150:99:0,356,5476 0/1:100,11:111:37:37,0,3044 0/0:180,0:180:99:0,553,6675 0/0:54,0:54:99:0,165,2173 0/0:46,2:48:95:0,95,1867 ./. 0/0:1113,0:1113:99:0,3355,44521
chr13 10820 . C A 1991.35 . AC=12;AF=0.060;AN=200;BaseQRankSum=-2.103;ClippingRankSum=-0.001;DP=24532;ExcessHet=4.8183;FS=0.000;InbreedingCoeff=-0.0448;MLEAC=12;MLEAF=0.060;MQ=43.27;MQRankSum=-1.176;QD=1.37;ReadPosRankSum=0.128;SOR=0.970 GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,74 0/0:344,0:344:99:0,1047,13638 ./. 0/0:256,22:278:35:0,35,9215 0/0:150,0:150:99:0,454,5861 0/0:142,5:147:99:0,253,5397 0/0:1,0:1:3:0,3,45 0/0:336,0:336:99:0,1027,14538 0/1:89,9:98:47:47,0,3079 0/0:104,4:108:99:0,180,3879 0/0:81,0:81:99:0,248,3429 ./. 0/1:50,9:59:99:172,0,1764 0/0:89,0:89:99:0,274,3822 0/1:94,11:105:99:149,0,3212 0/0:165,11:176:99:0,151,6273 0/0:109,0:109:99:0,331,4578 0/1:43,6:49:89:89,0,1577 0/0:40,1:41:82:0,82,1476 0/0:867,1:868:99:0,2615,35513 ./. 0/0:8,0:8:24:0,24,338 0/0:1933,0:1933:99:0,5895,79673 0/0:17,0:17:51:0,51,704 0/0:4,0:4:12:0,12,158 0/1:1,1:2:36:36,0,39 ./. 0/0:236,12:248:99:0,230,9420 0/0:162,0:162:99:0,503,7157 0/0:297,14:311:99:0,348,11866 0/0:1091,58:1149:99:0,1197,42767 0/0:1,0:1:3:0,3,34 0/0:227,0:227:99:0,698,9719 0/0:113,0:113:99:0,340,4592 ./. 0/0:1,0:1:3:0,3,45 0/0:260,0:260:99:0,792,10167 0/0:5,0:5:15:0,15,205 0/0:140,0:140:99:0,422,5517 ./. ./. 0/0:68,0:68:99:0,205,2641 0/0:67,3:70:81:0,81,2458 0/0:112,0:112:99:0,337,4556 0/0:91,0:91:99:0,292,4046 0/0:164,0:164:99:0,493,6669 0/0:119,0:119:99:0,358,4536 0/0:104,0:104:99:0,313,4097 0/0:69,0:69:99:0,209,2801 0/1:86,9:95:19:19,0,3275 0/0:99,0:99:99:0,302,4117 0/0:77,2:79:99:0,148,2682 0/0:146,0:146:99:0,459,6168 0/0:125,5:130:99:0,186,4689 0/0:111,9:120:34:0,34,3814 0/0:182,0:182:99:0,553,7554 0/0:115,9:124:27:0,27,4187 0/0:1103,0:1103:99:0,3350,45454 0/0:126,9:135:57:0,57,4190 0/0:94,0:94:99:0,298,4275 0/0:125,4:129:99:0,255,4975 0/0:72,0:72:99:0,217,2960 0/0:63,0:63:99:0,196,2784 0/0:90,1:91:99:0,233,3733 0/0:81,0:81:99:0,250,3248 0/0:53,0:53:99:0,160,2227 0/0:137,6:143:99:0,210,5378 0/0:185,0:185:99:0,557,7553 0/1:152,26:178:99:453,0,6140 0/0:531,0:531:99:0,1616,23209 0/0:69,0:69:99:0,211,2973 0/0:105,3:108:99:0,264,4103 0/0:1768,1:1769:99:0,5434,74625 0/0:2144,1:2145:99:0,6506,89089 0/0:1715,0:1715:99:0,5281,72737 0/0:83,0:83:99:0,260,3378 0/0:335,20:355:99:0,316,13031 0/0:116,4:120:99:0,203,4094 ./. 0/0:537,0:537:99:0,1638,22833 ./. 0/0:190,14:204:99:0,116,6941 0/0:268,4:272:99:0,668,10516 0/0:184,10:194:99:0,198,6953 0/0:102,0:102:99:0,306,3625 0/1:65,10:75:99:202,0,2196 0/0:139,10:149:99:0,118,4450 0/1:79,12:91:99:165,0,2391 0/0:104,0:104:99:0,322,3802 0/0:159,0:159:99:0,478,6285 0/0:213,11:224:99:0,326,7832 0/1:270,30:300:99:227,0,9814 0/0:178,0:178:99:0,545,7222 0/0:173,0:173:99:0,533,7229 0/0:4,0:4:12:0,12,166 0/0:2,0:2:6:0,6,72 0/0:1,0:1:3:0,3,36 0/0:279,0:279:99:0,852,11048 0/0:535,0:535:99:0,1613,21102 0/1:210,33:243:99:380,0,7117 0/0:199,17:216:15:0,15,7199 0/0:98,0:98:99:0,298,4009 0/1:137,21:158:99:223,0,4562 0/0:5,0:5:16:0,16,191 0/0:5,0:5:18:0,18,205 0/0:2,0:2:6:0,6,49 0/0:1200,49:1249:99:0,2017,47003
chr13 10825 . G C 210617.51 . AC=68;AF=0.366;AN=186;BaseQRankSum=-5.644;ClippingRankSum=-0.005;DP=24082;ExcessHet=75.1146;FS=1.189;InbreedingCoeff=-0.5598;MLEAC=69;MLEAF=0.371;MQ=43.37;MQRankSum=-5.006;QD=9.94;ReadPosRankSum=3.165;SOR=0.828 GT:AD:DP:GQ:PL ./. 0/1:276,72:348:99:1605,0,9093 ./. 0/1:197,63:260:99:1553,0,6458 0/1:77,59:136:99:1825,0,2394 0/1:85,36:121:99:1064,0,2954 ./. 0/1:119,210:329:99:6740,0,3324 0/1:67,21:88:99:585,0,2269 0/1:67,17:84:99:395,0,2320 0/1:30,35:65:99:1070,0,956 0/1:51,40:91:99:1197,0,1609 0/1:49,7:56:47:47,0,1706 0/1:41,44:85:99:1401,0,1284 0/1:74,16:90:99:304,0,2514 0/1:123,47:170:99:1197,0,4384 0/1:39,52:91:99:1566,0,1348 0/1:39,8:47:99:143,0,1340 0/0:32,2:34:17:0,17,1179 0/1:395,455:850:99:13650,0,11381 ./. 0/0:5,0:5:15:0,15,198 0/1:1148,769:1917:99:21803,0,36956 0/1:6,9:15:99:300,0,182 0/0:2,0:2:6:0,6,64 0/0:2,0:2:6:0,6,90 ./. 0/1:224,23:247:99:182,0,8496 0/1:130,32:162:99:809,0,4916 0/0:302,14:316:99:0,352,11858 0/1:830,325:1155:99:9004,0,29150 ./. 0/1:178,42:220:99:1028,0,6615 0/1:53,59:112:99:1783,0,1597 ./. ./. 0/1:212,43:255:99:755,0,6791 0/0:2,0:2:6:0,6,82 0/0:127,4:131:99:0,251,4883 ./. ./. 0/1:37,29:66:99:953,0,1126 0/0:66,2:68:99:0,119,2533 0/1:93,16:109:99:301,0,3335 0/0:93,0:93:99:0,279,3573 0/1:115,46:161:99:1240,0,3813 0/1:68,47:115:99:1187,0,1975 0/0:101,0:101:99:0,302,3817 0/1:57,14:71:99:352,0,2000 0/1:81,11:92:99:163,0,2912 0/0:97,0:97:99:0,290,3658 0/0:74,5:79:56:0,56,2391 0/0:145,0:145:99:0,435,5712 0/0:127,7:134:99:0,177,4655 0/0:110,8:118:86:0,86,3871 0/1:93,85:178:99:2771,0,2990 0/1:89,26:115:99:619,0,3125 0/1:537,558:1095:99:17387,0,16046 0/1:99,34:133:99:727,0,3078 0/0:88,0:88:99:0,264,3557 0/1:109,20:129:99:346,0,4022 0/1:49,21:70:99:615,0,1603 0/1:33,32:65:99:1068,0,1002 0/1:64,26:90:99:798,0,2286 0/1:61,24:85:99:618,0,1898 0/1:38,15:53:99:344,0,1275 0/1:104,34:138:99:887,0,3527 0/1:102,73:175:99:2246,0,3367 0/1:99,80:179:99:2545,0,3553 0/1:270,253:523:99:8885,0,9549 0/1:51,14:65:99:329,0,1846 0/1:93,11:104:99:199,0,3301 0/1:1026,741:1767:99:21942,0,33708 0/1:1415,698:2113:99:20269,0,47620 0/1:922,751:1673:99:22965,0,30022 0/1:71,16:87:99:296,0,2322 0/1:208,138:346:99:4079,0,6852 0/0:101,3:104:99:0,244,3528 ./. 0/1:289,258:547:99:8218,0,9623 ./. 0/1:181,26:207:99:407,0,6131 0/1:230,34:264:99:569,0,7915 0/1:148,45:193:99:1109,0,5030 0/1:82,13:95:99:158,0,2585 0/1:68,9:77:99:152,0,2248 0/1:128,13:141:32:32,0,3950 0/0:87,0:87:99:0,260,3045 0/0:100,0:100:99:0,300,3436 0/0:161,3:164:99:0,418,5750 0/1:198,25:223:99:273,0,6635 0/1:275,26:301:99:130,0,9848 0/1:124,37:161:99:899,0,4123 0/1:94,79:173:99:2376,0,2895 0/0:1,0:1:3:0,3,45 ./. ./. 0/0:264,18:282:99:0,227,9370 0/1:436,107:543:99:2205,0,14777 0/0:239,2:241:99:0,648,8933 0/0:217,8:225:99:0,382,7918 0/1:74,18:92:99:389,0,2397 0/1:118,35:153:99:798,0,3751 0/0:2,0:2:6:0,6,83 1/1:0,1:1:3:42,3,0 0/0:2,0:2:6:0,6,49 0/1:890,344:1234:99:9053,0,30822
chr13 10845 . TTCCGCCTCGCCGCCGCC T 1275.43 . AC=4;AF=0.022;AN=178;BaseQRankSum=-1.538;ClippingRankSum=-0.001;DP=28194;ExcessHet=3.1596;FS=0.000;InbreedingCoeff=-0.0307;MLEAC=4;MLEAF=0.022;MQ=43.48;MQRankSum=-18.821;QD=0.82;ReadPosRankSum=1.953;SOR=0.972 GT:AD:DP:GQ:PL ./. 0/0:411,4:415:99:0,1084,18064 ./. 0/0:309,0:309:99:0,940,13646 0/1:116,11:127:57:57,0,4631 0/1:73,7:80:49:49,0,3054 ./. 0/0:368,7:375:99:0,834,15956 0/0:78,3:81:99:0,134,3498 0/0:44,3:47:25:0,25,1917 0/0:33,1:34:70:0,70,1434 0/0:104,5:109:99:0,115,4402 0/0:69,0:69:99:0,213,3025 0/0:110,0:110:99:0,334,4854 0/0:58,0:58:99:0,189,2750 0/0:165,2:167:99:0,426,7314 0/0:62,0:62:99:0,195,2785 0/0:65,0:65:99:0,200,2852 0/0:20,1:21:28:0,28,904 0/0:951,33:984:99:0,1511,40588 ./. 0/0:1,0:1:3:0,3,45 0/0:2219,5:2224:99:0,6529,97321 0/0:22,0:22:66:0,66,935 ./. 0/0:1,0:1:3:0,3,45 ./. 0/0:297,0:297:99:0,914,13531 0/0:202,5:207:99:0,468,9200 0/0:377,0:377:99:0,1152,17064 0/0:1366,7:1373:99:0,3870,60891 ./. 0/0:256,5:261:99:0,599,11633 0/0:152,8:160:99:0,154,6455 ./. ./. 0/0:301,0:301:99:0,914,13413 ./. 0/0:166,0:166:99:0,513,7504 ./. ./. 0/1:65,5:70:15:15,0,2636 0/0:77,0:77:99:0,241,3544 0/0:137,0:137:99:0,418,6151 0/0:108,0:108:99:0,337,5029 0/0:186,2:188:99:0,488,8323 0/0:121,1:122:99:0,323,5251 0/0:110,0:110:99:0,337,4970 0/0:92,4:96:99:0,111,3918 0/0:106,0:106:99:0,328,4787 0/0:103,0:103:99:0,325,4795 0/0:91,0:91:99:0,279,4093 0/0:168,0:168:99:0,518,7697 0/0:154,0:154:99:0,474,6993 0/0:150,0:150:99:0,468,6861 0/0:208,13:221:99:0,126,8677 0/0:121,3:124:99:0,247,5366 0/1:1152,119:1271:99:1247,0,46814 0/0:159,2:161:99:0,397,6967 0/0:116,0:116:99:0,373,5573 0/0:161,0:161:99:0,489,7217 0/0:78,3:81:99:0,111,3330 0/0:59,4:63:36:0,36,2549 0/0:118,0:118:99:0,361,5300 0/0:102,2:104:99:0,225,4473 0/0:49,0:49:99:0,147,2177 0/0:151,3:154:99:0,335,6553 0/0:204,8:212:99:0,323,8657 0/0:206,0:206:99:0,631,9336 0/0:623,2:625:99:0,1809,27608 0/0:58,0:58:99:0,174,2586 0/0:124,4:128:99:0,222,5351 0/0:2054,11:2065:99:0,5803,90522 0/0:2469,18:2487:99:0,6828,109084 0/0:1999,10:2009:99:0,5641,87840 0/0:79,0:79:99:0,249,3661 0/0:411,7:418:99:0,1016,18080 0/0:138,0:138:99:0,415,6047 ./. 0/0:615,35:650:99:0,395,25642 ./. 0/0:242,0:242:99:0,733,10704 0/0:327,0:327:99:0,991,14409 0/0:227,1:228:99:0,655,10039 0/0:102,0:102:99:0,319,4647 0/0:82,4:86:85:0,85,3562 0/0:164,0:164:99:0,511,7404 0/0:96,0:96:99:0,294,4330 0/0:115,0:115:99:0,358,5323 0/0:193,0:193:99:0,586,8659 0/0:283,0:283:99:0,865,12601 0/0:354,0:354:99:0,1089,16004 0/0:190,0:190:99:0,589,8553 0/0:197,2:199:99:0,512,8667 0/0:1,0:1:3:0,3,45 ./. ./. 0/0:336,0:336:99:0,1043,15424 0/0:652,1:653:99:0,1949,29130 0/0:304,0:304:99:0,944,13732 0/0:258,0:258:99:0,786,11542 0/0:100,4:104:99:0,160,4515 0/0:190,2:192:99:0,502,8339 0/0:1,0:1:3:0,3,45 ./. ./. 0/0:1455,14:1469:99:0,3914,64916
chr13 10851 . C A 336.46 . AC=5;AF=0.029;AN=174;BaseQRankSum=-3.143;ClippingRankSum=-0.001;DP=22671;ExcessHet=0.1274;FS=0.000;InbreedingCoeff=0.2371;MLEAC=4;MLEAF=0.023;MQ=43.53;MQRankSum=-0.181;QD=2.63;ReadPosRankSum=1.377;SOR=0.769 GT:AD:DP:GQ:PL ./. 0/0:332,0:332:99:0,993,12187 ./. 0/0:238,0:238:99:0,712,8896 0/0:89,0:89:99:0,267,3432 0/0:50,0:50:99:0,150,1961 ./. 0/0:306,19:325:99:0,423,11782 0/0:48,0:48:99:0,153,1897 0/0:25,0:25:78:0,78,1013 0/0:18,0:18:54:0,54,699 0/0:85,0:85:99:0,257,3099 0/0:41,0:41:99:0,123,1589 0/1:62,17:79:99:292,0,2300 0/0:34,0:34:99:0,102,1378 0/0:113,0:113:99:0,342,4547 0/1:32,4:36:52:52,0,1221 0/0:43,3:46:17:0,17,1494 0/0:17,0:17:51:0,51,715 0/0:824,0:824:99:0,2468,29354 ./. ./. 0/0:1782,0:1782:99:0,5347,65687 0/1:11,2:13:43:43,0,403 ./. 1/1:0,1:1:3:38,3,0 ./. 0/0:248,0:248:99:0,744,10334 0/0:178,0:178:99:0,539,7509 0/0:313,0:313:99:0,942,13098 0/0:1112,1:1113:99:0,3329,43167 ./. 0/0:231,0:231:99:0,697,9892 0/0:120,0:120:99:0,363,4451 ./. ./. 0/0:249,0:249:99:0,744,9029 ./. 0/0:118,0:118:99:0,355,4459 ./. ./. 0/0:51,0:51:99:0,153,1924 0/0:68,0:68:99:0,205,2770 0/0:106,0:106:99:0,319,4278 0/0:91,0:91:99:0,279,3944 0/0:159,0:159:99:0,487,6490 0/0:94,0:94:99:0,282,3445 0/0:92,0:92:99:0,285,3924 0/0:81,0:81:99:0,242,3220 0/0:94,0:94:99:0,282,3750 0/0:81,0:81:99:0,250,3568 0/0:71,0:71:99:0,215,2443 0/0:140,0:140:99:0,426,5845 0/0:134,0:134:99:0,406,5269 0/0:105,0:105:99:0,324,4354 0/0:184,0:184:99:0,553,7045 0/0:103,0:103:99:0,312,4076 0/0:1076,0:1076:99:0,3219,39573 0/0:120,0:120:99:0,359,4262 0/0:99,0:99:99:0,307,4432 0/0:134,0:134:99:0,403,5400 0/0:63,0:63:99:0,190,2483 0/0:49,4:53:51:0,51,1849 0/0:88,0:88:99:0,266,3583 0/0:88,0:88:99:0,264,3270 0/0:40,0:40:99:0,120,1638 0/0:133,0:133:99:0,403,5378 0/0:167,0:167:99:0,500,6370 0/0:169,6:175:99:0,357,6957 0/0:513,19:532:99:0,867,21288 0/0:34,3:37:9:0,9,1409 0/0:95,0:95:99:0,285,3758 0/0:1647,98:1745:99:0,1922,59062 0/0:2044,49:2093:99:0,4528,74105 0/0:1575,75:1650:99:0,2360,57096 0/0:57,0:57:99:0,174,2251 0/0:330,0:330:99:0,996,12596 0/0:98,0:98:99:0,294,3610 ./. 0/0:525,25:550:99:0,742,20053 ./. 0/0:174,0:174:99:0,532,6482 0/0:249,0:249:99:0,749,9380 0/0:158,0:158:99:0,478,5894 0/0:75,0:75:99:0,225,2840 0/0:74,0:74:99:0,223,2914 0/0:121,0:121:99:0,365,4412 0/0:67,0:67:99:0,204,2514 0/0:90,0:90:99:0,277,3556 0/0:153,0:153:99:0,471,6069 0/0:222,0:222:99:0,667,8089 0/0:274,0:274:99:0,835,10788 0/0:135,4:139:99:0,274,5096 0/0:153,7:160:99:0,207,5754 ./. ./. ./. 0/0:268,0:268:99:0,807,10235 0/0:540,0:540:99:0,1618,20284 0/0:238,0:238:99:0,715,8862 0/0:195,0:195:99:0,589,7509 0/0:81,0:81:99:0,249,3250 0/0:153,0:153:99:0,462,5608 0/0:1,0:1:3:0,3,42 ./. ./. 0/0:1174,2:1176:99:0,3480,44810
chr13 10862 . C T 18153.25 . AC=17;AF=0.100;AN=170;BaseQRankSum=-10.877;ClippingRankSum=-0.003;DP=22424;ExcessHet=6.8655;FS=2.862;InbreedingCoeff=-0.1133;MLEAC=17;MLEAF=0.100;MQ=43.49;MQRankSum=0.167;QD=3.26;ReadPosRankSum=4.770;SOR=1.193 GT:AD:DP:GQ:PL ./. 0/0:321,0:321:99:0,964,12077 ./. 0/0:199,17:216:59:0,59,6836 0/0:63,0:63:99:0,191,2448 0/0:35,0:35:99:0,108,1396 ./. 0/1:187,109:296:99:2751,0,6303 0/0:42,0:42:99:0,127,1651 0/0:6,0:6:18:0,18,249 0/1:7,2:9:49:49,0,250 0/0:88,0:88:99:0,265,3284 0/0:44,1:45:95:0,95,1611 0/1:43,34:77:99:883,0,1486 0/0:14,0:14:43:0,43,572 0/0:113,1:114:99:0,333,4505 0/1:16,7:23:99:203,0,590 0/0:41,4:45:53:0,53,1425 0/0:16,0:16:48:0,48,619 0/0:830,0:830:99:0,2498,31210 ./. ./. 0/0:1682,96:1778:99:0,2216,61083 0/1:9,5:14:99:143,0,298 ./. ./. ./. 0/0:244,0:244:99:0,734,10157 0/0:179,0:179:99:0,541,7497 0/0:318,0:318:99:0,959,13308 0/0:1105,0:1105:99:0,3334,44008 ./. 0/0:214,0:214:99:0,654,9186 0/0:129,0:129:99:0,388,4812 ./. ./. 0/0:248,3:251:99:0,634,9174 ./. 0/0:129,4:133:99:0,245,4885 ./. ./. 0/0:49,0:49:99:0,148,1934 0/0:63,0:63:99:0,190,2520 0/1:100,12:112:99:146,0,3626 0/0:88,0:88:99:0,265,3539 0/0:154,0:154:99:0,461,5868 0/0:95,0:95:99:0,286,3445 0/0:87,0:87:99:0,261,3452 0/1:72,8:80:62:62,0,2617 0/1:83,8:91:60:60,0,3071 0/0:81,0:81:99:0,249,3429 0/0:72,4:76:99:0,130,2446 0/0:135,0:135:99:0,406,5361 0/0:116,3:119:99:0,248,4515 0/0:98,9:107:4:0,4,3680 0/0:182,0:182:99:0,547,7106 0/0:99,0:99:99:0,301,4011 0/0:1057,1:1058:99:0,3180,40078 0/0:121,0:121:99:0,364,4373 0/0:99,0:99:99:0,313,4374 0/0:131,0:131:99:0,395,5373 0/0:64,0:64:99:0,192,2606 0/1:45,6:51:67:67,0,1708 0/0:96,0:96:99:0,289,3919 0/0:79,0:79:99:0,240,3108 0/0:36,0:36:99:0,108,1408 0/0:124,0:124:99:0,374,4979 0/0:174,0:174:99:0,525,6673 0/1:117,50:167:99:1497,0,4388 0/1:397,124:521:99:3309,0,15136 0/1:23,7:30:99:142,0,824 0/0:90,0:90:99:0,271,3664 0/1:1425,272:1697:99:4211,0,49550 0/0:2016,56:2072:99:0,4424,76142 0/1:1409,209:1618:99:2375,0,48893 0/0:57,0:57:99:0,171,2180 0/0:325,0:325:99:0,973,12215 0/0:103,0:103:99:0,310,3906 ./. 0/1:469,97:566:99:1880,0,17333 ./. 0/0:198,0:198:99:0,600,7815 0/0:258,6:264:99:0,595,9682 0/0:190,0:190:99:0,572,7310 0/1:63,11:74:99:115,0,1957 0/0:69,0:69:99:0,210,2692 0/0:102,0:102:99:0,307,3794 0/0:66,0:66:99:0,199,2534 0/0:85,0:85:99:0,255,3164 0/0:153,2:155:99:0,387,6102 0/0:223,7:230:99:0,470,8293 0/0:283,0:283:99:0,851,11111 0/0:128,6:134:99:0,203,4804 0/1:127,24:151:99:440,0,4473 ./. ./. ./. 0/0:256,11:267:99:0,436,9498 0/0:479,17:496:99:0,1038,17730 0/0:232,1:233:99:0,680,8880 0/0:189,0:189:99:0,575,7526 0/0:82,0:82:99:0,253,3271 0/0:157,0:157:99:0,474,5824 ./. ./. ./. 0/0:1174,0:1174:99:0,3513,46008
chr13 10864 . C G 1387.91 . AC=2;AF=0.012;AN=170;BaseQRankSum=-3.575;ClippingRankSum=-0.001;DP=22654;ExcessHet=3.0361;FS=0.000;InbreedingCoeff=-0.0120;MLEAC=2;MLEAF=0.012;MQ=43.47;MQRankSum=0.866;QD=6.09;ReadPosRankSum=-1.898;SOR=0.966 GT:AD:DP:GQ:PL ./. 0/0:323,0:323:99:0,977,12247 ./. 0/0:222,0:222:99:0,667,8427 0/0:67,0:67:99:0,203,2666 0/0:35,0:35:99:0,111,1509 ./. 0/0:307,0:307:99:0,927,12591 0/0:41,0:41:99:0,124,1643 0/0:7,0:7:21:0,21,291 0/0:10,0:10:30:0,30,409 0/0:92,0:92:99:0,280,3504 0/0:48,0:48:99:0,148,1903 0/0:88,0:88:99:0,265,3622 0/0:16,0:16:51:0,51,643 0/0:118,0:118:99:0,355,4734 0/0:23,0:23:72:0,72,994 0/0:49,1:50:99:0,140,1857 0/0:18,0:18:54:0,54,678 0/0:846,0:846:99:0,2546,32039 ./. ./. 0/0:1815,0:1815:99:0,5463,70311 0/0:14,0:14:42:0,42,574 ./. ./. ./. 0/0:243,0:243:99:0,736,10053 0/0:184,0:184:99:0,563,8021 0/0:316,0:316:99:0,967,13267 0/0:1104,3:1107:99:0,3244,43821 ./. 0/0:219,0:219:99:0,676,9528 0/0:130,0:130:99:0,393,4824 ./. ./. 0/0:252,0:252:99:0,763,9333 ./. 0/0:126,8:134:99:0,157,4671 ./. ./. 0/0:50,0:50:99:0,150,1913 0/0:62,0:62:99:0,186,2489 0/0:114,1:115:99:0,336,4549 0/0:87,0:87:99:0,271,3838 0/0:155,0:155:99:0,467,6087 0/0:101,0:101:99:0,303,3596 0/0:86,0:86:99:0,262,3595 0/0:81,1:82:99:0,237,3156 0/0:91,0:91:99:0,273,3657 0/0:82,0:82:99:0,264,3727 0/0:77,0:77:99:0,234,2789 0/0:135,0:135:99:0,417,5769 0/0:121,0:121:99:0,365,4864 0/0:109,0:109:99:0,329,4495 0/0:182,0:182:99:0,548,7200 0/0:100,0:100:99:0,301,4000 0/0:1088,0:1088:99:0,3288,41444 0/0:124,0:124:99:0,373,4480 0/0:102,0:102:99:0,319,4652 0/0:138,0:138:99:0,417,5470 0/0:64,0:64:99:0,194,2565 0/0:52,0:52:99:0,156,2095 0/0:96,0:96:99:0,291,3896 0/0:79,0:79:99:0,237,3063 0/0:33,0:33:99:0,102,1414 0/0:122,0:122:99:0,371,4863 0/0:174,0:174:99:0,526,6898 0/0:174,1:175:99:0,524,7317 0/0:528,0:528:99:0,1605,22520 0/0:30,0:30:93:0,93,1322 0/0:90,0:90:99:0,273,3624 0/0:1727,0:1727:99:0,5206,67811 0/0:2115,0:2115:99:0,6362,81661 0/0:1655,0:1655:99:0,4989,63965 0/0:58,0:58:99:0,177,2332 0/0:324,0:324:99:0,986,12656 0/0:102,1:103:99:0,305,3910 ./. 0/0:568,0:568:99:0,1711,23252 ./. 0/0:202,0:202:99:0,613,7922 0/0:270,0:270:99:0,812,10351 0/0:192,0:192:99:0,579,7427 0/0:76,0:76:99:0,229,2944 0/1:55,15:70:99:283,0,1909 0/0:105,0:105:99:0,318,3868 0/0:69,0:69:99:0,211,2641 0/0:86,0:86:99:0,265,3568 0/1:109,49:158:99:1158,0,3623 0/0:235,0:235:99:0,714,9034 0/0:282,0:282:99:0,852,11349 0/0:138,0:138:99:0,422,5607 0/0:151,1:152:99:0,426,5951 ./. ./. ./. 0/0:270,0:270:99:0,821,10934 0/0:507,0:507:99:0,1534,19783 0/0:232,0:232:99:0,707,8994 0/0:194,0:194:99:0,599,7920 0/0:86,0:86:99:0,265,3465 0/0:160,1:161:99:0,477,5962 ./. ./. ./. 0/0:1171,1:1172:99:0,3503,45875
chr13 10900 . G C 7227.51 . AC=9;AF=0.051;AN=178;BaseQRankSum=2.074;ClippingRankSum=-0.001;DP=23672;ExcessHet=3.9331;FS=0.000;InbreedingCoeff=-0.0594;MLEAC=9;MLEAF=0.051;MQ=43.43;MQRankSum=-0.780;QD=7.33;ReadPosRankSum=0.032;SOR=0.922 GT:AD:DP:GQ:PL ./. 0/0:325,1:326:99:0,988,13807 0/0:1,0:1:3:0,3,45 0/0:216,0:216:99:0,655,9041 0/0:108,0:108:99:0,343,4904 0/0:57,0:57:99:0,178,2582 ./. 0/0:312,0:312:99:0,965,13446 0/0:47,0:47:99:0,147,2160 0/0:18,0:18:57:0,57,852 0/0:12,0:12:36:0,36,540 0/0:100,0:100:99:0,319,4613 0/0:51,0:51:99:0,156,2213 0/0:65,0:65:99:0,199,2715 0/0:41,0:41:99:0,126,1877 0/0:144,0:144:99:0,442,6452 0/0:37,0:37:99:0,114,1664 0/0:47,0:47:99:0,159,2186 0/0:35,0:35:99:0,105,1522 0/0:836,1:837:99:0,2537,36068 ./. ./. 0/0:1679,0:1679:99:0,5181,71925 0/0:25,0:25:80:0,80,1124 0/0:2,0:2:9:0,9,130 0/0:1,0:1:3:0,3,45 ./. 0/0:269,2:271:99:0,794,11672 0/0:167,9:176:99:0,204,6151 0/0:375,0:375:99:0,1134,16176 0/0:1069,1:1070:99:0,3238,45416 ./. 0/1:165,44:209:99:1014,0,6045 0/0:152,0:152:99:0,466,6569 ./. ./. 0/0:263,0:263:99:0,811,11016 ./. 0/0:123,0:123:99:0,378,5251 ./. ./. 0/0:85,1:86:99:0,231,3796 0/0:55,0:55:99:0,180,2573 0/0:129,0:129:99:0,397,5686 0/1:69,22:91:99:461,0,2260 0/0:150,1:151:99:0,441,6010 0/0:136,0:136:99:0,412,6022 0/0:87,1:88:99:0,251,3065 0/0:85,0:85:99:0,262,3720 0/0:88,0:88:99:0,273,3906 0/1:74,30:104:99:822,0,2327 0/0:99,0:99:99:0,313,4504 0/0:148,2:150:99:0,398,5232 0/0:139,0:139:99:0,434,6074 0/0:156,0:156:99:0,494,7181 0/0:151,0:151:99:0,463,6595 0/0:88,0:88:99:0,268,3678 0/0:1111,0:1111:99:0,3423,47927 0/0:152,0:152:99:0,466,6612 0/1:46,60:106:99:1852,0,1304 0/0:146,0:146:99:0,442,6293 0/0:62,0:62:99:0,193,2489 0/0:42,0:42:99:0,135,1884 0/0:99,0:99:99:0,303,4309 0/0:96,0:96:99:0,289,4062 0/1:30,6:36:78:78,0,1028 0/0:129,0:129:99:0,405,5602 0/0:183,0:183:99:0,556,7611 0/0:183,0:183:99:0,560,7890 0/0:564,0:564:99:0,1735,24896 0/1:28,20:48:99:597,0,1037 0/0:107,0:107:99:0,328,4831 0/0:1779,0:1779:99:0,5548,75876 0/0:2183,0:2183:99:0,6772,92541 0/0:1805,0:1805:99:0,5641,75958 0/0:62,5:67:40:0,40,2368 0/0:329,0:329:99:0,1007,14115 0/0:92,0:92:99:0,282,3890 ./. 0/0:570,0:570:99:0,1750,25204 ./. 0/0:210,0:210:99:0,637,8960 0/0:277,0:277:99:0,848,11611 0/0:213,0:213:99:0,654,8952 0/0:77,0:77:99:0,240,3157 0/0:72,0:72:99:0,229,3302 0/0:168,0:168:99:0,532,7521 0/0:112,0:112:99:0,349,4954 0/1:66,35:101:99:945,0,1991 0/0:146,0:146:99:0,448,6428 0/0:239,0:239:99:0,724,10155 0/0:253,0:253:99:0,770,10913 0/0:129,9:138:99:0,216,5223 0/0:157,0:157:99:0,490,6888 ./. ./. ./. 0/0:289,0:289:99:0,877,11556 0/0:495,0:495:99:0,1516,21369 0/0:245,0:245:99:0,765,10642 0/1:153,45:198:99:982,0,5812 0/1:67,26:93:99:617,0,2502 0/0:175,0:175:99:0,542,7779 ./. 0/0:2,0:2:6:0,6,90 ./. 0/0:1218,0:1218:99:0,3731,51793
chr13 10905 . A G 40909.64 . AC=27;AF=0.145;AN=186;BaseQRankSum=13.114;ClippingRankSum=-0.001;DP=23892;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4470;MLEAC=25;MLEAF=0.134;MQ=43.45;MQRankSum=-0.950;QD=19.69;ReadPosRankSum=0.000;SOR=0.690 GT:AD:DP:GQ:PL ./. 0/0:299,2:301:99:0,858,9072 0/0:1,0:1:3:0,3,27 0/0:197,0:197:99:0,581,6058 0/0:117,0:117:99:0,346,4087 0/0:61,0:61:99:0,185,2252 ./. 0/0:290,0:290:99:0,861,9406 0/0:51,0:51:99:0,153,1908 0/0:22,0:22:66:0,66,875 0/0:14,0:14:42:0,42,497 0/0:107,0:107:99:0,317,3356 0/0:48,1:49:99:0,138,1611 0/0:54,0:54:99:0,161,1893 0/0:44,0:44:99:0,132,1699 0/0:153,0:153:99:0,457,5643 0/0:40,0:40:99:0,119,1428 0/0:45,0:45:99:0,136,1593 0/0:40,0:40:99:0,119,1469 0/0:794,3:797:99:0,2269,26152 ./. ./. 0/0:1618,5:1623:99:0,4742,49585 0/0:28,0:28:83:0,83,833 0/0:4,0:4:12:0,12,160 0/0:2,0:2:6:0,6,79 ./. 0/0:243,6:249:99:0,666,7920 0/1:75,87:162:99:2884,0,1893 0/0:340,2:342:99:0,975,10975 0/0:1035,0:1035:99:0,3031,31154 0/0:1,0:1:3:0,3,36 0/1:83,125:208:99:4123,0,2117 0/0:152,1:153:99:0,445,4519 ./. ./. 0/0:246,1:247:99:0,718,7278 ./. 0/0:110,1:111:99:0,317,3460 ./. ./. 0/0:92,1:93:99:0,232,2963 0/0:58,1:59:99:0,165,1888 0/0:127,0:127:99:0,375,4190 1/1:6,84:90:99:3049,108,0 0/1:97,49:146:99:1288,0,2424 0/0:142,0:142:99:0,424,4574 1/1:3,79:82:99:2410,163,0 0/0:79,0:79:99:0,234,2696 0/0:86,0:86:99:0,254,2927 1/1:4,101:105:99:3609,147,0 0/0:106,0:106:99:0,317,3476 1/1:11,138:149:99:4487,158,0 0/0:130,1:131:99:0,377,4087 0/0:167,0:167:99:0,502,5899 0/0:145,2:147:99:0,419,4874 0/0:73,1:74:99:0,207,2329 0/0:1086,4:1090:99:0,3177,34688 0/0:156,0:156:99:0,463,4768 1/1:3,101:104:99:3976,222,0 0/0:136,2:138:99:0,394,4432 0/0:51,4:55:99:0,130,1615 0/0:37,3:40:94:0,94,1326 0/0:87,5:92:99:0,224,2792 0/0:95,3:98:99:0,258,2830 0/1:15,14:29:99:432,0,361 0/0:120,2:122:99:0,345,3808 0/0:170,0:170:99:0,499,5309 0/0:150,0:150:99:0,458,5413 0/0:538,5:543:99:0,1556,18920 0/1:22,31:53:99:1121,0,646 0/0:110,0:110:99:0,328,3889 0/0:1731,8:1739:99:0,5010,52282 0/0:2100,10:2110:99:0,6080,62697 0/0:1737,15:1752:99:0,4974,50215 0/1:36,33:69:99:948,0,1060 0/0:308,0:308:99:0,911,10003 0/0:87,0:87:99:0,255,2686 ./. 0/0:559,1:560:99:0,1648,18620 ./. 0/0:199,0:199:99:0,581,6079 0/0:256,2:258:99:0,737,7817 0/0:190,3:193:99:0,534,5545 0/1:49,29:78:99:763,0,1295 0/0:72,0:72:99:0,214,2518 0/0:184,0:184:99:0,548,6095 0/0:112,0:112:99:0,335,4024 1/1:2,96:98:99:3617,244,0 0/0:139,0:139:99:0,415,4825 0/0:224,3:227:99:0,636,6577 0/0:234,0:234:99:0,698,7676 0/1:72,72:144:99:2200,0,2382 0/0:147,2:149:99:0,429,5291 1/1:0,1:1:3:34,3,0 1/1:0,1:1:3:35,3,0 ./. 0/1:173,101:274:99:2625,0,4274 0/0:490,6:496:99:0,1407,14973 0/0:233,1:234:99:0,674,6834 0/1:127,65:192:99:2016,0,3131 0/1:49,46:95:99:1525,0,1304 0/0:169,0:169:99:0,506,5670 0/0:1,0:1:3:0,3,36 0/0:3,0:3:9:0,9,115 ./. 0/0:1146,0:1146:99:0,3358,34629
chr13 10944 . G A 28660.72 . AC=40;AF=0.187;AN=214;BaseQRankSum=-2.781;ClippingRankSum=-0.001;DP=23429;ExcessHet=22.5920;FS=0.000;InbreedingCoeff=-0.2398;MLEAC=40;MLEAF=0.187;MQ=43.28;MQRankSum=0.847;QD=3.41;ReadPosRankSum=-1.101;SOR=0.722 GT:AD:DP:GQ:PL 0/1:5,1:6:23:23,0,169 0/0:348,0:348:99:0,1045,13247 0/0:4,0:4:12:0,12,180 0/1:253,37:290:99:502,0,8618 0/0:127,0:127:99:0,381,4617 0/1:82,9:91:59:59,0,2742 0/0:9,0:9:27:0,27,353 0/0:342,1:343:99:0,1017,12887 0/1:50,13:63:99:267,0,1654 0/0:28,3:31:2:0,2,988 0/0:22,0:22:66:0,66,840 0/1:110,21:131:99:263,0,3491 0/1:53,9:62:99:146,0,1770 0/0:121,0:121:99:0,361,4144 0/1:51,16:67:99:434,0,1711 0/0:142,7:149:99:0,171,4986 0/0:53,0:53:99:0,159,2082 0/1:60,13:73:99:216,0,1938 0/1:59,9:68:99:164,0,2070 0/0:897,0:897:99:0,2687,32524 0/0:4,0:4:18:0,18,252 0/0:15,0:15:45:0,45,590 0/0:1575,0:1575:99:0,4744,60694 0/0:41,0:41:99:0,122,1358 0/0:22,0:22:69:0,69,939 0/1:11,4:15:99:129,0,438 0/0:3,0:3:15:0,15,225 0/1:218,62:280:99:1690,0,8135 0/0:165,0:165:99:0,496,6920 0/1:248,105:353:99:2982,0,9242 0/1:931,122:1053:99:1908,0,34019 0/0:11,0:11:33:0,33,452 0/0:251,0:251:99:0,761,10336 0/0:187,0:187:99:0,563,6190 0/0:6,0:6:18:0,18,252 0/0:2,0:2:6:0,6,72 0/0:278,0:278:99:0,835,10134 0/0:15,0:15:45:0,45,629 0/1:97,25:122:99:561,0,3483 0/0:4,0:4:15:0,15,185 0/0:9,0:9:27:0,27,386 0/0:135,0:135:99:0,404,4580 0/1:51,15:66:99:404,0,1853 0/0:118,0:118:99:0,357,4747 0/0:94,0:94:99:0,282,3772 0/0:141,0:141:99:0,423,5492 0/0:182,0:182:99:0,545,6340 0/0:115,1:116:99:0,317,4555 0/0:85,0:85:99:0,260,3380 0/1:74,11:85:99:186,0,2706 0/0:122,0:122:99:0,370,4944 0/0:133,8:141:99:0,122,4051 0/0:181,0:181:99:0,546,7039 0/1:127,21:148:99:338,0,4487 0/1:183,31:214:99:455,0,6000 0/0:151,0:151:99:0,454,5625 0/1:89,14:103:99:208,0,3133 0/0:1183,0:1183:99:0,3559,45123 0/1:176,39:215:99:808,0,5210 0/0:117,0:117:99:0,367,4969 0/0:142,11:153:99:0,122,5371 0/0:83,0:83:99:0,251,3223 0/0:59,0:59:99:0,177,2321 0/1:94,9:103:42:42,0,3416 0/0:94,0:94:99:0,286,3688 0/0:58,0:58:99:0,174,2210 0/1:147,15:162:79:79,0,5299 0/0:212,0:212:99:0,638,8306 0/1:168,33:201:99:695,0,6342 0/0:578,0:578:99:0,1746,24422 0/0:88,0:88:99:0,267,3486 0/1:128,14:142:72:72,0,4626 0/0:1055,0:1055:99:0,3183,41422 0/0:1512,0:1512:99:0,4541,59361 0/0:942,0:942:99:0,2830,36688 0/0:127,0:127:99:0,380,4504 0/1:294,36:330:99:315,0,10426 0/1:86,22:108:99:417,0,2844 0/1:4,1:5:30:30,0,157 0/0:568,1:569:99:0,1693,22988 0/0:1,0:1:3:0,3,45 0/1:170,43:213:99:948,0,5669 0/1:284,25:309:11:11,0,9776 0/1:209,42:251:99:767,0,7495 0/0:110,0:110:99:0,328,3730 0/1:48,48:96:99:1398,0,1558 0/1:228,48:276:99:856,0,6637 0/1:142,46:188:99:1101,0,4327 0/0:157,0:157:99:0,471,5525 0/1:101,68:169:99:1933,0,3259 0/1:197,28:225:99:410,0,6862 0/1:150,94:244:99:2904,0,5035 0/0:203,0:203:99:0,607,7374 0/0:211,0:211:99:0,638,7558 0/0:17,0:17:51:0,51,690 0/0:11,0:11:33:0,33,433 0/0:4,0:4:12:0,12,180 0/0:290,0:290:99:0,872,11197 0/0:497,0:497:99:0,1496,19152 0/1:181,81:262:99:2236,0,6062 0/1:138,39:177:99:941,0,4946 0/0:126,0:126:99:0,378,4405 0/1:180,24:204:99:251,0,5525 0/0:13,0:13:39:0,39,551 0/0:27,0:27:81:0,81,1104 0/0:1,0:1:3:0,3,45 0/1:1108,141:1249:99:1845,0,40389
chr13 10948 . C G 63.58 . AC=1;AF=4.673e-03;AN=214;BaseQRankSum=-0.230;ClippingRankSum=-0.001;DP=23711;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0092;MLEAC=1;MLEAF=4.673e-03;MQ=43.29;MQRankSum=-0.315;QD=0.26;ReadPosRankSum=-0.571;SOR=0.635 GT:AD:DP:GQ:PL 0/0:6,0:6:18:0,18,242 0/0:357,0:357:99:0,1080,15850 0/0:5,0:5:15:0,15,215 0/0:300,0:300:99:0,913,13084 0/0:130,0:130:99:0,394,5781 0/0:94,0:94:99:0,286,4153 0/0:9,0:9:27:0,27,405 0/0:345,0:345:99:0,1053,15509 0/0:64,0:64:99:0,195,2727 0/0:32,0:32:96:0,96,1424 0/0:24,0:24:72:0,72,1051 0/0:134,0:134:99:0,409,5758 0/0:64,1:65:99:0,163,2819 0/0:125,0:125:99:0,379,5553 0/0:64,3:67:69:0,69,2685 0/0:153,0:153:99:0,467,6853 0/0:54,0:54:99:0,163,2420 0/0:84,0:84:99:0,256,3592 0/0:67,1:68:99:0,167,2912 0/0:905,0:905:99:0,2756,40483 0/0:6,0:6:18:0,18,270 0/0:18,0:18:54:0,54,784 0/0:1597,0:1597:99:0,4867,71934 0/0:41,0:41:99:0,126,1852 0/0:28,0:28:84:0,84,1220 0/0:15,0:15:45:0,45,669 0/0:5,0:5:15:0,15,225 0/0:272,2:274:99:0,752,12118 0/0:160,0:160:99:0,499,7339 0/0:342,8:350:99:0,789,14840 0/0:1012,50:1062:99:0,1199,43060 0/0:12,0:12:36:0,36,532 0/0:250,0:250:99:0,764,11306 0/0:185,0:185:99:0,563,8299 0/0:9,0:9:27:0,27,380 0/0:3,0:3:9:0,9,135 0/0:284,0:284:99:0,857,12713 0/0:17,0:17:51:0,51,750 0/0:127,0:127:99:0,388,5630 0/0:5,0:5:15:0,15,225 0/0:11,0:11:33:0,33,480 0/0:144,0:144:99:0,433,6354 0/0:61,4:65:62:0,62,2563 0/0:120,0:120:99:0,364,5440 0/0:96,0:96:99:0,297,4346 0/0:140,0:140:99:0,427,6302 0/0:187,0:187:99:0,569,8259 0/0:114,0:114:99:0,357,5208 0/0:86,0:86:99:0,271,4003 0/0:84,3:87:99:0,140,3642 0/0:125,0:125:99:0,379,5575 0/0:143,4:147:99:0,358,6192 0/0:181,0:181:99:0,557,8241 0/0:142,4:146:99:0,301,6227 0/0:213,6:219:99:0,435,9262 0/0:154,0:154:99:0,470,6836 0/0:103,3:106:99:0,212,4426 0/0:1202,0:1202:99:0,3662,53910 0/0:222,7:229:99:0,446,9264 0/0:119,0:119:99:0,361,5386 0/0:153,0:153:99:0,469,6890 0/0:86,0:86:99:0,261,3822 0/0:56,0:56:99:0,174,2552 0/0:98,0:98:99:0,295,4359 0/0:97,0:97:99:0,295,4323 0/0:57,0:57:99:0,183,2644 0/0:168,1:169:99:0,473,7451 0/0:220,0:220:99:0,662,9794 0/0:194,7:201:99:0,350,8332 0/0:580,0:580:99:0,1779,26317 0/0:93,0:93:99:0,280,4142 0/0:146,0:146:99:0,439,6386 0/0:1054,0:1054:99:0,3230,47677 0/0:1509,0:1509:99:0,4611,68190 0/0:945,0:945:99:0,2899,42763 0/0:128,0:128:99:0,391,5744 0/0:342,3:345:99:0,918,14861 0/0:109,0:109:99:0,333,4651 0/0:5,0:5:15:0,15,225 0/0:577,0:577:99:0,1766,26063 0/0:1,0:1:3:0,3,45 0/0:216,1:217:99:0,622,9367 0/0:304,5:309:99:0,820,13417 0/0:251,1:252:99:0,731,11004 0/0:110,0:110:99:0,339,4914 0/0:97,0:97:99:0,298,3991 0/0:272,10:282:99:0,560,11421 0/0:182,10:192:99:0,219,7419 0/0:160,0:160:99:0,482,7148 0/0:175,0:175:99:0,531,7342 0/0:232,5:237:99:0,543,9952 0/1:226,22:248:99:106,0,8862 0/0:209,0:209:99:0,635,9298 0/0:216,0:216:99:0,659,9650 0/0:17,0:17:54:0,54,775 0/0:11,0:11:33:0,33,495 0/0:5,0:5:15:0,15,225 0/0:295,0:295:99:0,903,13384 0/0:499,0:499:99:0,1535,22764 0/0:261,3:264:99:0,708,11114 0/0:175,5:180:99:0,383,7498 0/0:133,0:133:99:0,403,5925 0/0:203,4:207:99:0,498,8717 0/0:16,0:16:48:0,48,688 0/0:29,0:29:87:0,87,1290 0/0:1,0:1:3:0,3,45 0/0:1224,36:1260:99:0,2521,53398
chr13 10963 . A T 2163.32 . AC=24;AF=0.112;AN=214;BaseQRankSum=3.464;ClippingRankSum=-0.001;DP=23671;ExcessHet=1.2554;FS=3.213;InbreedingCoeff=0.0251;MLEAC=22;MLEAF=0.103;MQ=43.36;MQRankSum=-28.269;QD=8.52;ReadPosRankSum=0.620;SOR=2.088 GT:AD:DP:GQ:PL 0/1:6,2:8:66:66,0,246 0/0:341,2:343:99:0,966,15485 0/1:3,4:7:99:159,0,114 0/0:301,0:301:99:0,939,13981 0/0:103,1:104:99:0,277,4689 0/0:89,3:92:99:0,151,4000 0/1:9,3:12:99:99,0,369 0/0:344,0:344:99:0,1066,15874 0/0:62,3:65:70:0,70,2745 0/0:29,2:31:9:0,9,1300 0/0:25,0:25:78:0,78,1170 0/0:144,4:148:99:0,274,6336 0/0:67,1:68:99:0,175,3133 0/0:132,2:134:99:0,331,6044 0/0:69,1:70:99:0,172,3117 0/0:138,2:140:99:0,334,6098 0/0:45,2:47:54:0,54,1980 0/0:92,3:95:99:0,154,4020 0/0:55,3:58:43:0,43,2342 0/0:918,7:925:99:0,2504,41312 0/1:1,5:6:27:207,0,27 0/1:20,1:21:24:24,0,834 0/0:1577,9:1586:99:0,4478,71774 0/0:48,2:50:64:0,64,2115 0/1:31,3:34:30:30,0,1335 0/1:15,3:18:81:81,0,621 0/1:3,4:7:99:156,0,156 0/0:281,0:281:99:0,879,13111 0/0:156,1:157:99:0,437,7055 0/0:356,2:358:99:0,1009,16185 0/0:1032,7:1039:99:0,2836,46818 0/1:11,6:17:99:216,0,486 0/0:258,2:260:99:0,712,11662 0/0:195,4:199:99:0,431,8731 0/1:4,5:9:99:198,0,153 0/1:2,2:4:75:75,0,120 0/0:297,1:298:99:0,870,13561 0/1:13,6:19:99:213,0,528 0/0:125,2:127:99:0,304,5658 0/1:5,1:6:24:24,0,249 0/1:11,6:17:99:219,0,444 0/0:153,1:154:99:0,422,6843 0/0:60,3:63:58:0,58,2610 0/0:114,1:115:99:0,310,5138 0/0:95,2:97:99:0,214,4356 0/0:138,1:139:99:0,385,6283 0/0:195,4:199:99:0,431,8766 0/0:110,0:110:99:0,340,5022 0/0:77,0:77:99:0,231,3409 0/0:82,4:86:79:0,79,3469 0/0:122,2:124:99:0,286,5372 0/0:150,1:151:99:0,425,6910 0/0:176,0:176:99:0,539,7994 0/0:144,0:144:99:0,451,6603 0/0:235,0:235:99:0,725,10800 0/0:167,1:168:99:0,470,7597 0/0:99,0:99:99:0,304,4499 0/0:1226,1:1227:99:0,3743,56098 0/0:230,2:232:99:0,629,10527 0/0:107,0:107:99:0,322,4779 0/0:147,1:148:99:0,406,6585 0/0:76,2:78:99:0,148,3355 0/0:53,0:53:99:0,160,2385 0/0:86,0:86:99:0,259,3835 0/0:95,1:96:99:0,252,4285 0/0:59,0:59:99:0,178,2647 0/0:162,3:165:99:0,365,7183 0/0:197,4:201:99:0,437,8806 0/0:203,1:204:99:0,575,9086 0/0:555,3:558:99:0,1530,25065 0/0:96,6:102:37:0,37,4050 0/0:147,3:150:99:0,329,6616 0/0:1028,6:1034:99:0,2884,46364 0/0:1458,23:1481:99:0,3507,65322 0/0:934,4:938:99:0,2693,42325 0/0:132,3:135:99:0,271,5702 0/0:338,6:344:99:0,792,15231 0/0:106,3:109:99:0,214,4938 0/1:2,3:5:99:117,0,117 0/0:570,5:575:99:0,1523,25576 1/1:0,1:1:3:45,3,0 0/0:206,1:207:99:0,581,9225 0/0:301,3:304:99:0,795,13579 0/0:232,5:237:99:0,512,10500 0/0:127,1:128:99:0,355,5873 0/0:97,2:99:99:0,217,4398 0/0:306,0:306:99:0,933,13897 0/0:210,1:211:99:0,599,9480 0/0:163,0:163:99:0,497,7403 0/0:167,3:170:99:0,394,7589 0/0:227,2:229:99:0,614,10275 0/0:248,1:249:99:0,723,11338 0/0:210,0:210:99:0,644,9567 0/0:207,1:208:99:0,590,9259 0/1:22,3:25:57:57,0,957 0/1:11,1:12:9:9,0,459 0/1:2,3:5:99:114,0,159 0/0:276,3:279:99:0,731,12569 0/0:517,2:519:99:0,1523,23880 0/0:253,2:255:99:0,699,11565 0/0:176,1:177:99:0,515,8245 0/0:135,4:139:99:0,244,5962 0/0:208,1:209:99:0,599,9495 0/1:16,5:21:99:162,0,657 0/1:34,3:37:18:18,0,1503 1/1:0,3:3:9:135,9,0 0/0:1249,6:1255:99:0,3604,57091
chr13 10965 . G C 2207.04 . AC=24;AF=0.112;AN=214;BaseQRankSum=3.428;ClippingRankSum=-0.001;DP=23618;ExcessHet=1.2554;FS=3.282;InbreedingCoeff=0.0268;MLEAC=22;MLEAF=0.103;MQ=43.37;MQRankSum=-28.440;QD=7.72;ReadPosRankSum=1.245;SOR=2.044 GT:AD:DP:GQ:PL 0/1:6,2:8:99:108,0,243 0/0:340,2:342:99:0,991,15845 0/1:3,4:7:99:159,0,114 0/0:307,0:307:99:0,966,14402 0/0:105,1:106:99:0,280,4770 0/0:91,3:94:99:0,160,4140 0/1:9,3:12:90:90,0,495 0/0:348,0:348:99:0,1111,16549 0/0:61,3:64:70:0,70,2767 0/0:30,2:32:12:0,12,1345 0/0:26,0:26:78:0,78,1170 0/0:140,4:144:99:0,281,6467 0/0:66,1:67:99:0,190,3386 0/0:132,2:134:99:0,346,6269 0/0:68,1:69:99:0,178,3207 0/0:135,2:137:99:0,352,6368 0/0:46,2:48:57:0,57,2025 0/0:91,3:94:99:0,184,4454 0/0:51,3:54:43:0,43,2342 0/0:914,7:921:99:0,2577,42428 0/1:1,5:6:99:201,0,111 0/1:20,2:22:18:18,0,918 0/0:1578,9:1587:99:0,4626,73980 0/0:49,2:51:67:0,67,2160 0/1:32,3:35:72:72,0,1332 0/1:15,3:18:81:81,0,621 0/1:4,4:8:99:156,0,156 0/0:285,0:285:99:0,891,13291 0/0:154,1:155:99:0,452,7280 0/0:354,2:356:99:0,1036,16611 0/0:1027,8:1035:99:0,2921,48085 0/1:12,6:18:99:216,0,486 0/0:255,2:257:99:0,727,11887 0/0:196,4:200:99:0,455,9091 0/1:4,5:9:99:198,0,153 0/1:3,2:5:75:75,0,120 0/0:299,1:300:99:0,876,13651 0/1:13,6:19:99:210,0,570 0/0:121,2:123:99:0,319,5890 0/1:6,1:7:24:24,0,249 0/1:11,6:17:99:216,0,486 0/0:152,1:153:99:0,386,6888 0/0:61,3:64:61:0,61,2655 0/0:112,1:113:99:0,310,5138 0/0:98,2:100:99:0,217,4402 0/0:139,1:140:99:0,400,6508 0/0:198,4:202:99:0,443,8946 0/0:111,0:111:99:0,355,5247 0/0:73,0:73:99:0,234,3454 0/0:78,4:82:82:0,82,3514 0/0:116,2:118:99:0,298,5552 0/0:154,1:155:99:0,440,7135 0/0:174,0:174:99:0,548,8129 0/0:145,0:145:99:0,448,6596 0/0:240,0:240:99:0,740,11025 0/0:169,1:170:99:0,476,7687 0/0:98,0:98:99:0,307,4564 0/0:1225,1:1226:99:0,3858,58429 0/0:234,2:236:99:0,650,10842 0/0:103,0:103:99:0,334,4959 0/0:142,1:143:99:0,419,6765 0/0:75,2:77:99:0,151,3400 0/0:53,0:53:99:0,163,2430 0/0:83,0:83:99:0,259,3835 0/0:95,1:96:99:0,265,4465 0/0:58,0:58:99:0,178,2647 0/0:160,3:163:99:0,377,7363 0/0:197,4:201:99:0,401,8859 0/0:196,1:197:99:0,599,9446 0/0:550,4:554:99:0,1560,25515 0/0:96,6:102:37:0,37,4050 0/0:148,3:151:99:0,317,7021 0/0:1019,6:1025:99:0,2969,48210 0/0:1436,23:1459:99:0,3675,67847 0/0:931,4:935:99:0,2739,43036 0/0:126,3:129:99:0,283,5882 0/0:337,6:343:99:0,816,15591 0/0:112,3:115:99:0,229,5163 0/1:3,3:6:99:114,0,159 0/0:565,5:570:99:0,1578,26422 1/1:0,1:1:3:45,3,0 0/0:203,1:204:99:0,560,9495 0/0:301,3:304:99:0,810,13817 0/0:230,5:235:99:0,515,10556 0/0:130,1:131:99:0,358,5918 0/0:96,2:98:99:0,220,4446 0/0:305,0:305:99:0,966,14392 0/0:208,1:209:99:0,611,9660 0/0:163,0:163:99:0,512,7628 0/0:169,3:172:99:0,353,7589 0/0:224,2:226:99:0,644,10732 0/0:247,1:248:99:0,717,11261 0/0:212,0:212:99:0,653,9738 0/0:204,1:205:99:0,623,9754 0/1:23,3:26:51:51,0,1041 0/1:11,1:12:6:6,0,501 0/1:4,3:7:99:114,0,159 0/0:278,3:281:99:0,738,13315 0/0:528,2:530:99:0,1620,25320 0/0:255,2:257:99:0,723,11925 0/0:182,1:183:99:0,545,8695 0/0:134,4:138:99:0,253,6097 0/0:210,1:211:99:0,629,9966 0/1:16,5:21:99:162,0,657 0/1:36,3:39:15:15,0,1545 1/1:0,3:3:9:135,9,0 0/0:1255,6:1261:99:0,3673,58711
chr13 10966 . C A 2192.10 . AC=24;AF=0.112;AN=214;BaseQRankSum=-2.219;ClippingRankSum=-0.001;DP=23767;ExcessHet=1.2554;FS=3.282;InbreedingCoeff=0.0262;MLEAC=22;MLEAF=0.103;MQ=43.37;MQRankSum=-28.444;QD=7.53;ReadPosRankSum=1.772;SOR=2.043 GT:AD:DP:GQ:PL 0/1:6,2:8:99:105,0,285 0/0:344,2:346:99:0,997,15969 0/1:3,4:7:99:159,0,114 0/0:308,0:308:99:0,966,14425 0/0:106,1:107:99:0,280,4770 0/0:91,3:94:99:0,160,4140 0/1:10,3:13:90:90,0,495 0/0:351,0:351:99:0,1117,16639 0/0:63,3:66:76:0,76,2857 0/0:31,2:33:9:0,9,1305 0/0:26,0:26:78:0,78,1170 0/0:142,4:146:99:0,272,6383 0/0:68,1:69:99:0,190,3397 0/0:131,2:133:99:0,346,6296 0/0:68,1:69:99:0,175,3175 0/0:138,2:140:99:0,349,6340 0/0:46,2:48:61:0,61,2070 0/0:96,3:99:99:0,178,4394 0/0:50,3:53:37:0,37,2284 0/0:916,7:923:99:0,2583,42552 0/1:2,5:7:99:201,0,111 0/1:20,2:22:18:18,0,918 0/0:1592,9:1601:99:0,4598,74284 0/0:50,2:52:70:0,70,2205 0/1:32,3:35:66:66,0,1416 0/1:15,3:18:81:81,0,621 0/1:4,4:8:99:153,0,198 0/0:285,0:285:99:0,885,13209 0/0:157,1:158:99:0,446,7239 0/0:358,2:360:99:0,1045,16759 0/0:1027,8:1035:99:0,2951,48599 0/1:12,6:18:99:216,0,486 0/0:256,2:258:99:0,719,11873 0/0:203,4:207:99:0,464,9226 0/1:4,5:9:99:198,0,153 0/1:3,2:5:72:72,0,162 0/0:298,1:299:99:0,888,13842 0/1:13,6:19:99:210,0,570 0/0:122,2:124:99:0,319,5918 0/1:6,1:7:24:24,0,249 0/1:11,6:17:99:216,0,486 0/0:152,1:153:99:0,404,7158 0/0:62,3:65:64:0,64,2700 0/0:112,1:113:99:0,307,5149 0/0:98,2:100:99:0,217,4402 0/0:142,1:143:99:0,397,6480 0/0:201,4:205:99:0,467,9306 0/0:115,0:115:99:0,355,5247 0/0:72,0:72:99:0,241,3580 0/0:78,4:82:88:0,88,3617 0/0:119,2:121:99:0,304,5658 0/0:157,1:158:99:0,443,7200 0/0:174,0:174:99:0,554,8231 0/0:143,0:143:99:0,442,6559 0/0:240,0:240:99:0,752,11205 0/0:165,1:166:99:0,476,7687 0/0:99,0:99:99:0,307,4581 0/0:1238,1:1239:99:0,3888,59007 0/0:233,2:235:99:0,660,11022 0/0:104,0:104:99:0,331,4925 0/0:144,1:145:99:0,419,6812 0/0:74,2:76:99:0,148,3366 0/0:53,0:53:99:0,163,2430 0/0:83,0:83:99:0,262,3897 0/0:97,1:98:99:0,268,4546 0/0:58,0:58:99:0,181,2692 0/0:160,3:163:99:0,383,7453 0/0:197,4:201:99:0,401,8883 0/0:200,1:201:99:0,602,9542 0/0:546,4:550:99:0,1575,25740 0/0:96,6:102:55:0,55,4320 0/0:150,3:153:99:0,320,7066 0/0:1019,6:1025:99:0,2990,48614 0/0:1451,23:1474:99:0,3720,68657 0/0:928,4:932:99:0,2739,43170 0/0:127,3:130:99:0,283,5897 0/0:337,6:343:99:0,840,15960 0/0:113,3:116:99:0,226,5129 0/1:3,3:6:99:114,0,159 0/0:569,5:574:99:0,1584,26532 1/1:0,1:1:3:45,3,0 0/0:204,1:205:99:0,560,9517 0/0:302,3:305:99:0,819,13986 0/0:228,5:233:99:0,519,10610 0/0:129,1:130:99:0,361,5974 0/0:97,2:99:99:0,220,4446 0/0:310,0:310:99:0,972,14502 0/0:209,1:210:99:0,614,9724 0/0:163,0:163:99:0,512,7650 0/0:168,3:171:99:0,353,7589 0/0:226,2:228:99:0,647,10811 0/0:247,1:248:99:0,726,11406 0/0:212,0:212:99:0,668,9976 0/0:208,1:209:99:0,620,9759 0/1:25,3:28:51:51,0,1041 0/1:12,1:13:6:6,0,501 0/1:4,3:7:99:114,0,159 0/0:284,3:287:99:0,750,13495 0/0:542,2:544:99:0,1650,25788 0/0:256,2:258:99:0,738,12150 0/0:184,1:185:99:0,554,8830 0/0:134,4:138:99:0,259,6187 0/0:213,1:214:99:0,635,10080 0/1:16,5:21:99:162,0,657 0/1:37,3:40:15:15,0,1545 1/1:0,3:3:9:135,9,0 0/0:1261,6:1267:99:0,3694,59113
chr13 10972 . C A,T 4323.76 . AC=7,8;AF=0.033,0.037;AN=214;BaseQRankSum=-11.572;ClippingRankSum=-0.002;DP=24246;ExcessHet=5.6384;FS=0.000;InbreedingCoeff=-0.0723;MLEAC=6,5;MLEAF=0.028,0.023;MQ=43.38;MQRankSum=-2.542;QD=2.12;ReadPosRankSum=0.100;SOR=0.773 GT:AD:DP:GQ:PL 0/2:10,0,1:11:6:6,36,441,0,405,402 0/0:332,0,13:345:99:0,1010,12779,599,12367,12329 0/0:7,0,0:7:21:0,21,280,21,280,280 0/0:309,0,0:309:99:0,932,11976,932,11976,11977 0/0:100,1,5:106:99:0,295,3503,162,3352,3344 0/0:88,0,8:96:73:0,267,3409,73,3208,3184 0/1:9,7,0:16:99:204,0,326,231,347,578 0/0:344,0,12:356:99:0,1050,13318,690,12952,12916 0/0:68,0,0:68:99:0,204,2692,204,2692,2692 0/0:32,0,1:33:63:0,96,1238,63,1204,1201 0/2:21,0,4:25:65:65,128,848,0,720,708 0/0:140,0,9:149:99:0,423,5090,170,4839,4815 0/0:79,1,1:81:99:0,230,2951,209,2926,2930 0/0:141,0,0:141:99:0,426,5361,426,5361,5361 0/0:68,0,0:68:99:0,207,2726,207,2726,2726 0/0:134,0,5:139:99:0,401,5104,266,4970,4955 0/0:48,0,0:48:99:0,144,1903,144,1903,1903 0/0:102,0,0:102:99:0,309,3846,309,3846,3846 0/0:44,0,3:47:17:0,131,1659,17,1545,1535 0/0:871,3,54:928:99:0,2504,31123,1031,29527,29481 0/2:7,0,1:8:9:9,33,362,0,330,327 0/0:24,1,0:25:33:0,33,840,71,843,882 0/0:1629,0,4:1633:99:0,4937,65234,4795,65036,65041 0/0:54,0,0:54:99:0,162,2009,162,2009,2009 0/0:40,0,1:41:90:0,120,1602,90,1571,1568 0/0:18,0,0:18:54:0,54,777,54,777,777 0/0:9,0,0:9:27:0,27,396,27,396,396 0/0:286,0,0:286:99:0,859,12144,859,12145,12145 0/0:148,5,9:162:99:0,259,5830,150,5548,5710 0/0:356,0,0:356:99:0,1086,15461,1086,15461,15461 0/0:1057,0,6:1063:99:0,3196,43427,2975,43188,43166 0/0:18,0,1:19:20:0,54,762,20,728,725 0/0:248,10,4:262:99:0,395,9967,654,9862,10246 0/0:196,0,9:205:99:0,591,6905,368,6674,6645 0/2:9,0,1:10:9:9,36,376,0,341,337 0/0:6,0,0:6:18:0,18,269,18,269,269 0/0:298,0,1:299:99:0,901,11485,874,11459,11457 0/2:16,1,4:21:73:73,79,730,0,612,642 0/0:131,0,0:131:99:0,401,5382,401,5382,5383 0/0:7,0,0:7:21:0,21,291,21,291,291 0/0:17,1,0:18:14:0,14,711,51,714,751 0/0:159,0,2:161:99:0,478,5499,440,5461,5455 0/0:68,0,0:68:99:0,205,2679,205,2679,2679 0/0:111,0,2:113:99:0,354,4835,305,4759,4753 0/0:96,6,1:103:88:0,88,3637,249,3615,3812 0/0:139,0,2:141:99:0,419,5340,340,5260,5254 0/0:215,0,4:219:99:0,647,6986,565,6897,6886 0/0:114,0,0:114:99:0,348,4650,348,4650,4651 0/2:65,0,7:72:82:82,278,2823,0,2545,2524 0/0:86,0,0:86:99:0,258,3446,258,3446,3446 ./. 0/0:157,0,0:157:99:0,483,5729,483,5729,5729 0/0:180,0,0:180:99:0,544,7168,544,7168,7169 0/0:137,1,0:138:99:0,407,5502,414,5506,5517 0/0:240,1,0:241:99:0,722,9226,736,9230,9273 0/0:157,0,9:166:99:0,473,5996,276,5792,5766 0/0:90,0,6:96:99:0,275,3542,114,3381,3363 0/2:1079,1,185:1265:99:2486,5744,43055,0,37285,36743 0/0:246,0,1:247:99:0,738,8847,706,8814,8812 0/1:62,39,0:101:99:1156,0,2168,1348,2285,3640 0/0:145,0,1:146:99:0,443,5912,416,5885,5882 0/0:78,0,2:80:99:0,245,3208,180,3125,3114 0/0:51,0,2:53:87:0,153,2026,87,1959,1953 0/0:88,0,1:89:99:0,264,3561,257,3554,3551 0/0:92,0,7:99:70:0,278,3373,70,3159,3138 0/0:57,0,0:57:99:0,174,2308,174,2308,2308 0/0:156,0,9:165:99:0,476,6424,248,6186,6158 0/0:189,0,12:201:99:0,571,7467,186,7082,7047 0/0:199,0,0:199:99:0,603,8407,603,8405,8404 0/0:560,0,4:564:99:0,1692,23820,1619,23749,23739 0/1:98,11,0:109:99:103,0,3531,404,3565,3983 0/0:153,0,5:158:99:0,468,6208,330,6063,6049 0/0:1034,0,15:1049:99:0,3116,41352,2661,40898,40856 0/0:1487,1,27:1515:99:0,4475,59580,3571,58653,58581 0/0:912,0,10:922:99:0,2751,36132,2441,35816,35788 0/0:128,5,1:134:99:0,246,4673,377,4670,4819 0/0:340,0,6:346:99:0,1031,13319,859,13134,13117 0/0:118,0,1:119:99:0,355,4560,324,4528,4526 0/0:7,0,0:7:24:0,24,348,24,348,348 0/0:537,0,40:577:99:0,1621,21598,264,20233,20113 0/0:1,0,0:1:3:0,3,45,3,45,45 0/0:203,0,0:203:99:0,618,7957,618,7957,7957 0/0:313,0,0:313:99:0,939,12405,939,12406,12406 0/0:229,0,1:230:99:0,691,9264,654,9228,9226 0/0:133,0,0:133:99:0,402,4695,402,4690,4687 0/0:96,0,5:101:99:0,288,3903,110,3725,3710 0/0:311,0,0:311:99:0,939,11108,939,11109,11109 0/0:220,0,1:221:99:0,663,8008,656,8001,7999 0/0:165,8,0:173:99:0,244,5511,501,5536,5793 0/0:169,0,0:169:99:0,518,7019,518,7019,7020 0/0:247,0,0:247:99:0,758,9999,758,9999,9999 0/0:244,0,0:244:99:0,738,10028,738,10028,10028 0/1:197,21,2:220:46:46,0,6631,611,6660,7343 0/0:205,0,1:206:99:0,619,7604,593,7578,7575 0/1:24,2,3:29:4:4,0,858,11,796,866 0/1:12,3,0:15:81:81,0,450,117,459,577 0/0:7,0,0:7:24:0,24,358,24,358,358 0/0:304,6,1:311:99:0,707,11972,924,11960,12248 0/0:537,14,6:557:99:0,1187,21553,1565,21461,21975 0/0:271,0,2:273:99:0,831,10985,796,10910,10902 0/0:181,16,0:197:5:0,5,6576,547,6625,7195 0/1:128,18,4:150:99:175,0,3915,458,3868,4423 0/0:220,0,1:221:99:0,669,8000,634,7966,7963 0/2:19,0,2:21:6:6,63,810,0,746,740 0/0:40,0,1:41:87:0,123,1681,87,1646,1643 0/0:4,0,0:4:12:0,12,180,12,180,180 0/0:1287,0,12:1299:99:0,3876,52315,3491,51875,51844
chr13 10973 . G A 2418.91 . AC=23;AF=0.107;AN=214;BaseQRankSum=5.994;ClippingRankSum=-0.001;DP=24244;ExcessHet=1.0638;FS=3.307;InbreedingCoeff=0.0397;MLEAC=21;MLEAF=0.098;MQ=43.38;MQRankSum=-29.448;QD=7.54;ReadPosRankSum=2.777;SOR=2.118 GT:AD:DP:GQ:PL 0/1:8,3:11:99:102,0,327 0/0:341,2:343:99:0,997,16064 0/1:3,4:7:99:156,0,156 0/0:305,1:306:99:0,900,14040 0/0:107,1:108:99:0,286,4860 0/0:91,3:94:99:0,154,4050 0/1:13,3:16:87:87,0,537 0/0:358,0:358:99:0,1150,17190 0/0:66,3:69:76:0,76,2880 0/0:31,2:33:9:0,9,1305 0/0:25,0:25:75:0,75,1125 0/0:146,4:150:99:0,284,6570 0/0:78,2:80:99:0,175,3780 0/0:145,2:147:99:0,380,6840 0/0:69,2:71:99:0,127,3060 0/0:136,2:138:99:0,334,6165 0/0:46,2:48:61:0,61,2070 0/0:100,3:103:99:0,193,4619 0/0:44,3:47:9:0,9,1890 0/0:913,7:920:99:0,2560,42345 0/1:3,5:8:99:243,0,108 0/1:23,2:25:15:15,0,960 0/0:1624,10:1634:99:0,4637,75735 0/0:53,2:55:85:0,85,2430 0/1:35,6:41:99:144,0,1494 0/1:15,3:18:75:75,0,705 0/1:5,4:9:99:153,0,198 0/0:285,0:285:99:0,894,13365 0/0:160,1:161:99:0,476,7695 0/0:350,2:352:99:0,1045,16785 0/0:1073,8:1081:99:0,2999,49491 0/1:13,6:19:99:213,0,528 0/0:257,2:259:99:0,717,11880 0/0:199,4:203:99:0,446,9000 0/1:5,5:10:99:237,0,192 0/1:5,2:7:69:69,0,204 0/0:303,1:304:99:0,900,14024 0/1:16,6:22:99:204,0,654 0/0:131,2:133:99:0,343,6300 0/1:7,1:8:18:18,0,333 0/1:12,6:18:99:210,0,570 0/0:160,2:162:99:0,410,7289 0/0:64,3:67:28:0,28,2745 0/0:112,1:113:99:0,316,5310 0/0:101,2:103:99:0,226,4545 0/0:140,1:141:99:0,397,6525 0/0:217,4:221:99:0,521,10125 0/0:116,0:116:99:0,358,5320 0/0:72,0:72:99:0,226,3375 0/0:82,4:86:85:0,85,3600 0/0:117,2:119:99:0,277,5310 0/0:160,1:161:99:0,446,7245 0/0:175,0:175:99:0,563,8415 0/0:137,0:137:99:0,427,6390 0/0:242,0:242:99:0,762,11385 0/0:165,1:166:99:0,467,7560 0/0:96,0:96:99:0,313,4680 0/0:1272,2:1274:99:0,3949,60127 0/0:247,2:249:99:0,672,11205 0/0:100,0:100:99:0,313,4680 0/0:143,1:144:99:0,416,6795 0/0:79,2:81:99:0,163,3600 0/0:51,0:51:99:0,160,2385 0/0:89,0:89:99:0,268,4005 0/0:99,1:100:99:0,274,4680 0/0:57,0:57:99:0,178,2655 0/0:161,3:164:99:0,386,7515 0/0:194,5:199:99:0,398,8847 0/0:197,1:198:99:0,575,9180 0/0:557,4:561:99:0,1563,25695 0/0:104,6:110:28:0,28,4500 0/0:154,4:158:99:0,323,7155 0/0:1045,7:1052:99:0,2969,48464 0/0:1494,23:1517:99:0,3745,69389 0/0:919,4:923:99:0,2719,42975 0/0:130,3:133:99:0,295,6130 0/0:330,6:336:99:0,829,15885 0/0:116,3:119:99:0,232,5220 0/1:4,3:7:99:156,0,156 0/0:569,5:574:99:0,1515,26145 1/1:0,1:1:3:45,3,0 0/0:203,2:205:99:0,545,9315 0/0:303,3:306:99:0,849,14445 0/0:223,5:228:99:0,497,10350 0/0:134,1:135:99:0,376,6210 0/0:98,2:100:99:0,226,4545 0/0:309,0:309:99:0,969,14489 0/0:223,1:224:99:0,647,10260 0/0:174,1:175:99:0,488,7875 0/0:165,4:169:99:0,344,7470 0/0:246,2:248:99:0,681,11340 0/0:241,1:242:99:0,732,11520 0/0:218,0:218:99:0,692,10336 0/0:207,1:208:99:0,626,9913 0/1:26,3:29:45:45,0,1125 0/0:15,1:16:9:0,9,720 0/1:4,3:7:99:156,0,156 0/0:303,4:307:99:0,798,14265 0/0:565,2:567:99:0,1716,26782 0/0:282,2:284:99:0,804,13185 0/0:195,1:196:99:0,581,9270 0/0:145,4:149:99:0,290,6660 0/0:220,1:221:99:0,641,10170 0/1:17,5:22:99:159,0,699 0/1:38,3:41:6:6,0,1671 1/1:0,4:4:12:180,12,0 0/0:1299,8:1307:99:0,3731,60425
chr13 10985 . C T 2253.63 . AC=22;AF=0.103;AN=214;BaseQRankSum=-0.004;ClippingRankSum=-0.001;DP=24526;ExcessHet=2.9913;FS=3.307;InbreedingCoeff=-0.0175;MLEAC=21;MLEAF=0.098;MQ=43.41;MQRankSum=-28.977;QD=6.55;ReadPosRankSum=4.980;SOR=2.003 GT:AD:DP:GQ:PL 0/1:10,2:12:93:93,0,453 0/0:346,2:348:99:0,982,15840 0/1:4,4:8:99:156,0,156 0/0:296,1:297:99:0,876,13667 0/0:110,2:112:99:0,262,5085 0/0:87,2:89:99:0,154,4050 0/1:16,2:18:36:36,0,666 0/0:364,0:364:99:0,1135,16965 0/0:61,3:64:67:0,67,2745 0/0:30,2:32:9:0,9,1305 0/0:23,0:23:75:0,75,1125 0/0:150,3:153:99:0,335,6750 0/0:85,2:87:99:0,190,3981 0/0:153,2:155:99:0,389,6975 0/0:73,2:75:99:0,136,3195 0/0:126,2:128:99:0,316,5895 0/0:46,2:48:57:0,57,2025 0/0:101,2:103:99:0,238,4709 0/1:33,3:36:21:21,0,1461 0/0:903,7:910:99:0,2493,41338 0/1:3,6:9:99:243,0,108 0/1:24,2:26:6:6,0,1086 0/0:1642,9:1651:99:0,4709,76230 0/0:59,2:61:97:0,97,2610 0/1:41,6:47:99:129,0,1704 0/1:17,2:19:33:33,0,708 0/1:6,4:10:99:150,0,240 0/0:288,0:288:99:0,888,13275 0/0:162,1:163:99:0,464,7515 0/0:354,1:355:99:0,1027,16515 0/0:1108,8:1116:99:0,3108,51120 0/1:16,6:22:99:204,0,654 0/0:261,2:263:99:0,717,11880 0/0:202,4:206:99:0,461,9225 0/1:7,5:12:99:231,0,276 0/1:7,2:9:63:63,0,288 0/0:302,1:303:99:0,903,14085 0/1:17,6:23:99:201,0,696 0/0:146,2:148:99:0,380,6840 0/1:10,1:11:12:12,0,417 0/1:15,6:21:99:207,0,612 0/0:166,2:168:99:0,431,7605 0/0:68,3:71:82:0,82,2970 0/0:116,1:117:99:0,310,5220 0/0:104,2:106:99:0,232,4635 0/0:141,1:142:99:0,394,6480 0/0:238,4:242:99:0,588,11115 0/0:111,0:111:99:0,340,5085 0/0:71,0:71:99:0,217,3240 0/0:82,3:85:82:0,82,3555 0/0:111,2:113:99:0,253,4950 0/0:166,1:167:99:0,476,7695 0/0:173,0:173:99:0,542,8100 0/0:135,0:135:99:0,412,6165 0/0:242,0:242:99:0,768,11475 0/0:167,1:168:99:0,473,7650 0/0:92,0:92:99:0,283,4230 0/0:1318,2:1320:99:0,3994,60849 0/0:252,2:254:99:0,687,11430 0/0:102,0:102:99:0,310,4635 0/0:141,1:142:99:0,401,6570 0/0:75,2:77:99:0,142,3285 0/0:50,0:50:99:0,151,2250 0/0:84,0:84:99:0,265,3960 0/0:95,1:96:99:0,253,4365 0/0:50,0:50:99:0,166,2475 0/0:167,3:170:99:0,392,7605 0/0:181,5:186:99:0,365,8370 0/0:197,1:198:99:0,569,9090 0/0:560,4:564:99:0,1572,25830 0/0:109,6:115:49:0,49,4815 0/0:165,4:169:99:0,353,7605 0/0:1047,5:1052:99:0,3002,48375 0/0:1522,23:1545:99:0,3748,69435 0/0:917,4:921:99:0,2695,42615 0/0:115,3:118:99:0,247,5445 0/0:329,6:335:99:0,775,15075 0/0:112,3:115:99:0,226,5130 0/1:4,3:7:99:156,0,156 0/0:579,6:585:99:0,1542,26550 0/1:3,0:3:33:33,0,123 0/0:200,2:202:99:0,533,9135 0/0:308,3:311:99:0,825,14085 0/0:207,5:212:99:0,446,9585 0/0:144,1:145:99:0,401,6570 0/0:97,1:98:99:0,238,4725 0/0:324,0:324:99:0,1008,15075 0/0:236,1:237:99:0,699,11025 0/0:184,1:185:99:0,542,8685 0/0:165,4:169:99:0,329,7245 0/0:256,2:258:99:0,723,11970 0/0:230,1:231:99:0,680,10755 0/0:228,0:228:99:0,701,10441 0/0:209,1:210:99:0,608,9675 0/1:28,2:30:42:42,0,1167 0/0:18,1:19:15:0,15,810 0/1:4,4:8:99:153,0,198 0/0:315,4:319:99:0,846,14985 0/0:577,2:579:99:0,1743,27187 0/0:285,2:287:99:0,807,13209 0/0:211,1:212:99:0,629,9990 0/0:157,4:161:99:0,326,7200 0/0:221,1:222:99:0,650,10305 0/1:18,5:23:99:156,0,741 0/0:46,3:49:22:0,22,2070 1/1:0,4:4:12:180,12,0 0/0:1291,8:1299:99:0,3659,59355
chr13 10990 . G C 2022.91 . AC=20;AF=0.093;AN=214;BaseQRankSum=6.045;ClippingRankSum=-0.001;DP=24209;ExcessHet=2.6417;FS=3.424;InbreedingCoeff=-0.0014;MLEAC=19;MLEAF=0.089;MQ=43.46;MQRankSum=-27.826;QD=6.24;ReadPosRankSum=6.517;SOR=1.880 GT:AD:DP:GQ:PL 0/1:14,2:16:39:39,0,624 0/0:322,1:323:99:0,973,15705 0/1:4,3:7:99:156,0,156 0/0:266,1:267:99:0,834,13050 0/0:98,2:100:99:0,235,4680 0/0:89,2:91:99:0,196,4095 0/1:16,2:18:33:33,0,708 0/0:360,0:360:99:0,1129,16875 0/0:56,3:59:58:0,58,2610 0/0:28,2:30:15:0,15,1395 0/0:24,0:24:72:0,72,1080 0/0:148,3:151:99:0,332,6705 0/0:76,2:78:99:0,166,3633 0/0:151,2:153:99:0,413,7335 0/0:71,2:73:99:0,136,3195 0/0:114,2:116:99:0,286,5445 0/0:46,2:48:57:0,57,2025 0/0:98,2:100:99:0,232,4635 0/1:31,3:34:33:33,0,1293 0/0:860,7:867:99:0,2478,41113 0/1:3,6:9:99:240,0,150 0/1:27,2:29:3:3,0,1128 0/0:1632,9:1641:99:0,4736,76050 0/0:61,2:63:99:0,106,2745 0/1:43,6:49:99:119,0,1829 0/1:19,2:21:27:27,0,792 0/1:6,4:10:99:147,0,282 0/0:281,0:281:99:0,897,13410 0/0:168,1:169:99:0,488,7875 0/0:354,1:355:99:0,1072,16605 0/0:1129,7:1136:99:0,3189,52335 0/1:17,6:23:99:198,0,738 0/0:255,2:257:99:0,711,11790 0/0:202,4:206:99:0,467,9315 0/1:7,5:12:99:186,0,321 0/1:7,2:9:63:63,0,288 0/0:295,0:295:99:0,897,13995 0/1:18,6:24:99:198,0,738 0/0:145,2:147:99:0,386,6930 0/1:10,1:11:12:12,0,417 0/1:15,3:18:99:207,0,612 0/0:157,2:159:99:0,422,7470 0/0:64,3:67:82:0,82,2970 0/0:107,1:108:99:0,310,5220 0/0:98,2:100:99:0,235,4680 0/0:140,1:141:99:0,401,6570 0/0:233,3:236:99:0,551,10575 0/0:108,0:108:99:0,340,5085 0/0:79,0:79:99:0,244,3645 0/0:84,3:87:99:0,145,3915 0/0:106,2:108:99:0,262,5085 0/0:164,1:165:99:0,485,7830 0/0:175,0:175:99:0,554,8280 0/0:134,0:134:99:0,418,6255 0/0:243,0:243:99:0,759,11340 0/0:158,1:159:99:0,479,7740 0/0:84,0:84:99:0,268,4005 0/0:1303,2:1305:99:0,3970,60489 0/0:245,2:247:99:0,672,11205 0/0:101,0:101:99:0,325,4860 0/0:138,1:139:99:0,385,6345 0/0:68,2:70:99:0,139,3240 0/0:45,0:45:99:0,157,2340 0/0:85,0:85:99:0,274,4095 0/0:97,1:98:99:0,262,4500 0/0:51,0:51:99:0,166,2475 0/0:171,3:174:99:0,407,7830 0/0:172,5:177:99:0,335,7920 0/0:200,1:201:99:0,569,9090 0/0:546,3:549:99:0,1584,26010 0/0:107,5:112:88:0,88,4815 0/0:172,3:175:99:0,359,7695 0/0:1076,5:1081:99:0,3167,50265 0/0:1533,18:1551:99:0,3872,71280 0/0:918,4:922:99:0,2704,42750 0/0:106,3:109:99:0,208,4860 0/0:318,5:323:99:0,765,14940 0/0:108,3:111:99:0,214,4950 0/1:5,3:8:99:111,0,201 0/0:573,6:579:99:0,1557,26775 0/0:3,0:3:9:0,9,135 0/0:188,2:190:99:0,521,8955 0/0:293,2:295:99:0,843,13770 0/0:200,4:204:99:0,422,9225 0/0:146,0:146:99:0,401,6570 0/0:104,1:105:99:0,280,4770 0/0:326,0:326:99:0,1032,15435 0/0:237,1:238:99:0,714,11250 0/0:193,1:194:99:0,548,8775 0/0:154,4:158:99:0,320,7110 0/0:248,2:250:99:0,714,11835 0/0:230,1:231:99:0,686,10845 0/0:210,0:210:99:0,674,10036 0/0:200,1:201:99:0,602,9585 ./. 0/0:21,1:22:21:0,21,900 0/1:5,4:9:99:153,0,198 0/0:317,3:320:99:0,831,14760 0/0:576,2:578:99:0,1734,27090 0/0:271,2:273:99:0,783,12861 0/0:211,0:211:99:0,617,9810 0/0:153,4:157:99:0,320,7110 0/0:224,1:225:99:0,665,10530 0/1:19,5:24:99:153,0,783 0/0:47,2:49:22:0,22,2070 1/1:0,4:4:12:180,12,0 0/0:1288,8:1296:99:0,3698,59940
chr13 10995 . CCGT C 1724.45 . AC=19;AF=0.089;AN=214;BaseQRankSum=6.288;ClippingRankSum=-0.001;DP=24856;ExcessHet=2.1007;FS=3.571;InbreedingCoeff=0.0064;MLEAC=18;MLEAF=0.084;MQ=43.48;MQRankSum=-27.538;QD=5.19;ReadPosRankSum=5.695;SOR=1.809 GT:AD:DP:GQ:PL 0/1:16,2:18:36:36,0,666 0/0:337,1:338:99:0,1021,15840 0/1:6,3:9:99:108,0,243 0/0:255,1:256:99:0,771,12105 0/0:104,2:106:99:0,238,4725 0/0:89,2:91:99:0,199,4140 0/1:21,2:23:18:18,0,918 0/0:374,0:374:99:0,1171,17505 0/0:57,3:60:67:0,67,2745 0/0:26,2:28:3:0,3,1215 0/0:24,0:24:72:0,72,1080 0/0:152,3:155:99:0,359,7110 0/0:82,2:84:99:0,175,3780 0/0:153,2:155:99:0,404,7200 0/0:72,2:74:99:0,145,3330 0/0:116,2:118:99:0,271,5220 0/0:46,2:48:64:0,64,2115 0/0:105,2:107:99:0,244,4799 0/1:30,3:33:36:36,0,1251 0/0:861,7:868:99:0,2397,39908 0/1:6,6:12:99:234,0,234 0/0:31,2:33:18:0,18,1440 0/0:1642,9:1651:99:0,4878,78165 0/0:65,2:67:99:0,121,2970 0/1:45,6:51:99:113,0,1913 0/1:22,2:24:18:18,0,918 0/1:11,4:15:99:135,0,450 0/0:279,0:279:99:0,885,13230 0/0:176,1:177:99:0,515,8280 0/0:362,1:363:99:0,1096,16965 0/0:1136,7:1143:99:0,3309,53550 0/1:19,6:25:99:192,0,822 0/0:260,2:262:99:0,735,12150 0/0:205,3:208:99:0,482,9540 0/1:10,5:15:99:177,0,447 0/1:9,2:11:51:51,0,456 0/0:310,0:310:99:0,963,14400 0/1:20,6:26:99:192,0,822 0/0:151,2:153:99:0,395,7065 0/1:11,1:12:6:6,0,501 0/1:18,3:21:69:69,0,789 0/0:161,2:163:99:0,416,7380 0/0:71,3:74:97:0,97,3195 0/0:106,1:107:99:0,298,5040 0/0:111,2:113:99:0,265,5130 0/0:143,1:144:99:0,407,6660 0/0:238,3:241:99:0,624,11070 0/0:105,0:105:99:0,340,5085 0/0:85,0:85:99:0,277,4140 0/0:89,3:92:99:0,157,4095 0/0:111,2:113:99:0,265,5130 0/0:163,0:163:99:0,524,7830 0/0:178,0:178:99:0,563,8415 0/0:138,0:138:99:0,439,6570 0/0:245,0:245:99:0,780,11655 0/0:165,1:166:99:0,470,7605 0/0:85,0:85:99:0,289,4320 0/0:1330,2:1332:99:0,4079,62145 0/0:260,2:262:99:0,732,12105 0/0:107,0:107:99:0,340,5085 0/0:148,1:149:99:0,416,6795 0/0:64,2:66:99:0,124,3015 0/0:50,0:50:99:0,157,2340 0/0:89,0:89:99:0,307,4590 0/0:108,1:109:99:0,292,4950 0/0:51,0:51:99:0,163,2430 0/0:173,3:176:99:0,416,7965 0/0:175,4:179:99:0,341,8010 0/0:207,1:208:99:0,608,9675 0/0:561,3:564:99:0,1635,26190 0/0:111,5:116:99:0,136,4950 0/0:180,3:183:99:0,434,8235 0/0:1111,5:1116:99:0,3369,53264 0/0:1595,18:1613:99:0,4244,73935 0/0:939,4:943:99:0,2776,43830 0/0:112,3:115:99:0,223,5085 0/0:330,5:335:99:0,823,15210 0/0:105,3:108:99:0,208,4860 0/1:7,2:9:99:105,0,285 0/0:587,6:593:99:0,1578,27090 0/0:3,0:3:12:0,12,180 0/0:186,2:188:99:0,497,8595 0/0:297,2:299:99:0,870,14175 0/0:197,4:201:99:0,464,9270 0/0:155,0:155:99:0,476,7110 0/0:113,1:114:99:0,310,5220 0/0:344,0:344:99:0,1102,16470 0/0:253,1:254:99:0,759,11925 0/0:191,1:192:99:0,572,9135 0/0:155,4:159:99:0,326,7200 0/0:265,2:267:99:0,750,12375 0/0:233,1:234:99:0,680,10755 0/0:221,0:221:99:0,701,10485 0/0:199,1:200:99:0,584,9315 0/0:28,2:30:3:0,3,1215 0/0:24,1:25:36:0,36,1125 0/1:6,4:10:99:150,0,240 0/0:337,3:340:99:0,937,15750 0/0:611,1:612:99:0,1882,28710 0/0:286,2:288:99:0,807,13230 0/0:228,0:228:99:0,731,10935 0/0:163,4:167:99:0,347,7515 0/0:234,1:235:99:0,711,11205 0/1:21,5:26:99:144,0,909 0/0:48,2:50:64:0,64,2115 1/1:0,4:4:12:180,12,0 0/0:1285,7:1292:99:0,3707,60075
chr13 10997 . G A 93.80 . AC=2;AF=9.346e-03;AN=214;BaseQRankSum=-1.927;ClippingRankSum=-0.000;DP=24200;ExcessHet=3.0307;FS=0.000;InbreedingCoeff=-0.0093;MLEAC=1;MLEAF=4.673e-03;MQ=43.49;MQRankSum=0.247;QD=4.47;ReadPosRankSum=0.374;SOR=0.553 GT:AD:DP:GQ:PL 0/0:18,0:18:54:0,54,771 0/0:324,0:324:99:0,973,12376 0/0:9,0:9:27:0,27,370 0/0:238,0:238:99:0,719,9122 0/0:97,1:98:99:0,287,3488 0/0:87,0:87:99:0,262,3244 0/0:22,0:22:66:0,66,924 0/0:363,0:363:99:0,1095,14033 0/0:58,0:58:99:0,177,2337 0/0:28,0:28:84:0,84,1084 0/0:24,0:24:72:0,72,887 0/0:154,0:154:99:0,463,5548 0/0:82,0:82:99:0,245,2968 0/0:151,0:151:99:0,457,5509 0/0:73,0:73:99:0,220,2858 0/0:113,0:113:99:0,341,4361 0/0:48,0:48:99:0,146,1765 0/0:104,0:104:99:0,312,3922 0/0:32,0:32:95:0,95,1251 0/0:848,2:850:99:0,2545,30815 0/0:12,0:12:36:0,36,522 0/0:33,0:33:99:0,99,1252 0/0:1601,4:1605:99:0,4814,64227 0/0:64,0:64:99:0,193,2330 0/0:49,0:49:99:0,150,1904 0/0:23,0:23:69:0,69,962 0/0:15,0:15:45:0,45,618 0/0:271,0:271:99:0,811,11062 0/0:172,0:172:99:0,518,7093 0/0:350,1:351:99:0,1029,14725 0/0:1118,0:1118:99:0,3365,44791 0/0:24,0:24:75:0,75,1012 0/0:254,0:254:99:0,766,10539 0/0:204,0:204:99:0,616,7355 0/0:15,0:15:45:0,45,631 0/0:11,0:11:33:0,33,478 0/0:299,8:307:99:0,692,11366 0/0:26,0:26:78:0,78,1091 0/0:146,0:146:99:0,444,6087 0/1:11,1:12:6:6,0,391 0/1:16,5:21:99:136,0,608 0/0:159,0:159:99:0,475,5646 0/0:71,0:71:99:0,216,2878 0/0:103,0:103:99:0,310,4384 0/0:109,0:109:99:0,328,4315 0/0:142,0:142:99:0,431,5679 0/0:238,0:238:99:0,712,7848 0/0:102,0:102:99:0,308,4029 0/0:81,0:81:99:0,246,3440 0/0:90,0:90:99:0,278,3605 0/0:105,0:105:99:0,317,4050 0/0:158,4:162:99:0,461,5812 0/0:168,0:168:99:0,508,6571 0/0:131,0:131:99:0,404,5505 0/0:237,0:237:99:0,722,9394 0/0:163,0:163:99:0,492,6246 0/0:83,0:83:99:0,249,3193 0/0:1305,1:1306:99:0,3926,49976 0/0:256,1:257:99:0,732,8826 0/0:104,0:104:99:0,315,4225 0/0:144,1:145:99:0,393,5537 0/0:64,0:64:99:0,195,2464 0/0:49,0:49:99:0,147,1923 0/0:87,0:87:99:0,262,3456 0/0:109,0:109:99:0,329,4031 0/0:49,0:49:99:0,152,2016 0/0:172,0:172:99:0,516,6835 0/0:174,0:174:99:0,526,6832 0/0:203,0:203:99:0,612,8308 0/0:540,1:541:99:0,1599,22605 0/0:111,1:112:99:0,327,4167 0/0:176,0:176:99:0,533,6977 0/0:1089,0:1089:99:0,3285,42099 0/0:1567,0:1567:99:0,4726,61720 0/0:921,0:921:99:0,2765,36012 0/0:109,0:109:99:0,325,4116 0/0:320,0:320:99:0,976,12565 0/0:104,0:104:99:0,317,3966 0/0:9,0:9:27:0,27,377 0/0:578,1:579:99:0,1708,23012 0/0:3,0:3:9:0,9,134 0/0:175,0:175:99:0,534,6672 0/0:290,0:290:99:0,879,11562 0/0:194,0:194:99:0,589,7567 0/0:155,0:155:99:0,467,5826 0/0:112,0:112:99:0,339,4432 0/0:330,6:336:99:0,794,11088 0/0:249,0:249:99:0,750,9057 0/0:189,0:189:99:0,568,7108 0/0:151,2:153:99:0,420,6160 0/0:260,0:260:99:0,781,10301 0/0:225,0:225:99:0,684,9037 0/0:208,0:208:99:0,628,7831 0/0:188,0:188:99:0,565,7070 0/0:30,0:30:90:0,90,1194 0/0:25,0:25:75:0,75,1015 0/0:10,0:10:30:0,30,447 0/0:333,0:333:99:0,1002,13312 0/0:594,2:596:99:0,1761,24289 0/0:284,0:284:99:0,854,10857 0/0:218,0:218:99:0,661,8655 0/0:163,0:163:99:0,492,5843 0/0:231,0:231:99:0,695,8222 0/0:26,0:26:78:0,78,1048 0/0:50,0:50:99:0,150,1909 0/0:3,0:3:12:0,12,180 0/0:1259,0:1259:99:0,3789,49392
chr13 10998 . T C 1523.99 . AC=5;AF=0.023;AN=214;BaseQRankSum=0.071;ClippingRankSum=-0.001;DP=24052;ExcessHet=3.2176;FS=0.000;InbreedingCoeff=-0.0249;MLEAC=5;MLEAF=0.023;MQ=43.49;MQRankSum=-0.464;QD=2.01;ReadPosRankSum=-0.667;SOR=1.014 GT:AD:DP:GQ:PL 0/0:18,0:18:54:0,54,761 0/0:320,0:320:99:0,965,11488 0/0:9,0:9:27:0,27,362 0/0:232,0:232:99:0,692,8185 0/0:99,0:99:99:0,294,3043 0/0:85,0:85:99:0,258,3023 0/0:22,1:23:24:0,24,838 0/0:359,0:359:99:0,1091,13223 0/0:59,0:59:99:0,178,2155 0/0:27,0:27:80:0,80,957 0/0:24,0:24:72:0,72,869 0/0:151,0:151:99:0,455,5260 0/0:81,0:81:99:0,242,2906 0/0:146,1:147:99:0,433,5068 0/0:72,0:72:99:0,222,2713 0/0:110,0:110:99:0,336,4091 0/0:47,0:47:99:0,143,1674 0/0:105,0:105:99:0,314,3799 0/0:32,0:32:94:0,94,1205 0/0:795,0:795:99:0,2396,28007 0/0:12,0:12:36:0,36,519 0/1:28,5:33:82:82,0,857 0/0:1596,2:1598:99:0,4817,62010 0/0:66,0:66:99:0,198,2274 0/0:45,1:46:99:0,128,1658 0/0:23,0:23:70:0,70,917 0/0:15,0:15:45:0,45,605 0/0:268,0:268:99:0,802,10545 0/1:159,13:172:14:14,0,5741 0/0:351,0:351:99:0,1070,14024 0/0:1109,6:1115:99:0,3146,42817 0/0:24,0:24:74:0,74,956 0/1:216,38:254:99:740,0,7763 0/0:205,0:205:99:0,616,7039 0/0:15,0:15:45:0,45,629 0/0:11,0:11:36:0,36,487 0/0:305,0:305:99:0,920,11579 0/0:25,1:26:42:0,42,981 0/0:148,0:148:99:0,450,6019 0/0:12,0:12:36:0,36,488 0/0:21,0:21:63:0,63,868 0/0:161,0:161:99:0,483,5606 0/0:71,0:71:99:0,219,2756 0/0:103,0:103:99:0,316,4354 0/1:96,14:110:99:226,0,3353 0/0:140,0:140:99:0,423,5403 0/0:236,0:236:99:0,702,7549 0/0:102,0:102:99:0,310,3729 0/0:81,0:81:99:0,247,3444 0/0:90,0:90:99:0,269,3277 0/0:103,4:107:99:0,166,3574 0/0:162,0:162:99:0,498,5969 0/0:167,0:167:99:0,501,6064 0/0:131,0:131:99:0,400,5075 0/0:239,0:239:99:0,728,9148 0/0:163,0:163:99:0,491,5998 0/0:82,1:83:99:0,225,2859 0/0:1284,3:1287:99:0,3845,47862 0/0:256,0:256:99:0,768,8581 0/0:100,2:102:99:0,235,3831 0/0:142,0:142:99:0,425,5274 0/0:64,0:64:99:0,191,2220 0/0:45,1:46:99:0,127,1540 0/0:87,1:88:99:0,251,3202 0/0:107,1:108:99:0,314,3762 0/0:48,1:49:99:0,120,1692 0/0:172,0:172:99:0,511,6339 0/0:176,0:176:99:0,530,6631 0/0:203,0:203:99:0,615,7885 0/0:539,2:541:99:0,1613,21861 0/0:111,1:112:99:0,299,3820 0/0:176,1:177:99:0,526,6516 0/0:1081,0:1081:99:0,3277,40393 0/0:1562,3:1565:99:0,4666,58662 0/0:917,1:918:99:0,2745,34112 0/0:99,9:108:57:0,57,3166 0/0:319,0:319:99:0,962,12095 0/0:104,1:105:99:0,308,3822 0/0:9,0:9:27:0,27,370 0/0:579,0:579:99:0,1746,22078 0/0:3,0:3:9:0,9,131 0/0:172,0:172:99:0,524,6264 0/0:289,0:289:99:0,878,11168 0/0:193,0:193:99:0,584,7255 0/0:154,1:155:99:0,459,5662 0/0:110,0:110:99:0,334,4213 0/0:336,0:336:99:0,1004,10943 0/0:247,1:248:99:0,732,8554 0/1:156,34:190:99:562,0,4836 0/0:156,0:156:99:0,475,6248 0/0:259,0:259:99:0,788,10125 0/0:225,2:227:99:0,665,8662 0/0:206,3:209:99:0,551,7580 0/0:189,0:189:99:0,565,6722 0/0:30,0:30:89:0,89,1080 0/0:24,1:25:35:0,35,872 0/0:10,0:10:30:0,30,444 0/0:330,0:330:99:0,987,12729 0/0:589,1:590:99:0,1799,23446 0/0:281,1:282:99:0,833,10259 0/0:212,2:214:99:0,584,7868 0/0:162,2:164:99:0,425,5589 0/0:230,0:230:99:0,688,7969 0/0:26,0:26:78:0,78,1030 0/0:50,0:50:99:0,153,1875 0/0:3,0:3:9:0,9,135 0/0:1239,2:1241:99:0,3715,47016
chr13 10999 . C A 1591.57 . AC=20;AF=0.093;AN=214;BaseQRankSum=6.405;ClippingRankSum=-0.001;DP=24210;ExcessHet=2.3750;FS=3.571;InbreedingCoeff=0.0006;MLEAC=17;MLEAF=0.079;MQ=43.49;MQRankSum=-27.051;QD=4.48;ReadPosRankSum=5.172;SOR=1.718 GT:AD:DP:GQ:PL 0/1:16,2:18:33:33,0,708 0/0:315,1:316:99:0,972,15120 0/1:6,3:9:99:105,0,285 0/0:234,1:235:99:0,699,11025 0/0:98,2:100:99:0,235,4680 0/0:84,2:86:99:0,178,3825 0/1:22,2:24:15:15,0,960 0/0:363,0:363:99:0,1141,17055 0/0:58,3:61:55:0,55,2565 0/1:24,2:26:3:3,0,1128 0/0:24,0:24:72:0,72,1080 0/0:152,3:155:99:0,359,7110 0/0:80,2:82:99:0,178,3825 0/0:150,1:151:99:0,434,7065 0/0:67,2:69:99:0,139,3240 0/0:108,2:110:99:0,253,4950 0/0:45,2:47:57:0,57,2025 0/0:103,2:105:99:0,235,4664 0/1:29,3:32:36:36,0,1251 0/0:791,5:796:99:0,2424,39143 0/1:6,6:12:99:231,0,276 0/0:30,2:32:21:0,21,1485 0/0:1608,9:1617:99:0,4640,74610 0/0:65,2:67:99:0,115,2880 0/1:41,5:46:71:71,0,1916 0/1:22,2:24:18:18,0,918 0/1:11,4:15:99:135,0,450 0/0:269,0:269:99:0,846,12645 0/0:171,1:172:99:0,488,7875 0/0:350,1:351:99:0,1057,16380 0/0:1117,7:1124:99:0,3195,51840 0/1:19,6:25:99:195,0,780 0/0:255,2:257:99:0,717,11880 0/0:205,3:208:99:0,503,9270 0/1:11,5:16:99:174,0,489 0/1:10,2:12:51:51,0,456 0/0:308,0:308:99:0,963,14400 0/1:20,6:26:99:192,0,822 0/0:148,2:150:99:0,374,6750 0/1:12,1:13:3:3,0,543 0/1:18,3:21:66:66,0,831 0/0:160,2:162:99:0,413,7335 0/0:68,3:71:88:0,88,3060 0/0:103,1:104:99:0,280,4770 0/0:110,2:112:99:0,259,5040 0/0:140,1:141:99:0,394,6480 0/0:237,3:240:99:0,609,10845 0/0:100,0:100:99:0,322,4815 0/0:86,0:86:99:0,271,4050 0/0:87,3:90:99:0,154,4050 0/0:105,2:107:99:0,241,4770 0/0:164,0:164:99:0,515,7695 0/0:170,0:170:99:0,521,7785 0/0:133,0:133:99:0,415,6210 0/0:245,0:245:99:0,744,11115 0/0:161,1:162:99:0,455,7380 0/0:85,0:85:99:0,277,4140 0/0:1291,2:1293:99:0,3983,60705 0/0:255,2:257:99:0,729,12060 0/0:103,0:103:99:0,322,4815 0/0:142,1:143:99:0,407,6660 0/0:62,2:64:99:0,106,2745 0/0:49,0:49:99:0,151,2250 0/0:90,0:90:99:0,277,4140 0/0:109,1:110:99:0,292,4950 0/0:50,0:50:99:0,154,2295 0/0:170,3:173:99:0,401,7740 0/0:171,4:175:99:0,362,7740 0/0:203,1:204:99:0,584,9315 0/0:545,3:548:99:0,1572,25245 0/0:110,5:115:99:0,130,4860 0/0:173,3:176:99:0,419,8010 0/0:1104,4:1108:99:0,3324,52004 0/0:1565,18:1583:99:0,4130,72225 0/0:913,4:917:99:0,2695,42615 0/0:105,3:108:99:0,205,4815 0/0:315,4:319:99:0,804,14355 0/0:102,3:105:99:0,202,4770 0/1:7,2:9:63:63,0,288 0/0:574,6:580:99:0,1527,26325 0/0:3,0:3:12:0,12,180 0/0:170,2:172:99:0,410,7875 0/0:289,1:290:99:0,870,13590 0/0:191,4:195:99:0,425,8685 0/0:155,0:155:99:0,479,7155 0/0:113,1:114:99:0,313,5265 0/0:343,0:343:99:0,1060,15840 0/0:255,0:255:99:0,792,11835 0/0:192,1:193:99:0,542,8685 0/0:154,4:158:99:0,308,6930 0/0:257,2:259:99:0,726,12015 0/0:224,1:225:99:0,665,10530 0/0:213,0:213:99:0,686,10260 0/0:190,1:191:99:0,548,8775 0/0:28,2:30:6:0,6,1260 0/0:25,1:26:36:0,36,1125 0/1:6,4:10:99:150,0,240 0/0:332,3:335:99:0,907,15300 0/0:594,1:595:99:0,1833,27990 0/0:277,2:279:99:0,786,12915 0/0:217,0:217:99:0,701,10485 0/0:161,4:165:99:0,332,7290 0/0:235,1:236:99:0,683,10800 0/1:22,5:27:99:144,0,909 0/0:48,2:50:64:0,64,2115 1/1:0,3:3:9:135,9,0 0/0:1238,7:1245:99:0,3604,57960
chr13 11006 . C A 948.45 . AC=16;AF=0.075;AN=214;BaseQRankSum=-4.156;ClippingRankSum=-0.001;DP=24832;ExcessHet=1.5981;FS=3.746;InbreedingCoeff=0.0403;MLEAC=13;MLEAF=0.061;MQ=43.53;MQRankSum=-24.907;QD=3.23;ReadPosRankSum=7.065;SOR=1.170 GT:AD:DP:GQ:PL 0/1:18,2:20:30:30,0,750 0/0:334,1:335:99:0,1015,15742 0/0:11,0:11:33:0,33,495 0/0:241,1:242:99:0,705,11107 0/0:111,2:113:99:0,262,5085 0/0:92,2:94:99:0,199,4140 ./. 0/0:394,1:395:99:0,1201,18540 0/0:58,3:61:52:0,52,2520 0/1:22,2:24:12:12,0,1002 0/0:22,0:22:75:0,75,1125 0/0:158,3:161:99:0,368,7245 0/0:77,2:79:99:0,160,3555 0/0:147,2:149:99:0,383,6885 0/0:76,1:77:99:0,187,3375 0/0:109,2:111:99:0,253,4950 0/0:49,1:50:99:0,112,2250 0/0:109,3:112:99:0,208,4844 0/1:27,2:29:3:3,0,1128 0/0:808,3:811:99:0,2454,38423 0/1:9,6:15:99:225,0,360 0/0:38,1:39:75:0,75,1710 0/0:1661,9:1670:99:0,4845,77654 0/0:73,2:75:99:0,145,3330 0/1:42,5:47:81:81,0,1791 0/1:22,2:24:18:18,0,918 0/1:11,3:14:93:93,0,453 0/0:276,0:276:99:0,864,12909 0/0:182,1:183:99:0,515,8280 0/0:343,1:344:99:0,1027,15930 0/0:1139,5:1144:99:0,3375,53352 0/1:23,4:27:99:99,0,954 0/0:257,1:258:99:0,747,11719 0/0:209,2:211:99:0,575,9764 0/1:14,4:18:99:126,0,576 0/1:11,1:12:6:6,0,501 0/0:322,0:322:99:0,996,14884 0/1:23,5:28:99:141,0,951 0/0:156,2:158:99:0,410,7274 0/0:17,0:17:9:0,9,720 0/0:23,1:24:27:0,27,990 0/0:168,2:170:99:0,455,7964 0/0:67,3:70:88:0,88,3060 0/0:101,1:102:99:0,268,4590 0/0:112,2:114:99:0,256,4995 0/0:138,0:138:99:0,430,6435 0/0:250,3:253:99:0,657,11565 0/0:101,0:101:99:0,319,4770 0/0:88,0:88:99:0,280,4185 0/0:93,2:95:99:0,208,4275 0/0:99,2:101:99:0,223,4500 0/0:170,0:170:99:0,539,8055 0/0:166,0:166:99:0,506,7560 0/0:127,0:127:99:0,397,5940 0/0:252,0:252:99:0,783,11696 0/0:160,1:161:99:0,461,7470 0/0:91,0:91:99:0,277,4140 0/0:1317,2:1319:99:0,4013,61119 0/0:273,2:275:99:0,777,12780 0/0:102,0:102:99:0,316,4725 0/0:134,1:135:99:0,385,6345 0/0:61,2:63:99:0,109,2790 0/0:44,0:44:99:0,138,2070 0/0:90,0:90:99:0,283,4204 0/0:102,1:103:99:0,277,4725 0/0:48,0:48:99:0,147,2205 0/0:164,3:167:99:0,374,7335 0/0:176,4:180:99:0,392,8190 0/0:194,1:195:99:0,563,9000 0/0:545,3:548:99:0,1599,25648 0/0:124,5:129:99:0,175,5535 0/0:189,3:192:99:0,455,8550 0/0:1138,4:1142:99:0,3375,52712 0/0:1551,14:1565:99:0,4251,71567 0/0:903,4:907:99:0,2680,42360 0/0:118,3:121:99:0,241,5349 0/0:312,4:316:99:0,795,14220 0/0:104,2:106:99:0,244,4815 0/1:7,2:9:63:63,0,288 0/0:577,5:582:99:0,1587,26640 0/0:5,0:5:18:0,18,270 0/0:175,3:178:99:0,422,8053 0/0:298,0:298:99:0,915,13669 0/0:193,4:197:99:0,443,8955 0/0:164,0:164:99:0,515,7695 0/0:125,1:126:99:0,352,5850 0/0:356,0:356:99:0,1099,16425 0/0:274,0:274:99:0,867,12949 0/0:209,0:209:99:0,644,9630 0/0:156,4:160:99:0,338,7376 0/0:274,3:277:99:0,729,12645 0/0:232,1:233:99:0,699,11024 0/0:225,0:225:99:0,695,10379 0/0:200,1:201:99:0,590,9396 0/0:32,0:32:99:0,99,1485 0/0:27,0:27:81:0,81,1215 0/1:6,2:8:66:66,0,246 0/0:358,3:361:99:0,985,16467 0/0:643,1:644:99:0,1955,29794 0/0:283,1:284:99:0,849,13275 0/0:245,0:245:99:0,759,11335 0/0:159,3:162:99:0,386,7504 0/0:246,1:247:99:0,732,11500 0/1:25,3:28:48:48,0,1083 0/0:52,0:52:99:0,163,2430 1/1:0,3:3:9:135,9,0 0/0:1254,7:1261:99:0,3634,58410
chr13 11011 . C A 923.91 . AC=15;AF=0.070;AN=214;BaseQRankSum=4.209;ClippingRankSum=-0.001;DP=25151;ExcessHet=5.2981;FS=3.672;InbreedingCoeff=-0.0749;MLEAC=13;MLEAF=0.061;MQ=43.48;MQRankSum=-24.831;QD=3.09;ReadPosRankSum=3.820;SOR=1.156 GT:AD:DP:GQ:PL 0/1:18,2:20:30:30,0,750 0/0:343,1:344:99:0,1024,15847 0/0:12,0:12:36:0,36,540 0/0:234,1:235:99:0,686,10828 0/0:110,2:112:99:0,253,4934 0/0:92,2:94:99:0,196,4089 0/0:28,2:30:3:0,3,1179 0/0:403,1:404:99:0,1192,18354 0/0:54,3:57:49:0,49,2466 0/1:23,2:25:12:12,0,1002 0/0:21,0:21:66:0,66,990 0/0:155,3:158:99:0,374,7301 0/0:81,2:83:99:0,172,3723 0/0:148,2:150:99:0,374,6738 0/0:73,1:74:99:0,190,3395 0/0:108,2:110:99:0,268,5150 0/0:47,1:48:99:0,109,2199 0/0:106,3:109:99:0,205,4796 0/1:26,2:28:6:6,0,1086 0/0:831,3:834:99:0,2478,38619 0/1:10,6:16:99:222,0,402 0/0:39,1:40:75:0,75,1710 0/0:1691,9:1700:99:0,4892,78071 0/0:73,2:75:99:0,151,3420 0/1:44,5:49:78:78,0,1832 0/1:20,2:22:18:18,0,918 0/1:11,3:14:93:93,0,453 0/0:276,0:276:99:0,846,12639 0/0:185,1:186:99:0,520,8334 0/0:345,1:346:99:0,1018,15765 0/0:1164,5:1169:99:0,3396,53545 0/1:24,4:28:96:96,0,996 0/0:258,1:259:99:0,744,11644 0/0:213,2:215:99:0,578,9743 0/1:15,4:19:99:120,0,660 0/1:12,1:13:6:6,0,501 0/0:328,0:328:99:0,999,14894 0/1:24,5:29:99:138,0,993 0/0:160,2:162:99:0,419,7388 0/0:18,1:19:12:0,12,765 0/0:24,1:25:30:0,30,1035 0/0:174,2:176:99:0,464,8072 0/0:71,3:74:91:0,91,3094 0/0:98,1:99:99:0,268,4554 0/0:111,2:113:99:0,259,5024 0/0:147,0:147:99:0,445,6650 0/0:257,3:260:99:0,684,11867 0/0:102,0:102:99:0,313,4677 0/0:90,0:90:99:0,277,4133 0/0:93,2:95:99:0,202,4165 0/0:95,2:97:99:0,214,4365 0/0:178,0:178:99:0,556,8286 0/0:160,0:160:99:0,491,7335 0/0:126,0:126:99:0,391,5850 0/0:249,0:249:99:0,792,11802 0/0:159,1:160:99:0,452,7319 0/0:88,0:88:99:0,283,4184 0/0:1348,2:1350:99:0,4052,61585 0/0:280,2:282:99:0,777,12739 0/0:98,0:98:99:0,307,4579 0/0:134,1:135:99:0,376,6194 0/0:61,2:63:99:0,100,2655 0/0:48,0:48:99:0,147,2198 0/0:90,0:90:99:0,283,4171 0/0:101,1:102:99:0,271,4633 0/0:46,0:46:99:0,141,2115 0/0:167,3:170:99:0,386,7507 0/0:178,4:182:99:0,398,8262 0/0:203,1:204:99:0,575,9140 0/0:554,3:557:99:0,1566,25137 0/0:131,5:136:99:0,190,5753 0/0:194,3:197:99:0,464,8679 0/0:1165,4:1169:99:0,3473,53786 0/0:1576,14:1590:99:0,4308,72146 0/0:897,4:901:99:0,2619,41365 0/0:119,3:122:99:0,244,5357 0/0:323,4:327:99:0,837,14817 0/0:99,2:101:99:0,226,4545 0/1:7,2:9:63:63,0,288 0/0:559,5:564:99:0,1532,25751 0/0:6,0:6:18:0,18,270 0/0:177,3:180:99:0,422,8036 0/0:294,0:294:99:0,912,13614 0/0:194,4:198:99:0,431,8774 0/0:163,0:163:99:0,506,7560 0/0:125,1:126:99:0,340,5661 0/0:367,0:367:99:0,1126,16780 0/0:279,0:279:99:0,860,12814 0/0:204,0:204:99:0,632,9450 0/0:161,4:165:99:0,326,7196 0/0:281,3:284:99:0,744,12858 0/0:235,1:236:99:0,689,10874 0/0:225,0:225:99:0,683,10198 0/0:210,1:211:99:0,596,9486 0/0:32,0:32:99:0,102,1517 0/0:27,0:27:81:0,81,1215 0/1:6,2:8:66:66,0,246 0/0:376,3:379:99:0,1033,17175 0/0:644,1:645:99:0,1942,29543 0/0:291,1:292:99:0,858,13355 0/0:249,0:249:99:0,759,11317 0/0:167,3:170:99:0,389,7543 0/0:260,1:261:99:0,777,12126 0/1:26,3:29:45:45,0,1118 0/0:53,0:53:99:0,163,2430 0/1:0,3:3:33:123,0,33 0/0:1263,7:1270:99:0,3595,57734
chr13 11012 . C T 928.92 . AC=15;AF=0.070;AN=214;BaseQRankSum=2.304;ClippingRankSum=-0.001;DP=25180;ExcessHet=5.2981;FS=3.672;InbreedingCoeff=-0.0751;MLEAC=13;MLEAF=0.061;MQ=43.48;MQRankSum=-24.827;QD=3.12;ReadPosRankSum=3.089;SOR=1.156 GT:AD:DP:GQ:PL 0/1:18,2:20:30:30,0,750 0/0:342,1:343:99:0,1012,15667 0/0:12,0:12:36:0,36,540 0/0:231,1:232:99:0,677,10658 0/0:112,2:114:99:0,253,4934 0/0:93,2:95:99:0,196,4089 0/0:28,2:30:3:0,3,1179 0/0:402,1:403:99:0,1183,18219 0/0:55,3:58:49:0,49,2466 0/1:23,2:25:15:15,0,960 0/0:21,0:21:66:0,66,990 0/0:159,3:162:99:0,371,7256 0/0:82,2:84:99:0,175,3766 0/0:147,2:149:99:0,368,6648 0/0:74,1:75:99:0,190,3395 0/0:112,2:114:99:0,256,4970 0/0:48,1:49:99:0,109,2199 0/0:106,3:109:99:0,202,4755 0/1:26,2:28:6:6,0,1086 0/0:836,3:839:99:0,2454,38259 0/1:10,6:16:99:222,0,402 0/0:39,1:40:75:0,75,1710 0/0:1687,9:1696:99:0,4861,77578 0/0:72,2:74:99:0,139,3240 0/1:44,5:49:78:78,0,1832 0/1:20,2:22:21:21,0,876 0/1:11,3:14:93:93,0,453 0/0:275,0:275:99:0,846,12639 0/0:183,1:184:99:0,517,8289 0/0:345,1:346:99:0,1005,15549 0/0:1166,5:1171:99:0,3362,53044 0/1:23,4:27:96:96,0,996 0/0:256,1:257:99:0,744,11644 0/0:214,2:216:99:0,578,9743 0/1:15,4:19:99:120,0,660 0/1:12,1:13:6:6,0,501 0/0:328,0:328:99:0,996,14849 0/1:24,5:29:99:138,0,993 0/0:162,2:164:99:0,413,7298 0/0:18,1:19:12:0,12,765 0/0:24,1:25:33:0,33,1080 0/0:175,2:177:99:0,461,8027 0/0:71,3:74:88:0,88,3049 0/0:99,1:100:99:0,274,4635 0/0:112,2:114:99:0,253,4934 0/0:146,0:146:99:0,448,6690 0/0:259,3:262:99:0,672,11687 0/0:102,0:102:99:0,313,4677 0/0:91,0:91:99:0,277,4133 0/0:94,2:96:99:0,199,4120 0/0:92,2:94:99:0,208,4275 0/0:178,0:178:99:0,550,8196 0/0:158,0:158:99:0,488,7290 0/0:126,0:126:99:0,394,5873 0/0:252,0:252:99:0,792,11791 0/0:161,1:162:99:0,452,7319 0/0:87,0:87:99:0,277,4094 0/0:1341,2:1343:99:0,4025,61180 0/0:279,2:281:99:0,774,12694 0/0:98,0:98:99:0,295,4399 0/0:133,1:134:99:0,370,6068 0/0:61,2:63:99:0,100,2655 0/0:46,0:46:99:0,144,2153 0/0:91,0:91:99:0,277,4081 0/0:102,1:103:99:0,265,4543 0/0:46,0:46:99:0,141,2115 0/0:166,3:169:99:0,383,7462 0/0:178,4:182:99:0,392,8172 0/0:203,1:204:99:0,575,9140 0/0:552,3:555:99:0,1562,25056 0/0:131,5:136:99:0,184,5663 0/0:194,3:197:99:0,464,8679 0/0:1179,4:1183:99:0,3446,53381 0/0:1592,14:1606:99:0,4275,71645 0/0:894,4:898:99:0,2589,40914 0/0:119,3:122:99:0,244,5339 0/0:323,4:327:99:0,828,14682 0/0:100,2:102:99:0,226,4545 0/1:7,2:9:63:63,0,288 0/0:555,5:560:99:0,1505,25346 0/0:6,0:6:18:0,18,270 0/0:178,3:181:99:0,422,8036 0/0:293,0:293:99:0,906,13524 0/0:192,4:196:99:0,425,8684 0/0:163,0:163:99:0,494,7380 0/0:125,1:126:99:0,340,5661 0/0:368,0:368:99:0,1126,16780 0/0:278,0:278:99:0,857,12769 0/0:203,0:203:99:0,626,9360 0/0:159,4:163:99:0,332,7284 0/0:283,3:286:99:0,741,12813 0/0:237,1:238:99:0,686,10829 0/0:223,0:223:99:0,677,10108 0/0:209,1:210:99:0,593,9441 0/0:33,0:33:99:0,102,1517 0/0:27,0:27:81:0,81,1215 0/1:6,2:8:66:66,0,246 0/0:376,3:379:99:0,1030,17125 0/0:640,1:641:99:0,1956,29658 0/0:293,1:294:99:0,855,13310 0/0:248,0:248:99:0,752,11227 0/0:168,3:171:99:0,383,7453 0/0:263,1:264:99:0,771,12036 0/1:26,3:29:45:45,0,1118 0/0:53,0:53:99:0,160,2385 0/1:0,3:3:33:123,0,33 0/0:1266,7:1273:99:0,3567,57294
chr13 11016 . C T 391.45 . AC=5;AF=0.023;AN=214;BaseQRankSum=-4.627;ClippingRankSum=-0.001;DP=25213;ExcessHet=3.2176;FS=0.000;InbreedingCoeff=-0.0241;MLEAC=5;MLEAF=0.023;MQ=43.46;MQRankSum=-0.346;QD=0.90;ReadPosRankSum=-0.175;SOR=0.813 GT:AD:DP:GQ:PL 0/0:20,0:20:72:0,72,1051 0/0:337,0:337:99:0,1124,16020 0/0:11,0:11:36:0,36,539 0/0:224,0:224:99:0,767,10813 0/0:114,0:114:99:0,355,5078 0/0:91,0:91:99:0,286,4116 0/0:35,0:35:99:0,114,1647 0/0:396,0:396:99:0,1264,18289 0/0:60,0:60:99:0,187,2732 0/0:26,0:26:80:0,80,1127 0/0:23,0:23:75:0,75,1082 0/0:169,0:169:99:0,521,7586 0/1:73,7:80:28:28,0,2780 0/0:146,0:146:99:0,465,6520 0/0:71,0:71:99:0,228,3222 0/0:114,0:114:99:0,354,5063 0/0:48,0:48:99:0,151,2195 0/0:114,0:114:99:0,355,4997 0/0:24,0:24:72:0,72,1026 0/0:841,0:841:99:0,2669,38273 0/0:16,0:16:48:0,48,720 0/0:39,0:39:99:0,123,1806 0/0:1638,48:1686:99:0,3536,70885 0/0:73,0:73:99:0,229,3288 0/0:49,0:49:99:0,147,2116 0/0:23,0:23:75:0,75,1097 0/0:14,0:14:42:0,42,625 0/0:271,0:271:99:0,857,12616 0/0:182,0:182:99:0,557,8227 0/0:340,0:340:99:0,1042,15375 0/0:1172,0:1172:99:0,3758,54938 0/0:25,0:25:75:0,75,1115 0/0:263,0:263:99:0,813,12013 0/0:214,0:214:99:0,680,9682 0/0:21,0:21:69:0,69,998 0/0:14,0:14:45:0,45,675 0/0:313,7:320:99:0,763,13575 0/0:29,0:29:87:0,87,1299 0/0:159,10:169:99:0,174,6847 0/0:21,0:21:63:0,63,937 0/0:27,0:27:87:0,87,1255 0/0:174,0:174:99:0,539,7771 0/0:74,0:74:99:0,223,3292 0/1:91,9:100:73:73,0,3625 0/0:117,0:117:99:0,361,5280 0/0:150,0:150:99:0,463,6777 0/0:269,0:269:99:0,834,12061 0/0:103,0:103:99:0,316,4649 0/1:78,10:88:99:146,0,3190 0/0:92,5:97:71:0,71,3821 0/0:92,0:92:99:0,298,4335 0/0:168,6:174:99:0,344,6901 0/0:167,0:167:99:0,515,7501 0/0:122,3:125:99:0,277,5219 0/0:250,9:259:99:0,519,10625 0/0:160,0:160:99:0,512,7421 0/0:87,0:87:99:0,267,3854 0/0:1343,0:1343:99:0,4300,62403 0/0:279,0:279:99:0,911,12971 0/0:98,0:98:99:0,313,4567 0/0:129,0:129:99:0,400,5831 0/0:62,0:62:99:0,190,2762 0/0:51,0:51:99:0,159,2300 0/0:92,0:92:99:0,286,4206 0/0:104,0:104:99:0,319,4674 0/0:47,0:47:99:0,150,2158 0/0:167,0:167:99:0,511,7464 0/0:181,0:181:99:0,569,8208 0/0:204,0:204:99:0,637,9263 0/0:569,0:569:99:0,1748,25764 0/0:137,0:137:99:0,421,6126 0/0:195,0:195:99:0,608,8915 0/0:1189,0:1189:99:0,3763,54863 0/0:1631,0:1631:99:0,5094,74346 0/0:895,0:895:99:0,2738,40070 0/0:127,0:127:99:0,385,5523 0/0:316,0:316:99:0,1022,14709 0/0:103,0:103:99:0,334,4789 0/0:9,0:9:33:0,33,495 0/0:562,0:562:99:0,1770,25920 0/0:7,0:7:24:0,24,357 0/0:180,0:180:99:0,596,8433 0/0:282,11:293:99:0,537,12433 0/0:195,0:195:99:0,674,9655 0/1:141,19:160:99:165,0,5305 0/0:124,0:124:99:0,400,5751 0/0:365,0:365:99:0,1157,16466 0/0:273,0:273:99:0,860,12335 0/0:205,0:205:99:0,659,9360 0/0:157,4:161:99:0,353,6790 0/0:259,17:276:99:0,316,11170 0/0:240,0:240:99:0,782,11326 0/0:226,0:226:99:0,710,10065 0/0:207,0:207:99:0,643,9108 0/0:35,0:35:99:0,111,1616 0/0:26,0:26:81:0,81,1166 0/1:5,3:8:82:82,0,201 0/0:351,25:376:99:0,224,14275 0/0:609,43:652:99:0,549,24319 0/0:303,0:303:99:0,984,14217 0/0:253,0:253:99:0,818,11732 0/0:171,0:171:99:0,542,7891 0/0:271,0:271:99:0,845,12177 0/0:31,0:31:99:0,102,1498 0/0:53,0:53:99:0,169,2493 0/0:4,0:4:15:0,15,207 0/0:1268,0:1268:99:0,4043,58927
chr13 11026 . G A 37826.15 . AC=17;AF=0.079;AN=214;BaseQRankSum=-13.952;ClippingRankSum=-0.002;DP=25348;ExcessHet=6.0044;FS=1.209;InbreedingCoeff=-0.0865;MLEAC=17;MLEAF=0.079;MQ=43.44;MQRankSum=3.167;QD=7.58;ReadPosRankSum=-5.018;SOR=0.934 GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,883 0/0:347,0:347:99:0,1044,13112 0/0:12,0:12:36:0,36,489 0/0:246,1:247:99:0,732,8987 0/0:109,0:109:99:0,327,4057 0/0:86,0:86:99:0,261,3312 0/0:38,0:38:99:0,114,1504 0/0:405,0:405:99:0,1220,15641 0/0:60,0:60:99:0,180,2310 0/0:27,0:27:81:0,81,1027 0/0:21,0:21:63:0,63,815 0/0:170,0:170:99:0,514,6044 0/1:45,17:62:99:443,0,1569 0/0:139,1:140:99:0,406,4961 0/0:63,0:63:99:0,194,2404 0/0:105,0:105:99:0,315,3910 0/0:51,0:51:99:0,153,1938 0/0:91,0:91:99:0,279,3391 0/0:20,0:20:59:0,59,703 0/0:857,1:858:99:0,2535,31179 0/0:16,0:16:48:0,48,671 0/0:39,0:39:99:0,117,1514 0/1:1154,540:1694:99:13768,0,39187 0/0:73,0:73:99:0,218,2432 0/0:43,0:43:99:0,129,1626 0/0:23,0:23:72:0,72,888 0/0:16,0:16:48:0,48,647 0/0:272,0:272:99:0,814,11139 0/0:181,0:181:99:0,544,7667 0/0:327,0:327:99:0,986,13845 0/0:1206,0:1206:99:0,3638,48053 0/0:25,0:25:75:0,75,998 0/0:257,0:257:99:0,773,10597 0/0:217,0:217:99:0,651,7579 0/0:25,0:25:75:0,75,1020 0/0:19,0:19:57:0,57,737 0/1:263,45:308:99:527,0,9192 0/0:25,0:25:78:0,78,1055 0/1:137,22:159:99:393,0,5011 0/0:22,0:22:66:0,66,885 0/0:33,0:33:99:0,99,1321 0/0:173,0:173:99:0,519,6021 0/0:74,0:74:99:0,226,3096 0/1:52,46:98:99:1452,0,1819 0/0:112,0:112:99:0,341,4528 0/0:153,0:153:99:0,462,6040 0/0:264,0:264:99:0,795,9100 0/0:103,0:103:99:0,315,4085 0/1:63,21:84:99:488,0,2316 0/1:78,16:94:99:257,0,2833 0/0:100,0:100:99:0,303,3995 0/1:120,66:186:99:1634,0,3306 0/0:160,1:161:99:0,473,6229 0/1:94,31:125:99:712,0,3269 0/1:192,63:255:99:1476,0,6238 0/0:159,0:159:99:0,481,6055 0/0:89,0:89:99:0,272,3517 0/0:1365,0:1365:99:0,4104,51936 0/0:294,0:294:99:0,881,9678 0/0:101,0:101:99:0,307,4248 0/0:124,0:124:99:0,373,4986 0/0:63,0:63:99:0,195,2582 0/0:49,0:49:99:0,147,1975 0/0:98,0:98:99:0,295,3993 0/0:112,0:112:99:0,335,4220 0/0:44,0:44:99:0,133,1817 0/0:162,0:162:99:0,490,6761 0/0:176,0:176:99:0,529,6860 0/0:196,0:196:99:0,587,8013 0/0:580,1:581:99:0,1736,24312 0/0:131,0:131:99:0,395,4996 0/0:192,0:192:99:0,577,7218 0/0:1224,1:1225:99:0,3669,47735 0/0:1640,1:1641:99:0,4915,64050 0/0:879,0:879:99:0,2644,34678 0/0:103,0:103:99:0,313,3979 0/0:335,0:335:99:0,1007,12820 0/0:100,0:100:99:0,300,3802 0/0:11,0:11:36:0,36,483 0/0:578,0:578:99:0,1737,23396 0/0:8,0:8:24:0,24,337 0/0:184,0:184:99:0,553,7083 0/1:243,38:281:99:550,0,8367 0/0:215,0:215:99:0,645,8152 0/1:95,69:164:99:1926,0,2765 0/0:124,0:124:99:0,375,4609 0/0:365,0:365:99:0,1096,12486 0/0:269,1:270:99:0,798,9137 0/0:205,0:205:99:0,618,7481 0/1:116,50:166:99:1282,0,3926 0/1:209,65:274:99:1485,0,7326 0/0:228,0:228:99:0,684,8702 0/0:198,1:199:99:0,577,7286 0/0:186,0:186:99:0,556,6842 0/0:33,0:33:99:0,101,1248 0/0:29,0:29:87:0,87,1130 0/1:5,3:8:99:108,0,231 0/1:256,111:367:99:2819,0,8794 0/1:346,318:664:99:8725,0,11499 0/0:319,0:319:99:0,955,11769 0/0:260,0:260:99:0,779,9830 0/0:173,0:173:99:0,518,6119 0/0:270,1:271:99:0,804,9415 0/0:31,0:31:96:0,96,1240 0/0:57,0:57:99:0,171,2152 0/0:5,0:5:15:0,15,207 0/0:1292,0:1292:99:0,3890,50818
chr13 11029 . C T 4123.67 . AC=11;AF=0.051;AN=214;BaseQRankSum=-11.575;ClippingRankSum=-0.002;DP=24913;ExcessHet=4.1846;FS=0.000;InbreedingCoeff=-0.0540;MLEAC=10;MLEAF=0.047;MQ=43.45;MQRankSum=1.855;QD=1.67;ReadPosRankSum=2.077;SOR=0.868 GT:AD:DP:GQ:PL 0/0:21,0:21:66:0,66,883 0/0:342,0:342:99:0,1012,11747 0/0:11,0:11:33:0,33,441 0/0:241,0:241:99:0,717,7904 0/0:103,0:103:99:0,314,3768 0/0:86,0:86:99:0,258,3323 0/0:37,0:37:99:0,111,1453 0/0:391,0:391:99:0,1166,13928 0/0:60,0:60:99:0,180,2306 0/0:27,0:27:80:0,80,1068 0/0:21,0:21:63:0,63,847 0/0:170,0:170:99:0,508,5831 0/0:48,3:51:72:0,72,1820 0/0:124,3:127:99:0,303,4462 0/0:64,0:64:99:0,198,2521 0/0:103,0:103:99:0,312,3951 0/0:48,0:48:99:0,144,1821 0/0:81,0:81:99:0,242,2976 0/0:19,0:19:57:0,57,717 0/0:798,0:798:99:0,2396,28164 0/0:16,1:17:12:0,12,614 0/0:36,0:36:99:0,107,1343 0/0:1576,78:1654:99:0,2567,58970 0/0:72,0:72:99:0,215,2347 0/0:43,0:43:99:0,129,1588 0/0:23,0:23:72:0,72,931 0/0:16,0:16:48:0,48,648 0/0:270,0:270:99:0,814,10695 0/0:180,1:181:99:0,536,7226 0/0:322,0:322:99:0,964,12836 0/0:1191,0:1191:99:0,3589,45962 0/0:25,0:25:75:0,75,973 0/0:249,0:249:99:0,753,10096 0/0:215,0:215:99:0,646,7196 0/0:24,0:24:72:0,72,970 0/0:19,0:19:57:0,57,762 0/1:243,61:304:99:769,0,8077 0/0:23,0:23:72:0,72,980 0/1:117,34:151:99:596,0,4186 0/1:17,3:20:8:8,0,610 0/0:34,0:34:99:0,102,1334 0/0:166,1:167:99:0,498,5685 0/0:77,0:77:99:0,231,2990 0/1:80,15:95:99:230,0,3095 0/0:105,4:109:99:0,217,4048 0/1:136,15:151:38:38,0,4385 0/0:250,1:251:99:0,745,8415 0/0:103,0:103:99:0,307,3660 0/1:65,19:84:99:435,0,2439 0/1:85,9:94:76:76,0,3044 0/0:100,0:100:99:0,295,3519 0/0:171,13:184:99:0,167,6043 0/0:155,1:156:99:0,438,5756 0/0:123,2:125:99:0,313,4771 0/0:247,2:249:99:0,669,9299 0/0:156,1:157:99:0,468,5772 0/0:89,0:89:99:0,269,3329 0/0:1328,0:1328:99:0,4005,49435 0/0:288,0:288:99:0,864,9307 0/0:99,0:99:99:0,300,4007 0/0:119,0:119:99:0,359,4648 0/0:63,0:63:99:0,187,2273 0/0:53,0:53:99:0,157,1817 0/0:93,0:93:99:0,279,3609 0/0:113,0:113:99:0,337,4077 0/0:45,0:45:99:0,132,1592 0/0:159,0:159:99:0,480,6341 0/0:176,0:176:99:0,525,6398 0/0:196,0:196:99:0,590,7659 0/0:579,1:580:99:0,1733,23504 0/0:125,0:125:99:0,375,4511 0/0:191,0:191:99:0,574,7074 0/0:1217,6:1223:99:0,3550,45138 0/0:1627,1:1628:99:0,4835,60842 0/0:871,4:875:99:0,2497,32953 0/0:96,0:96:99:0,289,3482 0/0:325,0:325:99:0,976,11920 0/0:97,0:97:99:0,293,3655 0/0:12,0:12:36:0,36,443 0/0:573,0:573:99:0,1718,22155 0/0:8,0:8:24:0,24,335 0/0:175,0:175:99:0,531,6353 0/1:235,45:280:99:476,0,7873 0/0:205,0:205:99:0,610,7013 0/0:145,16:161:69:0,69,5125 0/0:124,0:124:99:0,377,4541 0/0:356,0:356:99:0,1066,11902 0/0:266,0:266:99:0,795,8956 0/0:209,0:209:99:0,626,7257 0/0:149,6:155:99:0,302,5737 0/1:210,56:266:99:797,0,7132 0/0:219,0:219:99:0,670,8123 0/0:190,0:190:99:0,570,6866 0/0:182,0:182:99:0,539,6640 0/0:33,0:33:99:0,99,1262 0/0:29,0:29:86:0,86,1088 0/0:8,1:9:20:0,20,366 0/1:308,51:359:99:383,0,11036 0/1:577,93:670:99:480,0,21910 0/0:301,0:301:99:0,894,10322 0/0:253,0:253:99:0,759,9047 0/0:171,0:171:99:0,516,6063 0/0:261,0:261:99:0,790,8819 0/0:30,0:30:93:0,93,1206 0/0:56,0:56:99:0,168,2157 0/0:5,0:5:15:0,15,207 0/0:1265,0:1265:99:0,3802,47742
chr13 11046 . T G 82.08 . AC=3;AF=0.014;AN=214;BaseQRankSum=-44.114;ClippingRankSum=-0.003;DP=23877;ExcessHet=3.0719;FS=24.637;InbreedingCoeff=-0.0191;MLEAC=2;MLEAF=9.346e-03;MQ=43.54;MQRankSum=2.264;QD=0.41;ReadPosRankSum=-7.461;SOR=7.055 GT:AD:DP:GQ:PL 0/0:21,0:21:64:0,64,625 0/0:310,12:322:99:0,778,8761 0/0:14,1:15:32:0,32,292 0/0:191,14:205:99:0,444,5447 0/0:69,12:81:99:0,108,1348 0/0:62,16:78:53:0,53,1283 0/0:34,2:36:87:0,87,808 0/0:370,20:390:99:0,933,10510 0/0:35,5:40:71:0,71,910 0/0:21,3:24:29:0,29,630 0/0:14,0:14:42:0,42,393 0/0:174,0:174:99:0,507,4993 0/0:43,1:44:99:0,123,1493 0/0:76,3:79:99:0,208,2428 0/0:47,1:48:99:0,123,1021 0/0:79,10:89:99:0,143,1694 0/0:41,5:46:82:0,82,1007 0/0:69,0:69:99:0,209,2233 0/0:9,2:11:15:0,15,306 0/0:776,29:805:99:0,2053,23119 0/0:16,1:17:41:0,41,459 0/0:29,4:33:54:0,54,651 0/0:1407,81:1488:99:0,3441,42689 0/0:67,5:72:99:0,161,1724 0/0:31,2:33:73:0,73,682 0/0:17,0:17:48:0,48,408 0/0:17,1:18:42:0,42,498 0/0:255,23:278:99:0,426,7819 0/0:172,8:180:99:0,403,5958 0/0:296,32:328:99:0,458,9458 0/0:1193,27:1220:99:0,3260,35647 0/0:21,1:22:53:0,53,519 0/0:197,14:211:99:0,433,6605 0/0:195,4:199:99:0,536,5350 0/0:21,0:21:59:0,59,524 0/0:17,4:21:1:0,1,302 0/0:244,23:267:99:0,505,7001 0/0:13,0:13:36:0,36,307 0/0:143,7:150:99:0,380,4693 0/0:16,1:17:37:0,37,332 0/0:33,1:34:87:0,87,869 0/0:170,3:173:99:0,467,4490 0/0:68,1:69:99:0,181,2387 0/0:90,8:98:99:0,187,2999 0/0:109,4:113:99:0,297,3420 0/0:137,9:146:99:0,322,4349 0/0:240,3:243:99:0,680,6617 0/0:82,22:104:1:0,1,1955 0/0:76,5:81:99:0,160,2851 0/0:87,8:95:99:0,138,2785 0/0:86,10:96:99:0,141,2691 0/0:170,3:173:99:0,474,4945 0/0:136,19:155:99:0,138,3806 0/0:116,12:128:99:0,189,3231 0/0:242,8:250:99:0,651,6776 0/0:140,5:145:99:0,379,4294 0/1:72,20:92:9:9,0,1853 0/0:1233,19:1252:99:0,3471,37923 0/0:252,9:261:99:0,650,6843 0/0:88,5:93:99:0,207,3105 0/0:129,5:134:99:0,298,3975 0/1:51,10:61:20:20,0,1500 0/0:39,7:46:15:0,15,1028 0/0:84,14:98:43:0,43,2469 0/0:103,5:108:99:0,249,3022 0/1:33,13:46:99:119,0,886 0/0:129,15:144:88:0,88,3921 0/0:152,3:155:99:0,422,4737 0/0:176,6:182:99:0,459,5838 0/0:523,29:552:99:0,1126,17635 0/0:103,11:114:99:0,204,2493 0/0:152,17:169:99:0,258,3222 0/0:1156,48:1204:99:0,2931,32706 0/0:1536,67:1603:99:0,3898,44492 0/0:821,48:869:99:0,1997,23826 0/0:48,14:62:20:0,20,1207 0/0:291,11:302:99:0,773,8779 0/0:94,1:95:99:0,276,3150 0/0:10,0:10:28:0,28,290 0/0:523,6:529:99:0,1488,16525 0/0:6,1:7:9:0,9,119 0/0:166,7:173:99:0,402,5186 0/0:256,12:268:99:0,675,8275 0/0:174,15:189:99:0,401,4902 0/0:163,4:167:99:0,435,4788 0/0:132,5:137:99:0,346,3633 0/0:337,9:346:99:0,886,8827 0/0:257,13:270:99:0,657,6807 0/0:212,0:212:99:0,624,6146 0/0:126,8:134:99:0,299,3480 0/0:255,22:277:99:0,589,7409 0/0:189,20:209:99:0,384,4745 0/0:111,12:123:99:0,232,2951 0/0:111,18:129:99:0,172,3277 0/0:19,4:23:25:0,25,430 0/0:27,2:29:62:0,62,656 0/0:10,0:10:31:0,31,337 0/0:339,22:361:99:0,806,10509 0/0:611,58:669:99:0,1309,17899 0/0:283,12:295:99:0,726,7392 0/0:226,19:245:99:0,504,5695 0/0:177,2:179:99:0,501,5102 0/0:255,2:257:99:0,729,7311 0/0:22,3:25:26:0,26,511 0/0:45,2:47:99:0,115,1099 0/0:3,0:3:12:0,12,180 0/0:1174,39:1213:99:0,3107,34675
chr13 11047 . G A 150.25 . AC=8;AF=0.037;AN=214;BaseQRankSum=-2.218;ClippingRankSum=-0.001;DP=23907;ExcessHet=3.5993;FS=0.000;InbreedingCoeff=-0.0409;MLEAC=8;MLEAF=0.037;MQ=43.55;MQRankSum=-15.714;QD=1.16;ReadPosRankSum=0.602;SOR=1.753 GT:AD:DP:GQ:PL 0/0:21,0:21:69:0,69,981 0/0:319,1:320:99:0,954,14300 0/0:15,0:15:45:0,45,613 0/0:200,4:204:99:0,446,8471 0/0:81,1:82:99:0,202,3273 0/0:77,1:78:99:0,195,3297 0/0:36,1:37:69:0,69,1582 0/0:393,1:394:99:0,1158,17094 0/0:38,1:39:84:0,84,1736 0/0:22,1:23:27:0,27,945 0/0:14,1:15:1:0,1,556 0/0:173,1:174:99:0,485,7442 0/0:41,2:43:60:0,60,1859 0/0:77,2:79:99:0,150,3040 0/0:49,1:50:99:0,109,2131 0/0:90,0:90:99:0,285,3979 0/0:45,1:46:93:0,93,1867 0/0:65,1:66:99:0,177,2703 0/0:9,0:9:33:0,33,427 0/0:807,0:807:99:0,2469,35094 0/0:16,0:16:51:0,51,745 0/0:31,1:32:54:0,54,1379 0/0:1477,4:1481:99:0,4397,65810 0/0:70,0:70:99:0,222,3162 0/0:31,1:32:56:0,56,1294 0/0:17,0:17:51:0,51,730 0/1:15,2:17:36:36,0,625 0/0:280,0:280:99:0,861,12548 0/0:182,1:183:99:0,529,8318 0/0:331,0:331:99:0,1031,15075 0/0:1226,2:1228:99:0,3683,53912 0/0:21,0:21:66:0,66,950 0/0:216,0:216:99:0,668,9710 0/0:200,0:200:99:0,612,8400 0/1:18,2:20:28:28,0,722 0/0:20,1:21:18:0,18,796 0/0:267,0:267:99:0,823,11924 0/0:13,0:13:39:0,39,572 0/0:151,0:151:99:0,469,6766 0/0:18,0:18:56:0,56,752 0/1:31,3:34:28:28,0,1235 0/0:174,0:174:99:0,544,7826 0/0:70,0:70:99:0,211,3119 0/0:99,0:99:99:0,319,4680 0/0:113,0:113:99:0,352,5145 0/0:154,0:154:99:0,475,6839 0/0:241,1:242:99:0,703,10541 0/0:103,0:103:99:0,316,4646 0/0:83,0:83:99:0,268,3965 0/0:98,0:98:99:0,300,4391 0/0:94,0:94:99:0,289,4211 0/0:169,1:170:99:0,489,7504 0/0:156,0:156:99:0,476,6943 0/0:131,0:131:99:0,406,5986 0/0:250,1:251:99:0,746,11279 0/0:146,0:146:99:0,453,6426 0/0:94,1:95:99:0,250,4147 0/0:1244,3:1247:99:0,3729,54426 0/0:260,2:262:99:0,704,11062 0/0:94,0:94:99:0,310,4565 0/0:137,0:137:99:0,418,6060 0/0:63,0:63:99:0,198,2777 0/0:47,0:47:99:0,141,2073 0/0:102,0:102:99:0,316,4666 0/0:106,1:107:99:0,286,4716 0/0:44,1:45:96:0,96,1948 0/0:138,1:139:99:0,385,6137 0/0:152,1:153:99:0,440,6968 0/0:181,1:182:99:0,519,8007 0/0:558,1:559:99:0,1679,25233 0/0:111,0:111:99:0,354,5070 0/0:167,0:167:99:0,518,7113 0/0:1210,1:1211:99:0,3663,53143 0/0:1613,2:1615:99:0,4864,70650 0/0:868,1:869:99:0,2627,38008 0/0:62,1:63:99:0,165,2619 0/0:303,3:306:99:0,806,13365 0/0:100,0:100:99:0,313,4451 0/1:6,2:8:63:63,0,268 0/0:523,1:524:99:0,1559,22997 0/0:6,0:6:18:0,18,270 0/0:174,0:174:99:0,539,7843 0/0:267,0:267:99:0,817,11686 0/0:186,2:188:99:0,494,8028 0/0:167,1:168:99:0,507,7368 0/0:136,2:138:99:0,327,5740 0/0:343,1:344:99:0,1023,14786 0/0:272,0:272:99:0,826,11646 0/0:214,1:215:99:0,620,9487 0/0:134,0:134:99:0,420,6083 0/0:276,1:277:99:0,814,12279 0/0:207,2:209:99:0,554,8832 0/0:126,1:127:99:0,351,5242 0/0:128,1:129:99:0,372,5540 0/1:20,2:22:21:21,0,762 0/1:26,3:29:48:48,0,1030 0/1:9,1:10:12:12,0,362 0/0:354,2:356:99:0,1071,16236 0/0:676,2:678:99:0,2030,30246 0/0:298,1:299:99:0,863,12801 0/0:251,0:251:99:0,777,11088 0/0:178,0:178:99:0,535,7675 0/0:254,0:254:99:0,778,11002 0/0:24,1:25:33:0,33,975 0/0:47,0:47:99:0,144,1980 0/1:2,1:3:33:33,0,123 0/0:1217,7:1224:99:0,3430,52621
chr13 11067 . C T 154.97 . AC=10;AF=0.047;AN=214;BaseQRankSum=-3.660;ClippingRankSum=-0.001;DP=24956;ExcessHet=0.4840;FS=0.000;InbreedingCoeff=0.1049;MLEAC=7;MLEAF=0.033;MQ=43.64;MQRankSum=-12.608;QD=1.21;ReadPosRankSum=6.765;SOR=1.299 GT:AD:DP:GQ:PL 0/0:21,0:21:66:0,66,879 0/0:406,1:407:99:0,1179,15610 0/0:13,0:13:39:0,39,498 0/0:239,4:243:99:0,562,9637 0/0:97,1:98:99:0,252,3647 0/0:80,1:81:99:0,210,3204 0/0:41,1:42:81:0,81,1547 0/0:437,1:438:99:0,1295,18375 0/0:44,1:45:93:0,93,1656 0/0:25,1:26:36:0,36,1005 0/1:13,1:14:3:3,0,499 0/0:170,1:171:99:0,478,6286 0/0:71,1:72:99:0,136,2669 0/0:103,2:105:99:0,246,4407 0/0:48,1:49:99:0,102,1801 0/0:95,1:96:99:0,268,3648 0/0:53,1:54:99:0,135,2435 0/0:76,1:77:99:0,196,3168 0/0:10,0:10:30:0,30,401 0/0:861,33:894:99:0,1456,30888 0/0:14,0:14:48:0,48,639 0/0:33,1:34:57:0,57,1240 0/0:1554,5:1559:99:0,4549,62686 0/0:82,4:86:99:0,123,2849 0/0:24,1:25:36:0,36,957 0/0:19,0:19:57:0,57,786 0/1:12,2:14:48:48,0,458 0/0:254,0:254:99:0,772,10393 0/0:189,1:190:99:0,534,7785 0/0:306,0:306:99:0,927,12701 0/0:1256,3:1259:99:0,3679,50593 0/0:19,0:19:57:0,57,758 0/0:206,1:207:99:0,632,8716 0/0:189,0:189:99:0,573,6845 0/1:19,2:21:24:24,0,685 0/0:17,1:18:9:0,9,623 0/0:293,1:294:99:0,845,11274 0/0:13,0:13:42:0,42,543 0/0:182,0:182:99:0,555,7443 0/0:18,0:18:54:0,54,676 0/1:32,3:35:30:30,0,1111 0/0:204,0:204:99:0,620,7339 0/0:73,0:73:99:0,220,2907 0/0:95,0:95:99:0,289,4078 0/0:117,0:117:99:0,354,4815 0/0:138,0:138:99:0,413,5220 0/0:254,1:255:99:0,723,9076 0/0:104,0:104:99:0,326,4529 0/0:86,0:86:99:0,261,3558 0/0:92,0:92:99:0,276,3634 0/0:101,0:101:99:0,307,4305 0/0:182,0:182:99:0,553,7044 0/0:158,0:158:99:0,499,7101 0/0:140,0:140:99:0,426,5584 0/0:273,1:274:99:0,789,10333 0/0:162,0:162:99:0,495,6394 0/0:109,1:110:99:0,287,4190 0/0:1277,3:1280:99:0,3735,49404 0/0:271,2:273:99:0,735,9802 0/0:99,0:99:99:0,301,4088 0/0:135,0:135:99:0,407,5366 0/0:66,0:66:99:0,207,2768 0/0:51,0:51:99:0,158,2097 0/0:104,0:104:99:0,315,4147 0/0:101,1:102:99:0,264,3996 0/0:55,1:56:99:0,126,2126 0/0:141,1:142:99:0,386,5672 0/0:181,2:183:99:0,470,6993 0/0:176,2:178:99:0,492,7610 0/0:543,1:544:99:0,1618,23515 0/0:119,0:119:99:0,369,4927 0/0:171,0:171:99:0,519,6646 0/0:1238,1:1239:99:0,3728,51055 0/0:1666,2:1668:99:0,4990,68689 0/0:900,1:901:99:0,2699,37288 0/0:71,0:71:99:0,218,2597 0/0:346,3:349:99:0,915,13289 0/0:113,1:114:99:0,307,4391 0/1:6,2:8:63:63,0,209 0/0:521,1:522:99:0,1562,22408 0/0:7,0:7:21:0,21,282 0/0:207,0:207:99:0,623,8365 0/0:278,0:278:99:0,843,11125 0/0:194,2:196:99:0,499,7598 0/0:176,0:176:99:0,533,7268 0/0:144,2:146:99:0,350,4977 0/0:357,1:358:99:0,1071,12610 0/0:286,0:286:99:0,868,10433 0/0:221,1:222:99:0,634,8359 0/0:155,0:155:99:0,464,6003 0/0:279,1:280:99:0,806,11275 0/0:221,2:223:99:0,588,8611 0/0:144,1:145:99:0,410,5897 0/0:151,1:152:99:0,420,5779 0/1:21,2:23:21:21,0,706 0/1:24,3:27:51:51,0,884 0/1:11,1:12:6:6,0,458 0/0:382,1:383:99:0,1137,15805 0/0:715,2:717:99:0,2133,30236 0/0:323,1:324:99:0,934,12466 0/0:294,0:294:99:0,898,11564 0/0:185,0:185:99:0,556,6936 0/0:243,0:243:99:0,733,9009 0/0:19,1:20:15:0,15,712 0/0:48,0:48:99:0,147,1952 1/1:0,1:1:3:45,3,0 0/0:1225,7:1232:99:0,3437,49133
chr13 11068 . G C 284.56 . AC=12;AF=0.056;AN=214;BaseQRankSum=-0.464;ClippingRankSum=-0.001;DP=24869;ExcessHet=1.0103;FS=0.000;InbreedingCoeff=0.0506;MLEAC=9;MLEAF=0.042;MQ=43.66;MQRankSum=-22.443;QD=1.70;ReadPosRankSum=8.812;SOR=1.042 GT:AD:DP:GQ:PL 0/0:21,0:21:69:0,69,1029 0/0:414,1:415:99:0,1261,19289 ./. 0/0:232,6:238:99:0,506,10981 0/0:99,1:100:99:0,283,4799 0/0:80,2:82:99:0,184,3904 0/0:40,1:41:87:0,87,1874 0/0:437,2:439:99:0,1294,20411 0/0:43,2:45:57:0,57,2011 0/1:24,2:26:3:3,0,1128 0/1:13,2:15:45:45,0,540 0/0:172,1:173:99:0,491,7886 0/0:66,2:68:94:0,94,3043 0/0:107,2:109:99:0,262,5058 0/0:48,1:49:99:0,112,2237 0/0:96,1:97:99:0,265,4518 0/0:56,1:57:99:0,133,2565 0/0:78,1:79:99:0,201,3565 0/0:11,0:11:36:0,36,540 0/0:895,1:896:99:0,2760,41696 0/0:12,1:13:3:0,3,597 0/0:33,1:34:63:0,63,1530 0/0:1537,12:1549:99:0,4391,72323 0/0:84,2:86:99:0,181,3859 0/0:24,1:25:36:0,36,1116 0/0:19,0:19:57:0,57,855 0/1:12,2:14:48:48,0,498 0/0:257,0:257:99:0,807,12042 0/0:197,2:199:99:0,530,9032 0/0:302,1:303:99:0,915,14242 0/0:1254,7:1261:99:0,3614,58260 0/0:19,0:19:57:0,57,855 0/0:209,0:209:99:0,662,9870 0/0:189,1:190:99:0,551,8785 0/1:18,2:20:24:24,0,821 0/0:17,1:18:12:0,12,765 0/0:288,2:290:99:0,831,13526 ./. 0/0:184,0:184:99:0,578,8605 0/0:17,0:17:57:0,57,855 0/1:31,3:34:24:24,0,1419 0/0:199,1:200:99:0,593,9433 0/0:72,0:72:99:0,226,3361 0/0:96,0:96:99:0,295,4410 0/0:117,1:118:99:0,316,5310 0/0:141,1:142:99:0,388,6382 0/0:247,1:248:99:0,750,11713 0/0:105,0:105:99:0,305,4921 0/0:84,0:84:99:0,271,4028 0/0:90,0:90:99:0,280,4183 0/0:99,1:100:99:0,271,4631 0/0:182,1:183:99:0,515,8280 0/0:163,0:163:99:0,503,7515 0/0:142,0:142:99:0,433,6480 0/0:266,2:268:99:0,773,12660 0/0:166,1:167:99:0,464,7511 0/0:110,2:112:99:0,262,5074 0/0:1254,5:1259:99:0,3796,59701 0/0:269,3:272:99:0,726,12518 0/0:99,0:99:99:0,301,4500 0/0:134,2:136:99:0,343,6292 0/0:65,0:65:99:0,216,3239 0/0:50,1:51:99:0,115,2295 0/0:102,0:102:99:0,322,4815 0/0:100,1:101:99:0,268,4590 0/0:57,2:59:97:0,97,2610 0/0:141,2:143:99:0,356,6480 0/0:176,2:178:99:0,456,8302 0/0:176,1:177:99:0,489,8238 0/0:546,1:547:99:0,1661,25357 0/0:118,1:119:99:0,299,5388 0/0:168,0:168:99:0,548,8179 0/0:1220,8:1228:99:0,3518,57393 0/0:1654,11:1665:99:0,4759,77501 0/0:901,2:903:99:0,2727,41856 0/0:74,0:74:99:0,238,3521 0/0:339,3:342:99:0,945,15845 0/0:114,1:115:99:0,316,5272 0/1:4,3:7:99:108,0,231 0/0:520,4:524:99:0,1479,24381 0/1:5,1:6:24:24,0,249 0/0:206,0:206:99:0,647,9669 0/0:267,1:268:99:0,816,12767 0/0:188,3:191:99:0,467,8693 0/0:176,0:176:99:0,551,8235 0/0:144,2:146:99:0,373,6704 0/0:354,2:356:99:0,1026,16431 0/0:284,0:284:99:0,894,13325 0/0:218,1:219:99:0,647,10220 0/0:155,1:156:99:0,446,7237 0/0:275,1:276:99:0,837,13083 0/0:220,5:225:99:0,476,10035 0/0:142,2:144:99:0,379,6779 0/0:151,2:153:99:0,416,7333 0/1:20,3:23:63:63,0,873 0/1:25,3:28:51:51,0,1041 0/1:11,1:12:6:6,0,496 0/0:376,4:380:99:0,1041,17803 0/0:707,2:709:99:0,2137,33770 0/0:328,1:329:99:0,969,15075 0/0:296,0:296:99:0,930,13853 0/0:183,0:183:99:0,580,8623 0/0:238,0:238:99:0,774,11547 0/0:18,1:19:15:0,15,792 0/0:46,0:46:99:0,151,2242 1/1:0,1:1:3:45,3,0 0/0:1232,10:1242:99:0,3478,57694
chr13 11071 . G C 305.55 . AC=15;AF=0.070;AN=214;BaseQRankSum=2.236;ClippingRankSum=-0.001;DP=25192;ExcessHet=1.2080;FS=0.000;InbreedingCoeff=0.0384;MLEAC=10;MLEAF=0.047;MQ=43.68;MQRankSum=-22.461;QD=1.80;ReadPosRankSum=7.704;SOR=1.046 GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,990 0/0:427,1:428:99:0,1298,19964 0/1:13,1:14:3:3,0,543 0/0:239,6:245:99:0,540,11565 0/0:101,1:102:99:0,286,4860 0/0:87,2:89:99:0,193,4050 0/0:42,1:43:87:0,87,1890 0/0:439,2:441:99:0,1283,20337 0/0:46,2:48:61:0,61,2056 0/1:27,2:29:3:3,0,1128 0/1:13,2:15:45:45,0,540 0/0:174,1:175:99:0,500,8055 0/0:59,2:61:99:0,112,2835 0/0:110,2:112:99:0,262,5079 0/0:48,1:49:99:0,115,2295 0/0:107,1:108:99:0,286,4853 0/0:58,1:59:99:0,139,2655 0/0:75,1:76:99:0,192,3426 0/0:13,0:13:42:0,42,630 0/0:906,1:907:99:0,2754,41734 0/1:12,1:13:6:6,0,501 0/0:34,1:35:63:0,63,1530 0/0:1564,11:1575:99:0,4397,72721 0/0:85,2:87:99:0,181,3870 0/0:22,1:23:30:0,30,1035 0/0:19,0:19:60:0,60,900 0/1:11,2:13:51:51,0,456 0/0:263,0:263:99:0,828,12375 0/0:195,2:197:99:0,533,9135 0/0:306,1:307:99:0,914,14263 0/0:1256,7:1263:99:0,3643,58537 0/0:20,0:20:63:0,63,945 0/0:212,0:212:99:0,680,10170 0/0:192,1:193:99:0,545,8730 0/1:18,2:20:30:30,0,750 0/0:17,1:18:12:0,12,765 0/0:293,2:295:99:0,831,13578 0/1:13,1:14:3:3,0,543 0/0:187,0:187:99:0,584,8730 0/0:18,0:18:54:0,54,810 0/1:33,3:36:24:24,0,1419 0/0:201,1:202:99:0,596,9458 0/0:72,0:72:99:0,220,3285 0/0:98,0:98:99:0,307,4590 0/0:112,1:113:99:0,313,5265 0/0:147,1:148:99:0,419,6840 0/0:252,1:253:99:0,750,11790 0/0:109,0:109:99:0,349,5220 0/0:83,0:83:99:0,265,3939 0/0:86,0:86:99:0,274,4095 0/0:101,1:102:99:0,271,4635 0/0:184,1:185:99:0,533,8550 0/0:158,0:158:99:0,509,7605 0/0:143,0:143:99:0,452,6750 0/0:266,2:268:99:0,762,12555 0/0:167,1:168:99:0,494,7965 0/0:113,2:115:99:0,259,5029 0/0:1272,5:1277:99:0,3824,59977 0/0:268,3:271:99:0,711,12375 0/0:99,0:99:99:0,304,4521 0/0:135,2:137:99:0,334,6165 0/0:70,0:70:99:0,220,3284 0/0:53,1:54:99:0,127,2467 0/0:102,0:102:99:0,319,4770 0/0:100,1:101:99:0,274,4680 0/0:59,2:61:94:0,94,2565 0/0:146,2:148:99:0,374,6750 0/0:176,2:178:99:0,482,8370 0/0:184,1:185:99:0,530,8505 0/0:544,1:545:99:0,1671,25554 0/0:116,1:117:99:0,334,5580 0/0:177,0:177:99:0,551,8235 0/0:1242,8:1250:99:0,3496,56907 0/0:1658,11:1669:99:0,4755,77433 0/0:903,2:905:99:0,2724,41879 0/0:76,0:76:99:0,244,3622 0/0:338,3:341:99:0,955,16020 0/0:116,1:117:99:0,331,5535 0/1:4,3:7:99:114,0,159 0/0:534,4:538:99:0,1485,24525 0/1:5,1:6:27:27,0,207 0/0:209,0:209:99:0,662,9900 0/0:270,1:271:99:0,798,12510 0/0:196,3:199:99:0,472,8859 0/0:179,0:179:99:0,563,8414 0/0:152,2:154:99:0,383,6885 0/0:356,2:358:99:0,1030,16560 0/0:281,0:281:99:0,882,13185 0/0:219,1:220:99:0,635,10080 0/0:158,1:159:99:0,449,7290 0/0:274,1:275:99:0,825,12915 0/0:221,5:226:99:0,494,10305 0/0:154,2:156:99:0,401,7148 0/0:166,2:168:99:0,449,7804 0/1:21,3:24:63:63,0,873 0/1:23,3:26:51:51,0,1041 0/1:11,1:12:9:9,0,459 0/0:383,4:387:99:0,1042,17884 0/0:722,2:724:99:0,2180,33750 0/0:326,1:327:99:0,984,15286 0/0:298,0:298:99:0,936,13995 0/0:187,0:187:99:0,581,8659 0/0:242,0:242:99:0,750,11205 0/0:18,1:19:12:0,12,765 0/0:47,0:47:99:0,147,2205 1/1:0,1:1:3:45,3,0 0/0:1256,10:1266:99:0,3481,57869
chr13 11077 . G A 3686.14 . AC=21;AF=0.098;AN=214;BaseQRankSum=-0.812;ClippingRankSum=-0.002;DP=25508;ExcessHet=2.6715;FS=0.000;InbreedingCoeff=-0.0264;MLEAC=17;MLEAF=0.079;MQ=43.72;MQRankSum=-7.002;QD=1.93;ReadPosRankSum=2.705;SOR=0.665 GT:AD:DP:GQ:PL 0/1:21,2:23:10:10,0,697 0/0:409,14:423:99:0,718,15145 0/0:14,0:14:44:0,44,474 0/0:262,5:267:99:0,617,11008 0/1:98,13:111:99:184,0,3087 0/1:83,10:93:99:142,0,2620 0/0:40,1:41:81:0,81,1500 0/0:429,8:437:99:0,1035,18107 0/0:46,2:48:58:0,58,1633 0/1:26,4:30:88:88,0,899 0/1:10,4:14:99:126,0,403 0/0:175,5:180:99:0,346,6048 0/0:59,1:60:99:0,134,2117 0/0:106,2:108:99:0,243,4432 0/0:46,1:47:96:0,96,1665 0/0:102,3:105:99:0,208,3816 0/0:61,1:62:99:0,147,2648 0/0:72,1:73:99:0,175,2924 0/0:15,1:16:7:0,7,524 0/0:859,55:914:99:0,735,30341 0/1:12,1:13:1:1,0,398 0/0:31,1:32:55:0,55,1070 0/0:1570,13:1583:99:0,4302,63578 0/0:91,0:91:99:0,277,3571 0/1:23,2:25:7:7,0,796 0/0:21,0:21:66:0,66,826 0/1:12,2:14:48:48,0,417 0/0:271,0:271:99:0,819,11167 0/0:189,12:201:99:0,108,7358 0/0:314,0:314:99:0,968,13096 0/0:1232,12:1244:99:0,3298,49267 0/0:21,0:21:63:0,63,706 0/0:211,8:219:99:0,344,8435 0/0:189,5:194:99:0,384,6545 0/1:17,3:20:69:69,0,517 0/0:17,1:18:9:0,9,532 0/0:297,1:298:99:0,862,11563 0/1:10,1:11:2:2,0,335 0/0:181,0:181:99:0,552,7340 0/0:17,0:17:51:0,51,634 0/1:35,3:38:18:18,0,1234 0/0:198,11:209:99:0,278,6860 0/0:68,0:68:99:0,210,2858 0/0:100,0:100:99:0,313,4293 0/0:115,0:115:99:0,350,4593 0/0:145,1:146:99:0,408,5564 0/0:239,11:250:99:0,377,7942 0/0:112,0:112:99:0,346,5005 0/0:83,2:85:99:0,173,3367 0/0:90,0:90:99:0,273,3614 0/0:107,0:107:99:0,325,4582 0/0:184,0:184:99:0,564,7205 0/0:158,0:158:99:0,487,7004 0/0:146,0:146:99:0,449,5763 0/0:278,1:279:99:0,795,10658 0/0:159,8:167:99:0,194,5939 0/0:107,9:116:18:0,18,3739 0/1:1109,179:1288:99:2631,0,38205 0/0:280,3:283:99:0,731,10098 0/0:99,0:99:99:0,298,4079 0/0:142,0:142:99:0,426,5666 0/0:68,2:70:99:0,131,2683 0/0:55,2:57:96:0,96,2224 0/0:104,1:105:99:0,277,4083 0/0:96,7:103:42:0,42,3396 0/0:61,1:62:99:0,140,2329 0/0:141,9:150:99:0,109,5262 0/1:161,21:182:99:197,0,5870 0/0:181,1:182:99:0,516,7676 0/0:554,9:563:99:0,1340,23527 0/0:129,0:129:99:0,390,5248 0/0:174,9:183:99:0,236,6156 0/0:1259,26:1285:99:0,2930,50734 0/0:1638,33:1671:99:0,3917,67048 0/0:882,19:901:99:0,1977,35481 0/0:79,2:81:99:0,167,2827 0/0:343,8:351:99:0,684,12860 0/0:110,0:110:99:0,333,4369 0/1:5,2:7:69:69,0,158 0/0:512,26:538:99:0,601,20880 0/1:5,1:6:21:21,0,148 0/0:221,0:221:99:0,691,9324 0/0:268,0:268:99:0,819,10859 0/0:196,4:200:99:0,438,7622 0/0:176,0:176:99:0,547,7353 0/0:142,9:151:99:0,114,4573 0/0:358,0:358:99:0,1076,12712 0/0:286,0:286:99:0,863,10319 0/0:216,1:217:99:0,619,8252 0/0:154,0:154:99:0,470,6181 0/0:275,1:276:99:0,798,11195 0/0:234,2:236:99:0,626,9013 0/0:156,1:157:99:0,430,6333 0/0:166,4:170:99:0,350,6177 0/1:21,2:23:22:22,0,674 0/1:21,3:24:63:63,0,732 0/1:12,1:13:6:6,0,419 0/0:399,1:400:99:0,1176,16196 0/0:747,1:748:99:0,2256,31114 0/0:324,1:325:99:0,942,12485 0/0:304,3:307:99:0,878,11800 0/0:178,5:183:99:0,390,6463 0/0:252,1:253:99:0,726,9157 0/1:13,5:18:99:157,0,417 0/0:45,3:48:26:0,26,1724 1/1:0,1:1:3:45,3,0 0/0:1243,29:1272:99:0,2628,48353
chr13 11083 . C G 2743.81 . AC=3;AF=0.014;AN=214;BaseQRankSum=3.298;ClippingRankSum=-0.001;DP=25971;ExcessHet=3.0719;FS=0.000;InbreedingCoeff=-0.0159;MLEAC=3;MLEAF=0.014;MQ=43.76;MQRankSum=1.040;QD=2.11;ReadPosRankSum=0.061;SOR=0.825 GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,824 0/0:443,0:443:99:0,1339,16935 0/0:16,0:16:51:0,51,549 0/0:285,0:285:99:0,871,11977 0/0:116,0:116:99:0,344,4138 0/0:103,0:103:99:0,310,3941 0/0:44,0:44:99:0,132,1694 0/0:450,0:450:99:0,1375,19140 0/0:54,0:54:99:0,162,2007 0/0:34,0:34:99:0,105,1403 0/0:15,0:15:48:0,48,682 0/0:180,0:180:99:0,544,6454 0/0:57,3:60:49:0,49,2120 0/0:117,0:117:99:0,354,5018 0/0:49,0:49:99:0,145,1788 0/0:112,0:112:99:0,336,4283 0/0:63,0:63:99:0,191,2762 0/0:73,0:73:99:0,220,3102 0/0:18,0:18:53:0,53,661 0/0:940,2:942:99:0,2809,34955 0/0:14,0:14:42:0,42,499 0/0:36,0:36:99:0,111,1334 0/0:1555,48:1603:99:0,3041,60194 0/0:96,0:96:99:0,288,3665 0/0:25,0:25:75:0,75,976 0/0:22,0:22:66:0,66,886 0/0:15,0:15:45:0,45,571 0/0:268,0:268:99:0,822,11326 0/0:208,1:209:99:0,625,8591 0/0:311,2:313:99:0,921,12927 0/0:1249,3:1252:99:0,3698,50549 0/0:21,0:21:63:0,63,745 0/0:219,0:219:99:0,682,9431 0/0:191,0:191:99:0,575,6799 0/0:20,0:20:60:0,60,699 0/0:18,0:18:54:0,54,621 0/0:282,10:292:99:0,505,10221 0/0:13,0:13:39:0,39,524 0/0:167,9:176:99:0,146,6222 0/0:17,0:17:51:0,51,619 0/0:42,0:42:99:0,128,1567 0/0:208,0:208:99:0,630,7702 0/0:69,0:69:99:0,210,2838 0/1:90,13:103:99:148,0,3325 0/0:119,0:119:99:0,365,4835 0/0:149,1:150:99:0,444,5623 0/0:237,0:237:99:0,715,8156 0/0:117,1:118:99:0,353,5239 0/0:80,5:85:97:0,97,3083 0/0:80,6:86:29:0,29,2862 0/0:113,0:113:99:0,342,4719 0/0:170,9:179:99:0,329,6378 0/0:168,0:168:99:0,515,7456 0/0:149,5:154:99:0,260,5473 0/0:275,5:280:99:0,681,10424 0/0:174,0:174:99:0,525,6847 0/0:124,0:124:99:0,374,4803 0/0:1317,0:1317:99:0,3990,50924 0/0:283,0:283:99:0,850,10464 0/0:104,0:104:99:0,325,4475 0/0:137,0:137:99:0,420,5564 0/0:73,0:73:99:0,218,2869 0/0:60,0:60:99:0,180,2388 0/0:109,0:109:99:0,329,4350 0/0:108,0:108:99:0,325,4202 0/0:66,0:66:99:0,196,2533 0/0:145,0:145:99:0,443,5855 0/0:188,0:188:99:0,574,7664 0/0:178,0:178:99:0,536,7532 0/0:572,0:572:99:0,1759,25214 0/0:130,0:130:99:0,391,5202 0/0:193,0:193:99:0,587,7305 0/0:1312,0:1312:99:0,4009,54145 0/0:1685,0:1685:99:0,5143,70025 0/0:906,0:906:99:0,2762,37311 0/0:90,0:90:99:0,276,3488 0/0:367,0:367:99:0,1108,14255 0/0:112,0:112:99:0,338,4403 0/0:8,0:8:24:0,24,285 0/0:538,0:538:99:0,1636,22899 0/0:6,0:6:18:0,18,184 0/0:222,0:222:99:0,682,9218 0/0:258,12:270:99:0,414,9628 0/0:206,0:206:99:0,616,7819 0/0:166,9:175:99:0,342,6672 0/0:152,0:152:99:0,457,5319 0/0:365,0:365:99:0,1098,12822 0/0:290,0:290:99:0,873,10341 0/0:217,0:217:99:0,667,8306 0/0:152,0:152:99:0,463,5892 0/0:271,13:284:99:0,379,10444 0/0:244,0:244:99:0,739,9526 0/0:178,0:178:99:0,542,7373 0/0:178,1:179:99:0,526,6768 0/0:25,0:25:74:0,74,925 0/0:24,0:24:72:0,72,922 0/0:12,0:12:39:0,39,498 0/1:347,59:406:99:936,0,12181 0/1:670,121:791:99:1735,0,23525 0/0:337,0:337:99:0,1015,12740 0/0:317,0:317:99:0,958,12225 0/0:182,0:182:99:0,556,6862 0/0:254,0:254:99:0,770,9464 0/0:18,0:18:54:0,54,704 0/0:48,0:48:99:0,150,2033 0/0:1,0:1:3:0,3,45 0/0:1270,0:1270:99:0,3845,50878
chr13 11088 . G A 148.90 . AC=9;AF=0.042;AN=214;BaseQRankSum=1.488;ClippingRankSum=-0.000;DP=26287;ExcessHet=0.3831;FS=0.000;InbreedingCoeff=0.1274;MLEAC=5;MLEAF=0.023;MQ=43.77;MQRankSum=-15.441;QD=1.10;ReadPosRankSum=1.855;SOR=1.730 GT:AD:DP:GQ:PL 0/0:21,0:21:63:0,63,945 0/0:462,1:463:99:0,1370,21015 0/0:17,0:17:51:0,51,765 0/0:286,3:289:99:0,762,13058 0/0:121,1:122:99:0,340,5607 0/0:104,1:105:99:0,286,4808 0/0:43,1:44:87:0,87,1886 0/0:459,1:460:99:0,1391,21248 0/0:58,1:59:99:0,145,2707 0/0:37,1:38:75:0,75,1693 0/0:16,1:17:9:0,9,719 0/0:185,1:186:99:0,533,8520 0/0:65,0:65:99:0,202,2924 0/0:114,2:116:99:0,283,5344 0/0:49,1:50:99:0,109,2205 0/0:115,0:115:99:0,364,5398 0/0:62,1:63:99:0,151,2829 0/0:71,0:71:99:0,184,3283 0/0:24,0:24:72:0,72,1080 0/0:967,0:967:99:0,2988,44326 0/0:15,0:15:45:0,45,675 0/0:35,1:36:63:0,63,1530 0/0:1643,4:1647:99:0,4904,75369 0/0:96,0:96:99:0,313,4604 0/0:24,1:25:30:0,30,1035 0/0:23,0:23:72:0,72,1067 0/1:12,2:14:48:48,0,498 0/0:270,0:270:99:0,840,12476 0/0:209,1:210:99:0,605,9600 0/0:313,0:313:99:0,969,14443 0/0:1259,2:1261:99:0,3844,58301 0/0:21,0:21:63:0,63,945 0/0:229,0:229:99:0,710,10570 0/0:196,0:196:99:0,611,9088 0/1:17,2:19:33:33,0,708 0/0:20,1:21:18:0,18,855 0/0:296,1:297:99:0,861,13431 0/0:13,0:13:39:0,39,581 0/0:170,0:170:99:0,548,8107 0/0:18,0:18:60:0,60,891 0/1:40,3:43:3:3,0,1699 0/0:212,0:212:99:0,659,9782 0/0:68,0:68:99:0,208,3088 0/0:105,0:105:99:0,325,4847 0/0:119,0:119:99:0,370,5494 0/0:148,0:148:99:0,458,6814 0/0:239,1:240:99:0,717,11190 0/0:121,0:121:99:0,379,5621 0/0:87,0:87:99:0,274,4091 0/0:90,0:90:99:0,283,4204 0/0:112,0:112:99:0,340,5056 0/0:180,0:180:99:0,557,8294 0/0:170,0:170:99:0,527,7861 0/0:160,0:160:99:0,509,7540 0/0:286,1:287:99:0,852,13261 0/0:178,0:178:99:0,542,8076 0/0:129,1:130:99:0,352,5806 0/0:1320,2:1322:99:0,3982,60968 0/0:280,2:282:99:0,795,12968 0/0:107,0:107:99:0,334,4991 0/0:138,0:138:99:0,427,6360 0/0:76,0:76:99:0,232,3448 0/0:63,0:63:99:0,190,2819 0/0:108,0:108:99:0,346,5100 0/0:110,1:111:99:0,295,4982 0/0:65,1:66:99:0,169,3079 0/0:147,1:148:99:0,413,6730 0/0:192,1:193:99:0,551,8773 0/0:178,1:179:99:0,506,8145 0/0:574,1:575:99:0,1725,26313 0/0:130,0:130:99:0,403,6023 0/0:201,0:201:99:0,617,9175 0/0:1317,1:1318:99:0,4040,60730 0/0:1686,2:1688:99:0,5151,77947 0/0:903,1:904:99:0,2794,42142 0/0:94,0:94:99:0,289,4307 0/0:368,2:370:99:0,1069,17031 0/0:117,0:117:99:0,364,5363 0/1:5,2:7:66:66,0,246 0/0:534,1:535:99:0,1626,24803 0/0:7,0:7:21:0,21,315 0/0:238,0:238:99:0,728,10814 0/0:279,0:279:99:0,873,12957 0/0:205,2:207:99:0,545,9276 0/0:174,0:174:99:0,542,8042 0/0:149,2:151:99:0,386,6878 0/0:366,0:366:99:0,1156,17151 0/0:288,0:288:99:0,912,13529 0/0:212,1:213:99:0,632,10005 0/0:156,0:156:99:0,488,7224 0/0:290,1:291:99:0,864,13416 0/0:243,2:245:99:0,666,11076 0/0:184,1:185:99:0,527,8397 0/0:195,1:196:99:0,572,9071 0/1:26,2:28:6:6,0,1086 0/1:21,3:24:60:60,0,915 0/1:11,1:12:6:6,0,488 0/0:402,1:403:99:0,1219,18741 0/0:811,1:812:99:0,2485,37527 0/0:342,1:343:99:0,1011,15647 0/0:320,0:320:99:0,990,14772 0/0:186,0:186:99:0,572,8550 0/0:259,0:259:99:0,813,12132 0/0:16,1:17:6:0,6,675 0/0:47,0:47:99:0,147,2196 1/1:0,1:1:3:45,3,0 0/0:1276,7:1283:99:0,3655,58488
chr13 11096 . A AC 102377.49 . AC=46;AF=0.215;AN=214;BaseQRankSum=-1.157;ClippingRankSum=-0.000;DP=26016;ExcessHet=4.8714;FS=0.682;InbreedingCoeff=-0.0499;MLEAC=45;MLEAF=0.210;MQ=43.80;MQRankSum=-1.682;QD=10.42;ReadPosRankSum=0.308;SOR=0.744 GT:AD:DP:GQ:PL 0/0:17,0:17:51:0,51,588 0/0:420,0:420:99:0,1267,14362 0/1:9,5:14:99:107,0,258 0/1:104,169:273:99:4894,0,2727 0/0:131,0:131:99:0,393,4493 0/0:111,2:113:99:0,260,3709 0/0:36,2:38:48:0,48,1152 0/1:133,298:431:99:8619,0,3267 0/0:52,4:56:36:0,36,1671 0/0:42,2:44:66:0,66,1429 0/1:13,8:21:99:203,0,432 0/1:157,19:176:84:84,0,4889 0/1:54,12:66:99:179,0,1625 1/1:4,115:119:99:3669,201,0 0/1:46,4:50:5:5,0,1419 0/0:108,8:116:40:0,40,3517 1/1:1,64:65:99:2151,157,0 0/1:34,38:72:99:980,0,936 0/1:21,3:24:21:21,0,650 0/0:918,3:921:99:0,2674,31633 0/0:12,0:12:36:0,36,396 0/0:34,0:34:99:0,101,1090 0/0:1521,9:1530:99:0,4332,51890 0/1:55,36:91:99:876,0,1629 0/1:16,9:25:99:223,0,490 0/1:12,10:22:99:277,0,337 0/1:3,6:9:97:173,0,97 0/0:241,16:257:99:0,217,7633 0/0:198,0:198:99:0,601,6890 0/0:285,11:296:99:0,532,9653 0/0:1092,74:1166:99:0,962,34512 0/0:16,0:16:48:0,48,530 0/0:228,1:229:99:0,683,7771 0/0:187,1:188:99:0,535,6326 0/0:15,0:15:48:0,48,564 0/0:18,0:18:33:0,33,597 0/0:279,3:282:99:0,746,9350 0/0:12,0:12:36:0,36,408 0/0:152,9:161:99:0,139,4841 0/0:20,0:20:60:0,60,673 0/0:41,0:41:99:0,123,1404 0/0:208,0:208:99:0,626,7095 0/1:54,9:63:99:129,0,1720 0/0:110,0:110:99:0,331,3925 0/0:106,0:106:99:0,318,3563 0/0:140,0:140:99:0,421,4709 0/0:226,0:226:99:0,680,7685 1/1:1,118:119:99:3783,321,0 0/0:74,1:75:99:0,191,2455 0/0:83,1:84:99:0,218,2724 0/1:46,56:102:99:1526,0,1232 0/0:157,7:164:99:0,248,5141 1/1:2,161:163:99:5256,453,0 0/1:138,14:152:5:5,0,4321 0/0:259,13:272:99:0,397,8582 0/0:167,0:167:99:0,502,5711 0/1:109,12:121:13:13,0,3431 0/0:1245,1:1246:99:0,3756,43805 0/1:222,36:258:99:473,0,6663 0/0:96,0:96:99:0,291,3278 0/1:118,11:129:13:13,0,3734 0/0:78,1:79:99:0,232,2709 0/1:42,20:62:99:466,0,1195 0/0:92,5:97:99:0,137,2971 0/0:97,0:97:99:0,296,3332 0/0:70,0:70:99:0,209,2304 0/0:127,8:135:99:0,130,4082 0/0:179,1:180:99:0,509,6240 0/1:73,101:174:99:2799,0,1954 0/1:231,305:536:99:8549,0,6237 0/1:77,50:127:99:1299,0,2236 0/0:186,4:190:99:0,427,6277 0/1:669,538:1207:99:14296,0,18837 0/1:889,648:1537:99:16901,0,25577 0/1:546,325:871:99:8315,0,16033 0/0:98,0:98:99:0,295,3355 0/0:328,22:350:99:0,252,10451 0/1:105,12:117:76:76,0,3361 0/0:5,0:5:15:0,15,203 0/1:263,252:515:99:6956,0,7665 0/0:10,0:10:30:0,30,333 0/1:172,60:232:99:1412,0,5255 0/1:233,29:262:99:182,0,7197 0/0:188,11:199:99:0,234,5978 0/1:96,77:173:99:2010,0,2886 0/0:134,8:142:99:0,164,4383 0/0:306,23:329:99:0,255,9666 0/0:257,13:270:99:0,338,8379 0/1:164,46:210:99:886,0,4923 0/0:152,2:154:99:0,384,4978 0/1:238,27:265:99:108,0,7383 0/0:220,18:238:99:0,108,6921 0/1:95,99:194:99:2747,0,2649 0/1:139,61:200:99:1396,0,3986 0/0:31,0:31:93:0,93,1069 0/0:19,0:19:60:0,60,726 0/0:12,0:12:36:0,36,398 0/0:377,0:377:99:0,1139,13436 0/0:779,10:789:99:0,2036,27209 0/0:294,21:315:99:0,216,9272 0/1:264,31:295:99:120,0,7965 0/0:183,0:183:99:0,551,6226 0/1:214,21:235:80:80,0,6503 0/0:13,0:13:39:0,39,478 0/1:26,20:46:99:502,0,737 0/0:1,0:1:3:0,3,45 0/0:1131,70:1201:99:0,1032,36088
chr13 11099 . C CG 157.41 . AC=8;AF=0.037;AN=214;BaseQRankSum=2.757;ClippingRankSum=-0.000;DP=26208;ExcessHet=0.2952;FS=0.000;InbreedingCoeff=0.1415;MLEAC=5;MLEAF=0.023;MQ=43.81;MQRankSum=-14.448;QD=1.54;ReadPosRankSum=-4.996;SOR=1.986 GT:AD:DP:GQ:PL 0/0:18,0:18:54:0,54,782 0/0:445,1:446:99:0,1366,20020 0/0:16,0:16:51:0,51,724 0/0:292,4:296:99:0,765,12757 0/0:144,0:144:99:0,440,6219 0/0:118,1:119:99:0,319,5125 0/0:39,1:40:78:0,78,1738 0/0:460,1:461:99:0,1368,20282 0/0:59,1:60:99:0,142,2558 0/0:43,1:44:87:0,87,1768 0/0:21,1:22:21:0,21,846 0/0:183,1:184:99:0,521,8113 0/0:76,1:77:99:0,230,3316 0/0:136,1:137:99:0,331,5757 0/0:52,1:53:99:0,114,2192 0/0:123,0:123:99:0,373,5397 0/0:67,1:68:99:0,160,2926 0/0:81,0:81:99:0,249,3463 0/0:29,0:29:87:0,87,1216 0/0:961,0:961:99:0,2940,42517 0/0:16,0:16:48:0,48,646 0/0:31,1:32:60:0,60,1452 0/0:1608,4:1612:99:0,4795,72196 0/0:91,0:91:99:0,286,4152 0/0:28,1:29:42:0,42,1131 0/0:26,0:26:81:0,81,1129 0/1:8,2:10:60:60,0,316 0/0:264,0:264:99:0,807,11791 0/0:208,1:209:99:0,593,9145 0/0:314,0:314:99:0,963,13854 0/0:1218,2:1220:99:0,3605,54353 0/0:19,0:19:60:0,60,879 0/0:240,0:240:99:0,747,10775 0/0:192,0:192:99:0,593,8566 0/1:19,2:21:24:24,0,745 0/0:24,1:25:30:0,30,947 0/0:290,0:290:99:0,900,13060 0/0:13,0:13:39:0,39,560 0/0:177,1:178:99:0,504,7651 0/0:21,0:21:66:0,66,968 0/1:39,3:42:6:6,0,1624 0/0:222,0:222:99:0,680,9691 0/0:64,0:64:99:0,199,2907 0/0:118,0:118:99:0,358,5133 0/0:110,0:110:99:0,346,5104 0/0:150,0:150:99:0,454,6466 0/0:240,1:241:99:0,692,10543 0/0:130,0:130:99:0,392,5586 0/0:78,0:78:99:0,249,3519 0/0:86,0:86:99:0,265,3849 0/0:105,0:105:99:0,328,4805 0/0:170,0:170:99:0,518,7580 0/0:169,0:169:99:0,517,7483 0/0:155,0:155:99:0,476,6948 0/0:295,0:295:99:0,908,12998 0/0:172,0:172:99:0,527,7666 0/0:127,1:128:99:0,349,5654 0/0:1328,2:1330:99:0,3988,58702 0/0:269,1:270:99:0,780,11884 0/0:103,0:103:99:0,316,4597 0/0:135,0:135:99:0,412,5973 0/0:80,0:80:99:0,243,3513 0/0:65,0:65:99:0,199,2835 0/0:104,0:104:99:0,322,4609 0/0:98,1:99:99:0,259,4366 0/0:69,1:70:99:0,175,3098 0/0:140,1:141:99:0,382,6093 0/0:193,1:194:99:0,551,8545 0/0:181,1:182:99:0,517,8020 0/0:558,1:559:99:0,1695,25330 0/0:135,0:135:99:0,418,6134 0/0:199,0:199:99:0,626,9092 0/0:1262,1:1263:99:0,3839,56499 0/0:1666,3:1669:99:0,5046,74373 0/0:908,2:910:99:0,2738,40414 0/0:106,0:106:99:0,328,4677 0/0:370,2:372:99:0,1045,16239 0/0:125,0:125:99:0,393,5541 0/1:4,2:6:74:74,0,122 0/0:541,1:542:99:0,1610,23922 0/0:10,0:10:30:0,30,411 0/0:241,0:241:99:0,734,10653 0/0:274,0:274:99:0,843,12240 0/0:206,2:208:99:0,542,8967 0/0:187,0:187:99:0,572,8142 0/0:150,2:152:99:0,383,6618 0/0:354,0:354:99:0,1100,15777 0/0:283,0:283:99:0,872,12526 0/0:221,1:222:99:0,632,9750 0/0:161,0:161:99:0,491,7075 0/0:278,1:279:99:0,822,12461 0/0:244,1:245:99:0,666,10756 0/0:217,1:218:99:0,612,9252 0/0:216,1:217:99:0,613,9266 0/0:33,1:34:15:0,15,1310 0/1:20,3:23:66:66,0,802 0/1:11,1:12:9:9,0,446 0/0:385,1:386:99:0,1150,17430 0/0:810,2:812:99:0,2491,36858 0/0:326,1:327:99:0,984,14840 0/0:305,0:305:99:0,960,14053 0/0:191,0:191:99:0,593,8638 0/0:246,0:246:99:0,762,11101 0/0:13,1:14:3:0,3,589 0/0:52,0:52:99:0,156,2220 1/1:0,1:1:3:45,3,0 0/0:1256,7:1263:99:0,3552,55485
chr13 11120 . C G 819.71 . AC=8;AF=0.038;AN=212;BaseQRankSum=-0.387;ClippingRankSum=-0.001;DP=25199;ExcessHet=3.6051;FS=0.000;InbreedingCoeff=-0.0377;MLEAC=6;MLEAF=0.028;MQ=43.86;MQRankSum=0.181;QD=0.72;ReadPosRankSum=0.564;SOR=0.809 GT:AD:DP:GQ:PL 0/0:18,1:19:19:0,19,670 0/0:460,1:461:99:0,1342,17211 0/0:11,0:11:33:0,33,454 0/0:302,0:302:99:0,923,12351 0/0:163,0:163:99:0,493,6272 0/0:136,2:138:99:0,355,5130 0/0:44,0:44:99:0,135,1794 0/0:434,0:434:99:0,1343,18640 0/0:71,5:76:30:0,30,2422 0/0:42,2:44:51:0,51,1592 0/0:22,0:22:66:0,66,924 0/0:177,7:184:99:0,366,6368 0/0:72,1:73:99:0,182,2858 0/0:157,0:157:99:0,484,6788 0/1:46,8:54:99:148,0,1606 0/1:128,12:140:14:14,0,4456 0/0:80,0:80:99:0,250,3579 0/0:89,0:89:99:0,275,3586 0/0:43,1:44:99:0,122,1696 0/0:936,0:936:99:0,2819,34987 0/0:16,0:16:51:0,51,602 0/0:35,0:35:99:0,108,1359 0/0:1391,0:1391:99:0,4252,55890 0/0:89,0:89:99:0,268,3441 0/0:22,0:22:69:0,69,921 0/0:28,0:28:84:0,84,1082 0/0:11,0:11:33:0,33,447 0/0:229,17:246:22:0,22,9051 0/0:212,0:212:99:0,642,8921 0/1:279,32:311:99:401,0,10877 0/0:1093,3:1096:99:0,3217,44230 0/0:21,0:21:63:0,63,796 0/0:232,0:232:99:0,705,9678 0/0:167,0:167:99:0,501,6126 0/1:21,2:23:5:5,0,663 0/0:23,0:23:69:0,69,782 0/0:259,0:259:99:0,792,10203 0/0:19,0:19:57:0,57,748 0/0:152,0:152:99:0,469,6195 0/0:21,0:21:66:0,66,842 0/0:41,0:41:99:0,126,1564 0/0:227,0:227:99:0,685,8347 0/0:62,4:66:29:0,29,2338 0/0:114,0:114:99:0,345,4698 0/0:113,0:113:99:0,343,4751 0/0:138,0:138:99:0,418,5527 0/0:219,0:219:99:0,664,8064 0/0:126,0:126:99:0,394,5624 0/0:77,0:77:99:0,237,3223 0/0:76,0:76:99:0,234,3089 0/0:104,0:104:99:0,322,4636 0/0:140,4:144:99:0,276,5199 0/0:157,0:157:99:0,481,6877 0/0:141,6:147:99:0,235,5603 0/0:256,16:272:99:0,219,9305 0/0:193,0:193:99:0,583,7561 0/0:121,3:124:99:0,257,4648 0/0:1267,0:1267:99:0,3859,49879 0/0:244,0:244:99:0,740,8656 0/0:99,0:99:99:0,312,4330 0/0:125,7:132:99:0,164,4834 0/0:77,0:77:99:0,231,3091 0/0:64,0:64:99:0,193,2684 0/0:99,3:102:99:0,199,3926 0/0:96,0:96:99:0,289,3778 0/0:73,0:73:99:0,223,2965 0/0:128,2:130:99:0,322,5221 0/0:191,0:191:99:0,575,7528 0/0:186,3:189:99:0,445,7940 0/0:526,0:526:99:0,1619,23282 0/0:133,0:133:99:0,409,5712 0/0:204,6:210:99:0,384,7517 0/0:1108,0:1108:99:0,3392,46555 0/0:1538,0:1538:99:0,4688,64686 0/0:933,0:933:99:0,2838,38881 0/0:149,0:149:99:0,447,5685 0/0:356,7:363:99:0,831,13909 0/1:107,20:127:99:319,0,3692 0/1:5,1:6:14:14,0,185 0/0:519,0:519:99:0,1591,22156 0/0:6,0:6:18:0,18,203 0/1:209,19:228:20:20,0,7794 0/0:278,1:279:99:0,815,11038 0/0:192,0:192:99:0,576,7595 0/0:184,0:184:99:0,561,7331 0/0:148,0:148:99:0,444,5781 0/0:298,13:311:99:0,481,10188 0/1:236,23:259:24:24,0,7615 0/0:209,0:209:99:0,637,8271 0/0:152,0:152:99:0,464,5941 0/0:267,6:273:99:0,601,10515 0/0:229,8:237:99:0,424,8686 0/0:240,0:240:99:0,742,10125 0/0:274,1:275:99:0,814,10725 0/0:36,1:37:99:0,104,1329 0/0:25,1:26:39:0,39,879 0/0:12,0:12:42:0,42,526 0/0:367,1:368:99:0,1104,14310 0/0:800,0:800:99:0,2459,32216 0/0:301,8:309:99:0,622,11044 0/0:312,0:312:99:0,947,12363 0/0:201,0:201:99:0,613,7665 0/0:218,1:219:99:0,620,7881 0/0:17,0:17:54:0,54,704 0/0:51,0:51:99:0,153,1945 ./. 0/0:1141,34:1175:99:0,2228,44724
chr13 11135 . A G 13173.85 . AC=17;AF=0.080;AN=212;BaseQRankSum=-2.884;ClippingRankSum=-0.002;DP=26347;ExcessHet=6.0351;FS=0.000;InbreedingCoeff=-0.0872;MLEAC=17;MLEAF=0.080;MQ=43.87;MQRankSum=-0.364;QD=5.85;ReadPosRankSum=-0.041;SOR=0.561 GT:AD:DP:GQ:PL 0/0:20,0:20:60:0,60,764 0/0:479,0:479:99:0,1445,18449 0/0:13,0:13:39:0,39,453 0/0:324,0:324:99:0,970,12008 0/0:192,0:192:99:0,583,7671 0/0:159,0:159:99:0,478,6307 0/1:21,29:50:99:753,0,530 0/0:446,0:446:99:0,1338,16929 0/0:90,0:90:99:0,270,3542 0/0:53,0:53:99:0,159,2102 0/0:22,0:22:66:0,66,900 0/0:198,0:198:99:0,594,6999 0/0:94,0:94:99:0,282,3552 0/0:173,1:174:99:0,512,6602 0/0:61,0:61:99:0,184,2446 0/0:158,0:158:99:0,476,6415 0/0:87,0:87:99:0,262,3520 0/0:101,1:102:99:0,299,3829 0/0:61,1:62:99:0,175,2352 0/0:974,5:979:99:0,2765,36563 0/0:17,0:17:50:0,50,542 0/1:39,5:44:37:37,0,1201 0/0:1407,0:1407:99:0,4245,55966 0/0:96,0:96:99:0,288,3213 0/0:35,0:35:99:0,105,1259 0/0:29,0:29:87:0,87,1054 0/0:14,0:14:42:0,42,510 0/0:252,0:252:99:0,760,10485 0/0:200,11:211:99:0,163,7949 0/0:344,0:344:99:0,1041,14246 0/0:1085,1:1086:99:0,3278,43605 0/0:29,0:29:87:0,87,1084 0/1:224,41:265:99:918,0,8285 0/0:171,2:173:99:0,468,5986 0/0:25,0:25:75:0,75,916 0/0:24,0:24:72:0,72,852 0/0:268,0:268:99:0,812,10258 0/1:19,3:22:39:39,0,603 0/0:158,0:158:99:0,475,6328 0/0:24,0:24:72:0,72,912 0/1:32,8:40:99:167,0,1076 0/0:233,1:234:99:0,673,8194 0/0:65,0:65:99:0,195,2578 0/0:124,0:124:99:0,375,4988 0/1:71,39:110:99:1196,0,2384 0/0:142,0:142:99:0,423,5340 0/0:256,0:256:99:0,772,9365 0/0:128,1:129:99:0,375,4713 0/0:75,1:76:99:0,217,2941 0/0:82,0:82:99:0,245,3079 0/1:60,39:99:99:1186,0,2099 0/0:161,0:161:99:0,484,5722 0/0:157,0:157:99:0,468,5856 0/0:145,0:145:99:0,435,5536 0/0:261,0:261:99:0,788,10040 0/0:193,1:194:99:0,546,7406 0/0:120,0:120:99:0,358,4564 0/0:1352,1:1353:99:0,4077,52808 0/0:262,0:262:99:0,784,8799 0/1:40,73:113:99:2479,0,1203 0/0:127,0:127:99:0,380,4961 0/0:75,0:75:99:0,227,2979 0/0:68,0:68:99:0,202,2613 0/0:99,0:99:99:0,295,3722 0/0:97,0:97:99:0,290,3671 0/1:58,12:70:99:262,0,1918 0/0:133,0:133:99:0,399,5184 0/0:197,0:197:99:0,596,7928 0/0:185,0:185:99:0,558,7527 0/0:538,1:539:99:0,1620,22308 0/1:99,40:139:99:1010,0,3435 0/0:245,0:245:99:0,740,9642 0/0:1113,1:1114:99:0,3358,43974 0/0:1584,0:1584:99:0,4767,62741 0/0:955,0:955:99:0,2875,37740 0/1:173,19:192:99:114,0,5798 0/0:364,0:364:99:0,1092,14051 0/0:133,1:134:99:0,392,5116 0/0:7,0:7:21:0,21,254 0/0:530,1:531:99:0,1590,21019 0/0:9,0:9:27:0,27,307 0/0:221,0:221:99:0,669,8836 0/0:306,0:306:99:0,918,11903 0/0:191,0:191:99:0,574,7485 0/0:182,0:182:99:0,546,6318 0/0:151,0:151:99:0,460,5886 0/0:350,0:350:99:0,1049,12213 0/0:262,1:263:99:0,779,9251 0/1:130,71:201:99:1684,0,3756 0/0:152,0:152:99:0,457,5837 0/0:277,0:277:99:0,832,10769 0/0:242,0:242:99:0,728,9584 0/1:281,26:307:79:79,0,9743 0/0:329,1:330:99:0,947,12453 0/1:33,9:42:99:167,0,984 0/1:27,4:31:69:69,0,875 0/0:16,0:16:48:0,48,510 0/0:379,0:379:99:0,1148,14931 0/0:862,0:862:99:0,2600,34188 0/0:326,1:327:99:0,943,12350 0/1:251,65:316:99:1448,0,8713 0/1:139,73:212:99:1784,0,4357 0/0:228,0:228:99:0,688,8301 0/0:22,0:22:66:0,66,830 0/0:55,0:55:99:0,165,2022 ./. 0/0:1182,4:1186:99:0,3530,46836
chr13 11166 . C G 140.60 . AC=3;AF=0.014;AN=212;BaseQRankSum=-5.362;ClippingRankSum=-0.001;DP=26444;ExcessHet=3.0725;FS=0.000;InbreedingCoeff=-0.0131;MLEAC=2;MLEAF=9.434e-03;MQ=43.81;MQRankSum=0.585;QD=1.08;ReadPosRankSum=-0.165;SOR=0.498 GT:AD:DP:GQ:PL 0/0:21,0:21:63:0,63,757 0/0:486,0:486:99:0,1470,19200 0/0:13,0:13:39:0,39,455 0/0:349,0:349:99:0,1047,13295 0/0:210,0:210:99:0,634,8246 0/0:182,0:182:99:0,545,7064 0/0:41,0:41:99:0,126,1699 0/0:435,0:435:99:0,1306,16652 0/0:112,0:112:99:0,336,4351 0/0:60,0:60:99:0,184,2495 0/0:28,0:28:84:0,84,1076 0/0:203,0:203:99:0,610,7367 0/0:100,5:105:99:0,149,3514 0/0:160,0:160:99:0,477,5884 0/0:85,0:85:99:0,258,3438 0/0:188,0:188:99:0,568,7607 0/0:92,0:92:99:0,277,3655 0/0:110,0:110:99:0,329,4013 0/0:87,0:87:99:0,260,3276 0/0:868,1:869:99:0,2605,32254 0/0:14,0:14:42:0,42,541 0/0:44,0:44:99:0,132,1564 0/0:1281,90:1371:99:0,891,47977 0/0:86,0:86:99:0,261,2968 0/0:41,0:41:99:0,123,1542 0/0:27,0:27:81:0,81,1074 0/0:16,0:16:48:0,48,589 0/0:263,0:263:99:0,794,11116 0/0:203,0:203:99:0,610,8316 0/0:388,0:388:99:0,1169,16391 0/0:1017,0:1017:99:0,3059,41151 0/1:26,4:30:74:74,0,896 0/0:267,0:267:99:0,807,11298 0/0:183,0:183:99:0,551,6342 0/0:25,0:25:75:0,75,913 0/0:21,0:21:63:0,63,793 0/0:241,19:260:99:0,135,8547 0/0:23,0:23:69:0,69,915 0/0:144,2:146:99:0,392,5685 0/1:16,5:21:99:126,0,495 0/0:31,1:32:59:0,59,1169 0/0:235,0:235:99:0,704,7993 0/0:68,0:68:99:0,205,2750 0/0:127,4:131:99:0,230,4988 0/0:115,0:115:99:0,349,4702 0/0:144,0:144:99:0,433,5625 0/0:266,0:266:99:0,800,9353 0/0:128,0:128:99:0,385,5007 0/0:81,3:84:99:0,131,3070 0/1:73,6:79:4:4,0,2710 0/0:89,0:89:99:0,276,3793 0/0:172,4:176:99:0,401,5568 0/0:150,0:150:99:0,451,6031 0/0:128,2:130:99:0,306,5017 0/0:245,18:263:99:0,124,8598 0/0:211,0:211:99:0,636,8191 0/0:99,0:99:99:0,300,3987 0/0:1331,0:1331:99:0,4031,52330 0/0:297,0:297:99:0,894,10198 0/0:129,0:129:99:0,391,5407 0/0:116,0:116:99:0,352,4792 0/0:73,0:73:99:0,222,2983 0/0:60,0:60:99:0,183,2500 0/0:98,0:98:99:0,295,3995 0/0:96,0:96:99:0,292,3878 0/0:61,0:61:99:0,185,2407 0/0:136,0:136:99:0,410,5451 0/0:219,0:219:99:0,659,8805 0/0:212,0:212:99:0,637,8792 0/0:559,0:559:99:0,1683,23488 0/0:165,1:166:99:0,476,6429 0/0:263,0:263:99:0,789,10280 0/0:1122,0:1122:99:0,3381,44344 0/0:1534,0:1534:99:0,4614,61144 0/0:958,0:958:99:0,2887,37658 0/0:201,1:202:99:0,603,7814 0/0:372,0:372:99:0,1116,14497 0/0:120,0:120:99:0,366,4676 0/0:6,0:6:18:0,18,234 0/0:531,0:531:99:0,1599,21084 0/0:9,0:9:27:0,27,288 0/0:192,0:192:99:0,578,7575 0/0:316,6:322:99:0,730,12133 0/0:196,0:196:99:0,590,7881 0/0:158,12:170:99:0,163,5041 0/0:151,0:151:99:0,452,5361 0/0:330,7:337:99:0,814,11144 0/0:261,0:261:99:0,782,9043 0/0:200,0:200:99:0,604,7399 0/0:161,0:161:99:0,483,6358 0/0:281,11:292:99:0,460,10547 0/0:256,0:256:99:0,772,10126 0/0:349,3:352:99:0,1024,13526 0/0:345,2:347:99:0,1033,13569 0/0:40,0:40:99:0,119,1426 0/0:28,0:28:84:0,84,1055 0/0:10,0:10:30:0,30,381 0/0:392,1:393:99:0,1174,15463 0/0:836,0:836:99:0,2535,33326 0/0:289,0:289:99:0,871,11235 0/0:303,0:303:99:0,914,12044 0/0:219,0:219:99:0,657,8258 0/0:245,0:245:99:0,741,8577 0/0:24,0:24:72:0,72,900 0/0:60,0:60:99:0,179,2170 ./. 0/0:1165,2:1167:99:0,3443,46586
chr13 11167 . C CT 15017.32 . AC=20;AF=0.094;AN=212;BaseQRankSum=-2.503;ClippingRankSum=-0.001;DP=26425;ExcessHet=7.3042;FS=0.000;InbreedingCoeff=-0.1002;MLEAC=18;MLEAF=0.085;MQ=43.81;MQRankSum=-0.865;QD=2.05;ReadPosRankSum=0.262;SOR=0.703 GT:AD:DP:GQ:PL 0/0:20,1:21:18:0,18,845 0/1:420,50:470:99:876,0,17299 0/0:13,0:13:39:0,39,569 0/0:342,0:342:99:0,1050,15191 0/1:188,17:205:99:148,0,7806 0/1:167,13:180:8:8,0,6855 0/0:41,0:41:99:0,123,1840 0/0:420,9:429:99:0,915,18455 0/0:110,0:110:99:0,340,4989 0/0:57,3:60:55:0,55,2531 0/1:26,2:28:6:6,0,1086 0/0:190,12:202:99:0,106,8281 0/0:104,0:104:99:0,319,4672 0/0:157,0:157:99:0,487,7060 0/0:86,0:86:99:0,265,3884 0/1:170,14:184:54:54,0,7041 0/0:89,0:89:99:0,274,4033 0/0:105,0:105:99:0,325,4765 0/0:90,0:90:99:0,276,4025 0/1:778,83:861:99:1037,0,32694 0/1:13,1:14:3:3,0,527 0/0:44,0:44:99:0,132,1967 0/1:1197,169:1366:99:3440,0,49524 0/0:81,6:87:44:0,44,3515 0/0:39,2:41:33:0,33,1643 0/0:27,0:27:81:0,81,1210 0/0:16,0:16:48:0,48,720 0/0:258,0:258:99:0,792,11590 0/0:188,8:196:99:0,247,8162 0/0:386,0:386:99:0,1174,17336 0/1:906,101:1007:99:1403,0,37354 0/1:27,3:30:45:45,0,1108 0/0:253,14:267:99:0,163,10763 0/1:161,21:182:99:382,0,6557 0/0:25,0:25:75:0,75,1125 0/0:20,0:20:60:0,60,882 0/0:247,5:252:99:0,579,10769 0/0:23,0:23:69:0,69,1030 0/0:146,0:146:99:0,443,6477 0/0:19,1:20:55:0,55,837 0/0:31,1:32:51:0,51,1313 0/1:211,21:232:99:188,0,8716 0/0:68,0:68:99:0,205,3041 0/0:128,0:128:99:0,391,5760 0/0:114,0:114:99:0,349,5181 0/0:133,9:142:25:0,25,5446 0/1:245,22:267:99:122,0,10284 0/0:123,0:123:99:0,373,5454 0/0:80,0:80:99:0,247,3586 0/0:80,0:80:99:0,241,3557 0/0:88,0:88:99:0,280,4118 0/0:177,0:177:99:0,535,7824 0/0:144,0:144:99:0,434,6429 0/0:128,0:128:99:0,388,5690 0/0:257,0:257:99:0,798,11591 0/1:186,21:207:99:293,0,7619 0/0:96,0:96:99:0,289,4251 0/1:1088,225:1313:99:6239,0,45218 0/0:280,15:295:99:0,228,11956 0/0:128,0:128:99:0,394,5862 0/0:113,1:114:99:0,301,5019 0/1:60,11:71:99:323,0,2410 0/0:58,1:59:99:0,139,2612 0/0:94,5:99:95:0,95,4029 0/0:92,4:96:99:0,112,3931 0/0:57,1:58:99:0,133,2535 0/0:128,3:131:99:0,262,5517 0/1:189,26:215:99:485,0,7923 0/0:210,0:210:99:0,637,9304 0/0:519,28:547:99:0,427,22155 0/0:166,0:166:99:0,515,7497 0/0:248,9:257:99:0,361,10739 0/0:1062,46:1108:99:0,1255,45514 0/0:1455,64:1519:99:0,1640,61900 0/0:902,45:947:99:0,839,38729 0/0:196,7:203:99:0,346,8578 0/0:354,19:373:99:0,263,15034 0/0:118,0:118:99:0,363,5246 0/0:6,0:6:18:0,18,270 0/0:508,18:526:99:0,809,21992 0/0:9,0:9:27:0,27,400 0/0:192,0:192:99:0,584,8540 0/0:321,0:321:99:0,978,14399 0/0:192,7:199:99:0,290,8236 0/0:167,0:167:99:0,518,7544 0/0:154,0:154:99:0,478,6939 0/0:330,4:334:99:0,873,14389 0/0:258,0:258:99:0,783,11514 0/0:201,0:201:99:0,620,9106 0/0:159,0:159:99:0,482,7093 0/0:300,0:300:99:0,918,13492 0/0:255,0:255:99:0,786,11517 0/0:345,1:346:99:0,1028,15589 0/0:335,12:347:99:0,516,14369 0/0:38,2:40:30:0,30,1615 0/0:28,0:28:84:0,84,1260 0/0:10,0:10:30:0,30,450 0/0:393,0:393:99:0,1201,17593 0/0:805,33:838:99:0,1075,34598 0/0:286,0:286:99:0,891,12964 0/0:300,0:300:99:0,918,13469 0/1:202,18:220:81:81,0,8533 0/1:230,16:246:12:12,0,9400 0/1:20,4:24:99:108,0,828 0/0:58,1:59:99:0,133,2521 ./. 0/0:1135,24:1159:99:0,2474,49783
chr13 11174 . T G 14685.97 . AC=19;AF=0.090;AN=212;BaseQRankSum=-0.593;ClippingRankSum=-0.001;DP=25823;ExcessHet=6.8541;FS=0.000;InbreedingCoeff=-0.0955;MLEAC=17;MLEAF=0.080;MQ=43.77;MQRankSum=-0.735;QD=2.09;ReadPosRankSum=-0.157;SOR=0.757 GT:AD:DP:GQ:PL 0/0:20,1:21:18:0,18,848 0/1:408,54:462:99:954,0,17151 0/0:11,0:11:33:0,33,495 0/0:316,0:316:99:0,979,14431 0/1:179,16:195:99:152,0,7568 0/0:165,10:175:86:0,86,6992 0/0:38,0:38:99:0,117,1750 0/0:417,8:425:99:0,943,18442 0/0:114,0:114:99:0,343,5057 0/0:59,4:63:14:0,14,2461 0/1:29,4:33:62:62,0,1215 0/0:196,13:209:18:0,18,8069 0/0:112,0:112:99:0,337,4902 0/0:155,0:155:99:0,481,7043 0/0:80,0:80:99:0,250,3713 0/1:172,15:187:83:83,0,7177 0/0:89,0:89:99:0,280,4127 0/0:107,0:107:99:0,322,4760 0/0:93,0:93:99:0,283,4184 0/1:793,84:877:99:1092,0,32626 0/1:13,1:14:3:3,0,527 0/0:43,0:43:99:0,129,1935 0/1:1172,170:1342:99:3415,0,49202 0/0:87,3:90:99:0,138,3635 0/0:36,2:38:30:0,30,1609 0/0:26,0:26:81:0,81,1210 0/0:16,0:16:48:0,48,720 0/0:254,0:254:99:0,782,11540 0/0:189,8:197:99:0,250,8237 0/0:382,0:382:99:0,1180,17413 0/1:882,93:975:99:1291,0,37250 0/1:25,3:28:51:51,0,1024 0/0:246,15:261:99:0,141,10624 0/1:157,19:176:99:388,0,6553 0/0:25,0:25:75:0,75,1125 0/0:18,0:18:57:0,57,850 0/0:241,7:248:99:0,504,10711 0/0:23,0:23:69:0,69,995 0/0:142,0:142:99:0,449,6585 0/0:18,1:19:52:0,52,806 0/0:28,1:29:45:0,45,1255 0/1:210,19:229:99:122,0,8869 0/0:69,0:69:99:0,211,3128 0/0:123,0:123:99:0,379,5610 0/0:120,0:120:99:0,367,5375 0/0:130,9:139:19:0,19,5420 0/1:253,18:271:39:39,0,10420 0/0:116,0:116:99:0,352,5214 0/0:74,0:74:99:0,228,3372 0/0:83,0:83:99:0,256,3736 0/0:89,0:89:99:0,271,3971 0/0:179,0:179:99:0,551,8109 0/0:140,0:140:99:0,428,6356 0/0:126,0:126:99:0,397,5797 0/0:253,0:253:99:0,786,11462 0/1:182,16:198:99:150,0,7603 0/0:92,0:92:99:0,295,4355 0/1:1073,219:1292:99:6042,0,44699 0/0:286,16:302:99:0,227,12221 0/0:125,0:125:99:0,385,5721 0/0:114,1:115:99:0,319,5245 0/1:54,12:66:99:335,0,2289 0/0:56,1:57:99:0,127,2456 0/0:96,3:99:99:0,166,4150 0/0:88,4:92:99:0,109,3893 0/0:54,1:55:99:0,121,2381 0/0:121,3:124:99:0,247,5359 0/1:192,28:220:99:556,0,8036 0/0:203,0:203:99:0,623,9204 0/0:509,30:539:99:0,305,21943 0/0:160,0:160:99:0,506,7371 0/0:248,12:260:99:0,293,10757 0/0:1039,45:1084:99:0,1255,44830 0/0:1398,65:1463:99:0,1453,60548 0/0:901,47:948:99:0,811,38731 0/0:202,7:209:99:0,328,8798 0/0:348,17:365:99:0,325,14995 0/0:109,0:109:99:0,349,5078 0/0:6,0:6:18:0,18,270 0/0:511,15:526:99:0,827,22281 0/0:8,0:8:24:0,24,360 0/0:185,0:185:99:0,568,8358 0/0:318,0:318:99:0,978,14425 0/0:184,8:192:99:0,236,8009 0/0:162,0:162:99:0,503,7335 0/0:149,0:149:99:0,454,6672 0/0:324,6:330:99:0,783,14196 0/0:255,0:255:99:0,795,11644 0/0:209,0:209:99:0,637,9119 0/0:161,0:161:99:0,494,7288 0/0:294,0:294:99:0,915,13504 0/0:258,0:258:99:0,804,11755 0/0:353,0:353:99:0,1089,15991 0/0:338,11:349:99:0,540,14730 0/0:37,2:39:27:0,27,1575 0/0:28,0:28:84:0,84,1246 0/0:10,0:10:30:0,30,450 0/0:388,0:388:99:0,1210,17799 0/0:790,33:823:99:0,1097,34711 0/0:292,0:292:99:0,897,13140 0/0:295,0:295:99:0,912,13395 0/1:206,15:221:4:4,0,8507 0/1:218,18:236:61:61,0,9141 0/1:20,4:24:99:108,0,828 0/0:53,1:54:99:0,121,2364 ./. 0/0:1107,27:1134:99:0,2266,48829
chr13 11185 . A T 502.87 . AC=2;AF=9.434e-03;AN=212;BaseQRankSum=2.727;ClippingRankSum=-0.001;DP=24776;ExcessHet=3.0309;FS=0.000;InbreedingCoeff=-0.0101;MLEAC=1;MLEAF=4.717e-03;MQ=43.71;MQRankSum=-3.217;QD=1.39;ReadPosRankSum=-0.511;SOR=0.837 GT:AD:DP:GQ:PL 0/0:17,0:17:51:0,51,758 0/0:470,0:470:99:0,1467,21117 0/0:9,0:9:27:0,27,364 0/0:301,0:301:99:0,930,13302 0/0:186,0:186:99:0,576,8070 0/0:176,2:178:99:0,460,7778 0/0:33,0:33:99:0,99,1429 0/0:431,0:431:99:0,1349,19339 0/0:107,2:109:99:0,250,4709 0/0:63,2:65:99:0,108,2614 0/0:34,0:34:99:0,108,1537 0/0:214,0:214:99:0,662,9497 0/0:107,1:108:99:0,285,4487 0/0:150,0:150:99:0,468,6462 0/0:81,4:85:82:0,82,3441 0/0:192,6:198:99:0,340,8238 0/0:97,0:97:99:0,298,4306 0/0:89,5:94:60:0,60,3463 0/0:70,0:70:99:0,214,2961 0/0:868,0:868:99:0,2691,38459 0/0:12,0:12:36:0,36,516 0/0:36,0:36:99:0,111,1622 0/0:1201,0:1201:99:0,3787,54857 0/0:80,0:80:99:0,252,3527 0/0:37,0:37:99:0,117,1695 0/0:22,1:23:24:0,24,920 0/0:14,0:14:42:0,42,627 0/0:232,13:245:99:0,132,9593 0/0:189,0:189:99:0,573,8255 0/1:326,36:362:99:545,0,13649 0/0:969,1:970:99:0,2977,44081 0/0:25,0:25:75:0,75,1120 0/0:264,0:264:99:0,808,11787 0/0:176,0:176:99:0,556,7934 0/0:22,1:23:24:0,24,930 0/1:13,1:14:3:3,0,529 0/0:265,0:265:99:0,811,11655 0/0:18,0:18:54:0,54,810 0/0:139,0:139:99:0,436,6391 0/0:19,0:19:57:0,57,829 0/0:21,0:21:63:0,63,935 0/0:238,0:238:99:0,734,10614 0/0:76,0:76:99:0,235,3447 0/0:116,0:116:99:0,358,5242 0/0:113,0:113:99:0,339,4947 0/0:134,0:134:99:0,408,5914 0/0:263,0:263:99:0,827,11816 0/0:112,0:112:99:0,346,4978 0/0:74,0:74:99:0,229,3303 0/0:80,0:80:99:0,246,3517 0/0:92,0:92:99:0,279,4051 0/0:173,0:173:99:0,529,7676 0/0:130,0:130:99:0,403,5797 0/0:122,0:122:99:0,379,5475 0/0:244,5:249:99:0,519,10661 0/0:187,0:187:99:0,598,8620 0/0:80,7:87:2:0,2,3298 0/0:1226,0:1226:99:0,3770,54725 0/0:276,0:276:99:0,869,12501 0/0:118,0:118:99:0,361,5219 0/0:116,1:117:99:0,316,5161 0/0:59,0:59:99:0,177,2533 0/0:51,0:51:99:0,153,2222 0/0:96,3:99:99:0,198,4124 0/0:91,0:91:99:0,279,4021 0/0:48,0:48:99:0,147,1995 0/0:115,2:117:99:0,246,4936 0/0:214,0:214:99:0,668,9790 0/0:215,1:216:99:0,621,9297 0/0:528,0:528:99:0,1624,23615 0/0:165,0:165:99:0,538,7651 0/0:260,1:261:99:0,776,11890 0/0:927,0:927:99:0,2842,41121 0/0:1282,0:1282:99:0,3957,57365 0/0:919,0:919:99:0,2821,40891 0/0:174,0:174:99:0,529,7526 0/0:332,11:343:99:0,625,14568 0/0:100,3:103:99:0,186,4295 0/0:5,0:5:15:0,15,225 0/0:522,0:522:99:0,1619,23596 0/0:5,0:5:15:0,15,214 0/0:173,10:183:81:0,81,7251 0/0:296,20:316:99:0,110,12265 0/0:188,6:194:99:0,338,8096 0/0:156,0:156:99:0,496,6941 0/0:143,7:150:99:0,136,6102 0/0:320,5:325:99:0,799,13752 0/0:233,1:234:99:0,682,10242 0/0:199,0:199:99:0,614,8833 0/0:156,0:156:99:0,479,6892 0/0:283,2:285:99:0,833,12619 0/0:256,0:256:99:0,791,11484 0/0:312,0:312:99:0,949,13737 0/0:325,0:325:99:0,996,14360 0/0:32,0:32:96:0,96,1362 0/0:25,0:25:75:0,75,1102 0/0:8,0:8:24:0,24,350 0/0:388,0:388:99:0,1215,17612 0/0:823,0:823:99:0,2573,37093 0/0:290,5:295:99:0,695,12790 0/0:283,12:295:99:0,458,12204 0/0:217,0:217:99:0,671,9681 0/0:217,3:220:99:0,554,9412 0/0:24,0:24:75:0,75,1110 0/0:46,0:46:99:0,138,1992 ./. 0/0:1109,3:1112:99:0,3290,50063
chr13 11189 . C T 1047.71 . AC=4;AF=0.019;AN=212;BaseQRankSum=-0.663;ClippingRankSum=-0.001;DP=25305;ExcessHet=3.1353;FS=0.000;InbreedingCoeff=-0.0197;MLEAC=4;MLEAF=0.019;MQ=43.70;MQRankSum=1.375;QD=0.69;ReadPosRankSum=-1.243;SOR=0.751 GT:AD:DP:GQ:PL 0/0:17,0:17:51:0,51,653 0/0:492,0:492:99:0,1481,19375 0/0:9,0:9:27:0,27,377 0/0:313,0:313:99:0,946,11924 0/0:189,0:189:99:0,569,7252 0/0:182,0:182:99:0,553,7108 0/0:33,0:33:99:0,99,1354 0/0:448,0:448:99:0,1351,17518 0/0:109,0:109:99:0,327,4267 0/0:63,0:63:99:0,190,2567 0/0:34,0:34:99:0,102,1323 0/0:212,0:212:99:0,640,7746 0/0:105,0:105:99:0,314,3949 0/0:149,0:149:99:0,448,5866 0/0:88,0:88:99:0,264,3439 0/0:197,0:197:99:0,596,7975 0/0:98,0:98:99:0,294,3866 0/0:94,0:94:99:0,282,3638 0/0:70,0:70:99:0,209,2683 0/0:888,0:888:99:0,2670,33699 0/0:11,0:11:33:0,33,458 0/0:37,0:37:99:0,111,1503 0/0:1228,37:1265:99:0,2390,47955 0/0:81,0:81:99:0,243,2681 0/0:38,0:38:99:0,114,1495 0/0:23,0:23:69:0,69,959 0/0:14,0:14:42:0,42,512 0/0:247,0:247:99:0,746,10322 0/0:188,0:188:99:0,563,7691 0/0:371,0:371:99:0,1129,15588 0/0:993,1:994:99:0,2966,40326 0/0:25,0:25:75:0,75,1061 0/0:268,0:268:99:0,805,11023 0/0:180,0:180:99:0,541,6354 0/0:23,0:23:69:0,69,900 0/0:13,0:13:39:0,39,562 0/0:260,6:266:99:0,556,9924 0/0:18,0:18:54:0,54,733 0/0:141,8:149:99:0,156,5335 0/0:18,0:18:54:0,54,726 0/0:21,0:21:63:0,63,884 0/0:236,0:236:99:0,710,8770 0/0:78,0:78:99:0,234,3095 0/1:106,12:118:99:104,0,3983 0/0:111,0:111:99:0,333,4233 0/0:136,0:136:99:0,408,5335 0/0:273,0:273:99:0,823,9843 0/0:110,0:110:99:0,330,4243 0/0:76,0:76:99:0,231,3090 0/0:80,0:80:99:0,247,3285 0/0:94,0:94:99:0,282,3729 0/0:170,8:178:99:0,314,5733 0/0:133,0:133:99:0,402,5302 0/0:120,2:122:99:0,293,4611 0/0:255,5:260:99:0,584,9497 0/0:200,0:200:99:0,609,7858 0/0:82,0:82:99:0,249,3297 0/0:1237,1:1238:99:0,3682,48871 0/0:290,0:290:99:0,873,10318 0/0:121,0:121:99:0,363,4761 0/0:118,0:118:99:0,358,4871 0/0:58,0:58:99:0,177,2355 0/0:51,0:51:99:0,153,1972 0/0:97,0:97:99:0,291,3876 0/0:90,0:90:99:0,271,3496 0/0:48,0:48:99:0,143,1772 0/0:116,0:116:99:0,355,4850 0/0:220,0:220:99:0,662,8652 0/0:217,0:217:99:0,653,8603 0/0:538,0:538:99:0,1627,22586 0/0:186,0:186:99:0,560,6911 0/0:272,0:272:99:0,822,10811 0/0:928,0:928:99:0,2791,36793 0/0:1299,1:1300:99:0,3879,51534 0/0:920,0:920:99:0,2775,36673 0/0:178,0:178:99:0,534,6795 0/0:364,0:364:99:0,1093,14053 0/0:113,0:113:99:0,343,4433 0/0:5,0:5:15:0,15,219 0/0:539,0:539:99:0,1621,22023 0/0:4,0:4:12:0,12,171 0/0:188,0:188:99:0,568,7612 0/0:312,6:318:99:0,732,12159 0/0:202,0:202:99:0,607,8049 0/0:158,6:164:99:0,288,5401 0/0:155,0:155:99:0,465,5476 0/0:322,0:322:99:0,977,11625 0/0:237,0:237:99:0,711,8405 0/0:198,0:198:99:0,597,6805 0/1:143,13:156:41:41,0,5053 0/0:288,9:297:99:0,550,11146 0/0:265,0:265:99:0,802,10468 0/0:319,0:319:99:0,961,12615 0/0:318,0:318:99:0,955,12647 0/0:33,0:33:99:0,99,1236 0/0:25,0:25:75:0,75,1033 0/0:8,0:8:24:0,24,346 0/1:355,44:399:99:469,0,12843 0/1:770,78:848:99:523,0,27688 0/0:306,0:306:99:0,917,11972 0/0:301,0:301:99:0,904,11685 0/0:222,0:222:99:0,671,8401 0/0:216,0:216:99:0,654,7872 0/0:25,0:25:75:0,75,1060 0/0:46,0:46:99:0,138,1831 ./. 0/0:1144,0:1144:99:0,3442,45702
chr13 11196 . G T 482.09 . AC=4;AF=0.019;AN=212;BaseQRankSum=1.820;ClippingRankSum=-0.001;DP=24603;ExcessHet=3.1353;FS=0.000;InbreedingCoeff=-0.0196;MLEAC=2;MLEAF=9.434e-03;MQ=43.66;MQRankSum=-3.293;QD=0.78;ReadPosRankSum=-2.040;SOR=0.984 GT:AD:DP:GQ:PL 0/0:17,0:17:54:0,54,797 0/0:503,0:503:99:0,1551,22253 0/0:7,0:7:24:0,24,355 0/0:304,0:304:99:0,960,13772 0/0:173,0:173:99:0,558,7864 0/0:178,2:180:99:0,461,7923 0/0:30,0:30:96:0,96,1429 0/0:435,0:435:99:0,1344,19420 0/0:109,2:111:99:0,256,4845 0/0:57,2:59:99:0,99,2547 0/0:36,0:36:99:0,108,1572 0/0:212,0:212:99:0,653,9535 0/0:102,1:103:99:0,283,4531 0/0:136,0:136:99:0,427,6138 0/0:84,4:88:93:0,93,3584 0/0:193,6:199:99:0,311,8357 0/0:95,0:95:99:0,295,4295 0/0:84,5:89:70:0,70,3688 0/0:62,0:62:99:0,202,2852 0/0:861,0:861:99:0,2649,38326 0/0:8,0:8:27:0,27,402 0/0:33,0:33:99:0,102,1523 0/0:1227,0:1227:99:0,3779,55003 0/0:78,0:78:99:0,238,3400 0/0:31,0:31:99:0,99,1454 0/0:16,1:17:6:0,6,675 0/0:13,0:13:42:0,42,627 0/0:230,15:245:99:0,149,9830 0/0:185,0:185:99:0,573,8280 0/1:316,36:352:99:520,0,13270 0/0:973,0:973:99:0,2992,43927 0/0:25,0:25:75:0,75,1114 0/0:252,0:252:99:0,786,11616 0/0:178,0:178:99:0,559,7989 0/0:18,1:19:24:0,24,930 0/1:11,1:12:6:6,0,495 0/0:249,0:249:99:0,794,11509 0/0:18,0:18:54:0,54,810 0/0:142,0:142:99:0,442,6466 0/0:14,0:14:48:0,48,701 0/0:19,0:19:60:0,60,895 0/0:229,0:229:99:0,701,10297 0/0:73,0:73:99:0,220,3250 0/0:110,0:110:99:0,343,5034 0/0:110,0:110:99:0,331,4896 0/0:129,0:129:99:0,401,5827 0/0:269,0:269:99:0,839,12044 0/0:104,0:104:99:0,325,4748 0/0:76,0:76:99:0,238,3446 0/0:81,0:81:99:0,247,3553 0/0:98,0:98:99:0,301,4366 0/0:178,0:178:99:0,542,7890 0/0:124,0:124:99:0,382,5613 0/0:117,0:117:99:0,364,5322 0/0:258,5:263:99:0,580,11291 0/0:195,0:195:99:0,616,8896 0/1:73,6:79:13:13,0,3069 0/0:1179,0:1179:99:0,3655,53381 0/0:287,0:287:99:0,882,12732 0/0:114,0:114:99:0,361,5215 0/0:114,1:115:99:0,310,5143 0/0:53,0:53:99:0,162,2379 0/0:44,0:44:99:0,138,2015 0/0:94,3:97:99:0,189,4054 0/0:88,0:88:99:0,273,3965 0/0:39,0:39:99:0,117,1701 0/0:111,1:112:99:0,315,5031 0/0:233,0:233:99:0,701,10211 0/0:200,1:201:99:0,573,8891 0/0:520,0:520:99:0,1618,23804 0/0:189,0:189:99:0,577,8173 0/0:272,4:276:99:0,691,12132 0/0:891,0:891:99:0,2768,40204 0/0:1267,0:1267:99:0,3959,57754 0/0:908,0:908:99:0,2791,40708 0/0:168,0:168:99:0,514,7382 0/0:341,10:351:99:0,662,14752 0/0:105,3:108:99:0,193,4473 0/0:5,0:5:15:0,15,225 0/0:516,0:516:99:0,1592,23324 0/0:3,0:3:9:0,9,135 0/1:171,13:184:16:16,0,7220 0/0:289,20:309:99:0,117,12167 0/0:191,6:197:99:0,348,8371 0/0:151,0:151:99:0,472,6701 0/0:142,9:151:99:0,100,6057 0/0:303,7:310:99:0,686,13316 0/0:222,1:223:99:0,676,10334 0/0:189,0:189:99:0,578,8496 0/0:151,0:151:99:0,473,6855 0/0:290,1:291:99:0,889,13031 0/0:259,0:259:99:0,803,11680 0/0:312,0:312:99:0,970,14079 0/0:296,0:296:99:0,917,13328 0/0:28,0:28:87:0,87,1278 0/0:25,0:25:75:0,75,1111 0/0:8,0:8:24:0,24,360 0/0:390,0:390:99:0,1213,17649 0/0:832,0:832:99:0,2597,37649 0/0:309,8:317:99:0,651,13541 0/0:288,10:298:99:0,497,12608 0/0:217,0:217:99:0,686,9917 0/0:212,2:214:99:0,563,9394 0/0:23,0:23:69:0,69,1034 0/0:43,0:43:99:0,135,1964 ./. 0/0:1136,5:1141:99:0,3309,50821
chr13 11213 . C G 94.27 . AC=4;AF=0.019;AN=212;BaseQRankSum=-3.812;ClippingRankSum=-0.001;DP=23350;ExcessHet=3.1353;FS=0.000;InbreedingCoeff=-0.0213;MLEAC=3;MLEAF=0.014;MQ=43.61;MQRankSum=0.624;QD=0.19;ReadPosRankSum=-0.515;SOR=0.838 GT:AD:DP:GQ:PL 0/0:15,0:15:45:0,45,592 0/0:467,26:493:99:0,687,16747 0/1:5,1:6:24:24,0,187 0/0:286,0:286:99:0,857,10798 0/0:141,10:151:99:0,148,4751 0/0:184,5:189:99:0,396,6735 0/0:22,0:22:66:0,66,861 0/0:401,16:417:99:0,706,14898 0/0:112,0:112:99:0,336,4344 0/0:64,1:65:99:0,153,2422 0/0:39,0:39:99:0,117,1536 0/0:197,5:202:99:0,457,7036 0/0:99,0:99:99:0,298,3697 0/0:142,0:142:99:0,426,5514 0/0:98,0:98:99:0,292,3699 0/0:176,10:186:99:0,185,6385 0/0:86,0:86:99:0,259,3380 0/0:85,0:85:99:0,260,3313 0/0:55,1:56:99:0,155,1896 0/0:728,26:754:99:0,1403,26105 0/0:4,0:4:12:0,12,166 0/0:25,0:25:75:0,75,1026 0/0:1158,31:1189:99:0,2602,44402 0/0:63,3:66:86:0,86,2103 0/0:26,2:28:8:0,8,931 0/0:11,0:11:33:0,33,452 0/0:12,0:12:36:0,36,460 0/0:236,0:236:99:0,711,9929 0/0:158,1:159:99:0,449,6507 0/0:333,0:333:99:0,1003,13988 0/0:877,50:927:99:0,946,33139 0/1:18,2:20:11:11,0,697 0/0:237,9:246:99:0,427,9381 0/0:177,14:191:99:0,283,5969 0/0:11,0:11:33:0,33,425 0/0:5,0:5:15:0,15,213 0/0:230,11:241:99:0,378,8451 0/0:14,0:14:42:0,42,561 0/0:138,0:138:99:0,420,5457 0/0:6,0:6:18:0,18,245 0/0:14,0:14:42:0,42,528 0/0:208,8:216:99:0,375,7604 0/0:69,0:69:99:0,207,2794 0/0:104,0:104:99:0,313,4338 0/0:98,0:98:99:0,294,3810 0/0:109,6:115:96:0,96,3969 0/0:242,24:266:99:0,124,7796 0/0:97,0:97:99:0,290,3808 0/0:67,0:67:99:0,202,2716 0/0:76,0:76:99:0,229,2978 0/0:83,0:83:99:0,251,3333 0/0:173,0:173:99:0,519,6127 0/0:118,1:119:99:0,351,4803 0/0:109,0:109:99:0,328,4482 0/0:271,0:271:99:0,814,10622 0/0:160,0:160:99:0,478,6086 0/0:68,1:69:99:0,170,2721 0/0:1064,63:1127:99:0,1399,38059 0/0:262,10:272:99:0,540,8983 0/0:105,0:105:99:0,315,4223 0/0:102,4:106:99:0,228,4101 0/0:47,0:47:99:0,141,1907 0/0:32,0:32:99:0,99,1346 0/0:80,3:83:99:0,191,3227 0/0:78,3:81:99:0,154,2935 0/0:36,1:37:75:0,75,1450 0/0:107,0:107:99:0,324,4364 0/0:215,4:219:99:0,561,8135 0/0:178,0:178:99:0,534,7141 0/0:485,10:495:99:0,1210,20369 0/0:187,0:187:99:0,564,7075 0/0:267,7:274:99:0,540,10048 0/0:793,38:831:99:0,1202,29535 0/0:1149,42:1191:99:0,2155,43014 0/0:827,35:862:99:0,1411,31115 0/0:149,1:150:99:0,411,5471 0/0:315,0:315:99:0,949,12136 0/0:103,0:103:99:0,309,3772 0/1:3,1:4:32:32,0,109 0/1:442,42:484:99:111,0,16064 0/0:3,0:3:9:0,9,110 0/0:170,0:170:99:0,512,6632 0/0:303,0:303:99:0,914,11783 0/0:177,3:180:99:0,468,6864 0/0:152,0:152:99:0,459,5538 0/0:141,0:141:99:0,423,5127 0/0:283,13:296:99:0,471,9656 0/0:207,0:207:99:0,634,7688 0/0:183,0:183:99:0,549,6558 0/0:145,1:146:99:0,431,5618 0/0:286,1:287:99:0,826,11014 0/0:256,0:256:99:0,777,9981 0/0:280,1:281:99:0,804,10757 0/0:255,14:269:99:0,399,9493 0/0:21,0:21:63:0,63,763 0/0:22,0:22:66:0,66,880 0/0:6,0:6:18:0,18,257 0/0:393,0:393:99:0,1183,15408 0/0:827,12:839:99:0,2160,32004 0/0:303,0:303:99:0,920,11927 0/0:290,0:290:99:0,870,11165 0/0:192,16:208:99:0,133,6590 0/0:200,4:204:99:0,483,6959 0/0:14,1:15:8:0,8,526 0/0:34,1:35:64:0,64,1323 ./. 0/0:1071,29:1100:99:0,2388,41450
chr13 11230 . C T 215.06 . AC=5;AF=0.024;AN=210;BaseQRankSum=-6.308;ClippingRankSum=-0.001;DP=21370;ExcessHet=3.2217;FS=0.000;InbreedingCoeff=-0.0297;MLEAC=5;MLEAF=0.024;MQ=43.61;MQRankSum=-3.141;QD=0.37;ReadPosRankSum=2.178;SOR=0.978 GT:AD:DP:GQ:PL 0/0:16,0:16:48:0,48,673 0/0:431,0:431:99:0,1298,16822 0/0:4,0:4:12:0,12,174 0/0:243,7:250:99:0,504,8705 0/0:124,0:124:99:0,378,4720 0/0:151,14:165:31:0,31,5304 0/0:7,0:7:21:0,21,249 0/0:387,0:387:99:0,1169,14798 0/0:105,6:111:99:0,179,4024 0/0:63,5:68:53:0,53,2365 0/0:48,0:48:99:0,147,1885 0/0:195,0:195:99:0,586,6948 0/0:81,1:82:99:0,211,3024 0/0:125,0:125:99:0,375,4898 0/0:97,7:104:76:0,76,3523 0/0:156,16:172:55:0,55,5568 0/0:92,0:92:99:0,279,3625 0/0:73,0:73:99:0,226,2695 0/0:35,2:37:41:0,41,1051 0/0:673,0:673:99:0,2041,25767 0/0:2,0:2:6:0,6,79 0/0:12,0:12:42:0,42,530 0/0:1111,0:1111:99:0,3373,44117 0/0:62,0:62:99:0,189,2338 0/0:20,0:20:60:0,60,835 0/1:8,2:10:52:52,0,311 0/0:5,0:5:15:0,15,204 0/0:200,13:213:99:0,163,8117 0/0:139,0:139:99:0,420,5901 0/0:286,13:299:99:0,520,11718 0/0:817,57:874:99:0,521,30821 0/0:9,0:9:30:0,30,416 0/0:220,0:220:99:0,660,9253 0/0:192,0:192:99:0,576,7054 0/0:3,0:3:12:0,12,171 0/0:3,0:3:9:0,9,125 0/0:228,1:229:99:0,666,8971 0/0:10,0:10:30:0,30,396 0/0:114,0:114:99:0,342,4513 0/0:4,0:4:15:0,15,201 0/0:5,0:5:18:0,18,243 0/0:211,0:211:99:0,639,8260 0/0:60,1:61:99:0,150,2436 0/0:93,0:93:99:0,280,3913 0/0:82,0:82:99:0,249,3386 0/0:106,0:106:99:0,319,4288 0/0:254,0:254:99:0,768,9394 0/0:83,0:83:99:0,252,3411 0/0:73,0:73:99:0,219,2989 0/0:74,1:75:99:0,187,2936 0/0:76,0:76:99:0,229,3094 0/0:158,2:160:99:0,398,5552 0/0:110,0:110:99:0,333,4526 0/0:94,2:96:99:0,227,3698 0/0:254,11:265:99:0,476,9470 0/0:145,0:145:99:0,439,5597 0/0:60,2:62:99:0,119,2476 0/0:984,0:984:99:0,2979,38634 0/0:255,6:261:99:0,624,9185 0/0:83,0:83:99:0,252,3413 0/1:82,8:90:51:51,0,3204 0/0:40,0:40:99:0,120,1666 0/0:25,0:25:78:0,78,1063 0/0:86,0:86:99:0,261,3635 0/0:75,0:75:99:0,228,3106 0/0:39,0:39:99:0,117,1595 0/0:94,8:102:75:0,75,3649 0/0:207,0:207:99:0,625,8078 0/0:156,3:159:99:0,399,6580 0/0:455,0:455:99:0,1374,19470 0/0:174,0:174:99:0,525,6595 0/0:247,16:263:99:0,263,9209 0/0:801,0:801:99:0,2414,31321 0/0:1147,0:1147:99:0,3466,45380 0/0:813,0:813:99:0,2459,32510 0/0:112,0:112:99:0,338,4163 0/0:282,0:282:99:0,847,10988 0/1:73,10:83:44:44,0,2557 0/0:2,0:2:6:0,6,79 0/0:457,0:457:99:0,1381,18595 ./. 0/0:136,15:151:41:0,41,4852 0/0:257,3:260:99:0,682,10013 0/0:159,6:165:99:0,370,6196 0/0:142,0:142:99:0,428,5331 0/1:121,14:135:42:42,0,4218 0/0:261,4:265:99:0,660,9894 0/0:204,4:208:99:0,453,7335 0/0:158,0:158:99:0,475,5810 0/0:124,0:124:99:0,375,4841 0/0:267,6:273:99:0,652,9946 0/1:235,26:261:99:128,0,8219 0/0:222,1:223:99:0,645,8525 0/0:209,0:209:99:0,635,8350 0/0:10,0:10:32:0,32,379 0/0:11,0:11:34:0,34,430 0/0:1,0:1:3:0,3,44 0/0:373,0:373:99:0,1123,14411 0/0:775,0:775:99:0,2346,30453 0/0:261,22:283:99:0,146,9075 0/0:255,11:266:99:0,499,9349 0/0:184,0:184:99:0,563,7236 0/0:187,0:187:99:0,566,7166 0/0:14,0:14:42:0,42,570 0/0:27,0:27:81:0,81,1106 ./. 0/0:1008,25:1033:99:0,2251,39185
chr13 11248 . G C 284.93 . AC=2;AF=9.346e-03;AN=214;BaseQRankSum=-1.841;ClippingRankSum=-0.001;DP=20945;ExcessHet=3.0307;FS=0.000;InbreedingCoeff=-0.0127;MLEAC=1;MLEAF=4.673e-03;MQ=43.59;MQRankSum=-0.171;QD=1.91;ReadPosRankSum=-2.124;SOR=0.542 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,141,1920 0/0:368,0:368:99:0,1131,13960 0/0:13,0:13:39:0,39,553 0/0:229,0:229:99:0,695,8364 0/0:118,0:118:99:0,369,4563 0/0:159,0:159:99:0,482,6024 0/0:17,0:17:54:0,54,695 0/0:367,1:368:99:0,1088,12932 0/0:112,0:112:99:0,341,4196 0/0:80,0:80:99:0,243,3187 0/0:62,0:62:99:0,188,2325 0/0:202,0:202:99:0,609,7076 0/0:81,4:85:99:0,132,2945 0/0:104,0:104:99:0,314,3875 0/0:111,0:111:99:0,338,4352 0/0:170,0:170:99:0,524,6748 0/0:101,1:102:99:0,296,3700 0/0:60,0:60:99:0,183,2234 0/0:23,0:23:74:0,74,850 0/0:691,3:694:99:0,2065,25267 0/0:2,0:2:6:0,6,86 0/0:23,0:23:72:0,72,943 0/0:1099,38:1137:99:0,2241,40206 0/0:63,0:63:99:0,192,2322 0/0:30,0:30:90:0,90,1219 0/0:20,0:20:60:0,60,842 0/0:5,0:5:15:0,15,211 0/0:189,1:190:99:0,581,7946 0/0:133,2:135:99:0,389,5197 0/0:272,1:273:99:0,817,11265 0/0:899,1:900:99:0,2677,34942 0/0:19,0:19:57:0,57,753 0/0:207,0:207:99:0,629,8654 0/0:195,0:195:99:0,583,6829 0/0:8,0:8:24:0,24,345 0/0:6,0:6:18:0,18,258 0/0:216,6:222:99:0,440,8178 0/0:29,0:29:87:0,87,1220 0/0:104,6:110:99:0,117,3833 0/0:18,0:18:57:0,57,758 0/0:22,0:22:78:0,78,1069 0/0:222,0:222:99:0,673,8344 0/0:61,0:61:99:0,186,2516 0/1:69,14:83:99:327,0,2608 0/0:85,0:85:99:0,253,3247 0/0:101,1:102:99:0,301,3966 0/0:238,0:238:99:0,720,8623 0/0:74,0:74:99:0,221,2744 0/1:61,5:66:5:5,0,2300 0/0:66,3:69:83:0,83,2510 0/0:71,0:71:99:0,213,2713 0/0:161,1:162:99:0,448,5833 0/0:96,1:97:99:0,280,3579 0/0:93,2:95:99:0,201,3507 0/0:257,9:266:99:0,492,9376 0/0:143,0:143:99:0,432,5307 0/0:62,1:63:99:0,178,2408 0/0:950,0:950:99:0,2876,35894 0/0:235,0:235:99:0,709,8611 0/0:70,0:70:99:0,215,2750 0/0:90,1:91:99:0,262,3459 0/0:27,0:27:85:0,85,1023 0/0:20,0:20:60:0,60,784 0/0:85,0:85:99:0,263,3333 0/0:76,1:77:99:0,221,2877 0/0:36,0:36:99:0,107,1371 0/0:91,4:95:99:0,241,3552 0/0:182,0:182:99:0,547,6735 0/0:148,0:148:99:0,452,6083 0/0:442,0:442:99:0,1331,17917 0/0:174,0:174:99:0,521,6433 0/0:264,0:264:99:0,801,9975 0/0:793,2:795:99:0,2371,29428 0/0:1146,2:1148:99:0,3424,42858 0/0:775,3:778:99:0,2315,29007 0/0:85,1:86:99:0,252,2936 0/0:258,1:259:99:0,778,9938 0/0:80,0:80:99:0,254,3246 0/0:3,0:3:9:0,9,131 0/0:472,0:472:99:0,1426,18158 0/0:5,0:5:15:0,15,194 0/0:156,0:156:99:0,474,6100 0/0:233,10:243:99:0,392,8912 0/0:162,1:163:99:0,486,6236 0/0:125,6:131:99:0,207,4565 0/0:131,0:131:99:0,396,5029 0/0:253,0:253:99:0,777,9735 0/0:209,0:209:99:0,630,7962 0/0:160,0:160:99:0,480,5607 0/0:111,8:119:78:0,78,4035 0/0:250,7:257:99:0,591,9336 0/0:264,0:264:99:0,801,10370 0/0:160,0:160:99:0,473,5397 0/0:127,2:129:99:0,367,4603 0/0:16,0:16:48:0,48,674 0/0:21,0:21:63:0,63,900 0/0:2,0:2:6:0,6,76 0/0:341,19:360:99:0,413,12108 0/0:724,34:758:99:0,1200,26555 0/0:269,2:271:99:0,806,9667 0/0:248,2:250:99:0,734,8847 0/0:185,0:185:99:0,559,6935 0/0:188,0:188:99:0,565,7066 0/0:22,0:22:66:0,66,924 0/0:36,0:36:99:0,108,1503 0/0:1,0:1:3:0,3,42 0/0:1010,2:1012:99:0,3005,38714
chr13 11264 . C A 461.93 . AC=2;AF=9.346e-03;AN=214;BaseQRankSum=0.868;ClippingRankSum=-0.001;DP=20562;ExcessHet=3.0307;FS=4.333;InbreedingCoeff=-0.0126;MLEAC=1;MLEAF=4.673e-03;MQ=43.57;MQRankSum=-0.663;QD=0.48;ReadPosRankSum=1.511;SOR=0.666 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,207,3008 0/0:330,0:330:99:0,1030,13870 0/0:21,0:21:69:0,69,1035 0/0:215,0:215:99:0,685,9241 0/0:104,0:104:99:0,335,4542 0/0:179,0:179:99:0,568,7659 0/0:25,0:25:81:0,81,1203 0/0:339,0:339:99:0,1074,14426 0/0:106,0:106:99:0,335,4434 0/0:110,0:110:99:0,342,4679 0/0:67,0:67:99:0,213,3077 0/0:180,0:180:99:0,561,7780 0/0:65,6:71:17:0,17,2397 0/0:98,0:98:99:0,309,4260 0/0:144,0:144:99:0,441,5838 0/0:166,0:166:99:0,510,7223 0/0:102,0:102:99:0,318,4373 0/0:65,0:65:99:0,216,2978 0/0:21,0:21:69:0,69,938 0/0:662,0:662:99:0,2067,28378 0/0:4,0:4:15:0,15,217 0/0:39,0:39:99:0,126,1878 0/0:1069,14:1083:99:0,2943,44677 0/0:59,0:59:99:0,184,2576 0/0:49,0:49:99:0,156,2247 0/0:26,0:26:81:0,81,1200 0/0:11,0:11:39:0,39,574 0/0:197,0:197:99:0,617,8441 0/0:132,0:132:99:0,404,5630 0/0:255,0:255:99:0,767,10790 0/0:912,0:912:99:0,2830,40418 0/0:31,0:31:96:0,96,1428 0/0:197,2:199:99:0,596,8764 0/0:187,0:187:99:0,574,7996 0/0:12,0:12:35:0,35,496 0/0:13,0:13:42:0,42,614 0/1:169,20:189:12:12,0,5998 0/0:42,0:42:99:0,132,1979 0/0:98,2:100:99:0,244,3908 0/0:21,0:21:72:0,72,1072 0/0:41,0:41:99:0,129,1935 0/0:197,0:197:99:0,622,8655 0/0:58,0:58:99:0,177,2470 0/0:71,6:77:31:0,31,2931 0/0:81,0:81:99:0,261,3678 0/0:103,0:103:99:0,319,4568 0/0:213,0:213:99:0,653,8958 0/0:80,0:80:99:0,248,3434 0/0:64,5:69:38:0,38,2451 0/0:73,4:77:79:0,79,2915 0/0:76,0:76:99:0,236,3302 0/0:132,1:133:99:0,360,5175 0/0:94,0:94:99:0,300,4230 0/0:104,0:104:99:0,314,4211 0/0:249,1:250:99:0,733,10368 0/0:138,0:138:99:0,434,5983 0/0:62,1:63:99:0,185,2547 0/0:869,0:869:99:0,2730,37862 0/0:203,0:203:99:0,628,8663 0/0:66,0:66:99:0,202,2800 0/0:95,0:95:99:0,288,4012 0/0:28,0:28:86:0,86,1190 0/0:21,0:21:66:0,66,973 0/0:88,0:88:99:0,273,3832 0/0:70,0:70:99:0,208,2919 0/0:43,0:43:99:0,132,1864 0/0:103,0:103:99:0,326,4510 0/0:169,0:169:99:0,531,7375 0/0:126,0:126:99:0,402,5747 0/0:429,0:429:99:0,1328,19014 0/0:169,0:169:99:0,523,7178 0/0:271,0:271:99:0,830,11389 0/0:847,0:847:99:0,2637,37151 0/0:1172,0:1172:99:0,3664,51641 0/0:774,0:774:99:0,2385,33380 0/0:101,1:102:99:0,292,4306 0/0:236,0:236:99:0,737,10146 0/0:78,0:78:99:0,240,3152 0/0:6,0:6:18:0,18,262 0/0:459,0:459:99:0,1407,20049 0/0:11,0:11:36:0,36,525 0/0:157,0:157:99:0,489,6495 0/0:200,20:220:11:0,11,7473 0/0:174,0:174:99:0,537,7401 0/0:111,7:118:99:0,172,4461 0/0:129,0:129:99:0,405,5668 0/0:227,0:227:99:0,713,9640 0/0:181,0:181:99:0,558,7361 0/0:143,0:143:99:0,436,6102 0/0:105,9:114:5:0,5,3959 0/0:259,11:270:99:0,522,10192 0/0:238,0:238:99:0,750,10151 0/0:150,0:150:99:0,467,6403 0/0:135,0:135:99:0,416,5761 0/0:30,0:30:99:0,99,1461 0/0:30,0:30:96:0,96,1378 0/0:11,0:11:36:0,36,540 0/0:334,15:349:99:0,574,13716 0/1:687,92:779:99:503,0,26251 0/0:278,0:278:99:0,871,11630 0/0:264,0:264:99:0,815,11035 0/0:182,0:182:99:0,573,7927 0/0:174,0:174:99:0,538,7588 0/0:36,0:36:99:0,111,1654 0/0:50,0:50:99:0,156,2254 0/0:1,0:1:3:0,3,45 0/0:963,0:963:99:0,2995,41246
chr13 11285 . C CACT 362.46 . AC=5;AF=0.023;AN=214;BaseQRankSum=1.234;ClippingRankSum=-0.001;DP=25483;ExcessHet=3.2176;FS=0.000;InbreedingCoeff=-0.0261;MLEAC=5;MLEAF=0.023;MQ=43.54;MQRankSum=-16.314;QD=4.71;ReadPosRankSum=-2.236;SOR=1.547 GT:AD:DP:GQ:PL 0/0:91,1:92:99:0,190,4005 0/0:391,0:391:99:0,1298,19102 0/1:25,3:28:93:93,0,1038 0/0:302,0:302:99:0,978,14474 0/0:196,0:196:99:0,650,9644 0/0:235,1:236:99:0,702,11046 0/0:37,1:38:72:0,72,1629 0/0:454,1:455:99:0,1412,22220 0/0:160,1:161:99:0,458,7400 0/0:132,1:133:99:0,331,6115 0/0:98,3:101:99:0,184,4493 0/0:193,0:193:99:0,602,8939 0/0:92,0:92:99:0,328,4826 0/0:159,2:161:99:0,442,7702 0/0:202,0:202:99:0,607,9569 0/0:276,0:276:99:0,885,13144 0/0:135,0:135:99:0,394,6444 0/0:110,0:110:99:0,352,5243 0/0:39,0:39:99:0,123,1832 0/0:964,2:966:99:0,3022,46070 0/1:11,2:13:51:51,0,456 0/0:59,1:60:94:0,94,2565 0/0:1593,5:1598:99:0,4998,77072 0/0:68,0:68:99:0,211,3130 0/0:70,2:72:99:0,133,3129 0/0:33,2:35:18:0,18,1440 0/1:21,4:25:99:105,0,870 0/0:222,1:223:99:0,650,10252 0/0:135,1:136:99:0,388,6364 0/0:251,0:251:99:0,834,12422 0/0:1123,1:1124:99:0,3552,53440 0/0:47,1:48:99:0,102,2115 0/0:176,0:176:99:0,521,8313 0/0:209,0:209:99:0,658,9776 0/1:15,1:16:36:36,0,666 0/0:20,1:21:18:0,18,855 0/0:264,0:264:99:0,818,12189 0/0:64,0:64:99:0,157,2925 0/0:137,0:137:99:0,460,6794 0/0:30,1:31:6:0,6,1260 0/0:56,1:57:99:0,133,2551 0/0:208,0:208:99:0,686,10228 0/0:55,0:55:99:0,172,2519 0/0:82,0:82:99:0,265,3957 0/0:89,0:89:99:0,292,4354 0/0:106,2:108:99:0,239,4717 0/0:223,0:223:99:0,707,10516 0/0:92,2:94:99:0,202,4161 0/0:65,1:66:99:0,160,2956 0/0:78,0:78:99:0,244,3624 0/0:85,0:85:99:0,271,4042 0/0:152,1:153:99:0,440,7122 0/0:120,0:120:99:0,391,5830 0/0:109,0:109:99:0,349,5114 0/0:255,2:257:99:0,747,12252 0/0:185,1:186:99:0,547,8702 0/0:63,0:63:99:0,198,2916 0/0:1155,2:1157:99:0,3639,55271 0/0:276,0:276:99:0,872,12950 0/0:67,0:67:99:0,211,3113 0/0:96,0:96:99:0,310,4612 0/0:38,0:38:99:0,126,1882 0/0:30,0:30:96:0,96,1440 0/0:88,0:88:99:0,289,4262 0/0:70,0:70:99:0,222,3287 0/0:47,2:49:73:0,73,2245 0/0:109,0:109:99:0,358,5293 0/0:205,1:206:99:0,605,9532 0/0:141,0:141:99:0,473,7054 0/0:397,1:398:99:0,1255,19249 0/0:232,0:232:99:0,644,10700 0/0:329,1:330:99:0,1008,15574 0/0:941,1:942:99:0,2884,43374 0/0:1325,1:1326:99:0,4192,62791 0/0:790,3:793:99:0,2299,36426 0/0:154,0:154:99:0,511,7560 0/0:321,2:323:99:0,960,15383 0/0:101,0:101:99:0,325,4821 0/1:7,4:11:99:189,0,279 0/0:507,4:511:99:0,1419,24017 0/0:17,1:18:18:0,18,855 0/0:207,0:207:99:0,671,9962 0/0:275,1:276:99:0,831,12959 0/0:207,0:207:99:0,643,9585 0/0:161,0:161:99:0,512,7634 0/0:149,0:149:99:0,485,7219 0/0:282,0:282:99:0,924,13732 0/0:217,0:217:99:0,692,10276 0/0:157,0:157:99:0,500,7437 0/0:158,0:158:99:0,505,7492 0/0:344,0:344:99:0,1125,16680 0/0:283,0:283:99:0,921,13636 0/0:268,3:271:99:0,765,13049 0/0:264,6:270:99:0,658,12742 0/0:40,1:41:35:0,35,1639 0/0:34,0:34:66:0,66,1575 0/0:17,0:17:51:0,51,765 0/0:451,0:451:99:0,1451,21536 0/0:968,3:971:99:0,2910,45242 0/0:364,3:367:99:0,1044,17238 0/0:353,0:353:99:0,1121,16498 0/0:197,0:197:99:0,623,9274 0/0:196,1:197:99:0,578,9219 0/0:54,2:56:80:0,80,2344 0/0:72,1:73:99:0,184,3330 0/0:2,0:2:6:0,6,90 0/0:1159,1:1160:99:0,3595,54350
chr13 11286 . G A,GCA 33024.31 . AC=38,5;AF=0.178,0.023;AN=214;BaseQRankSum=-9.150;ClippingRankSum=-0.003;DP=25834;ExcessHet=26.1170;FS=0.988;InbreedingCoeff=-0.2513;MLEAC=38,5;MLEAF=0.178,0.023;MQ=43.53;MQRankSum=-3.900;QD=3.93;ReadPosRankSum=15.595;SOR=0.540 GT:AD:DP:GQ:PL 0/1:77,14,1:92:99:283,0,2839,457,2905,3819 0/0:398,0,0:398:99:0,1196,14717,1284,15494,18998 0/2:25,0,4:29:93:93,168,1059,0,934,1038 0/0:280,19,0:299:99:0,312,10052,970,10658,13993 0/0:203,0,0:203:99:0,609,7448,614,7810,9696 0/0:224,15,1:240:99:0,230,7856,698,8282,10704 0/0:37,0,1:38:75:0,111,1436,75,1457,1710 0/0:474,1,1:476:99:0,1386,17179,1441,18082,22628 0/1:120,42,1:163:99:927,0,4254,1351,4526,6913 0/1:107,25,1:133:99:480,0,3599,796,3796,5899 0/0:101,0,3:104:99:0,306,3780,199,3861,4718 0/0:179,14,0:193:99:0,173,5722,561,6101,8645 0/1:67,30,0:97:99:799,0,2229,1101,2491,4675 0/0:161,0,2:163:99:0,486,6257,448,6479,7819 0/1:155,50,0:205:99:1221,0,5169,1770,5590,9047 0/0:263,20,0:283:99:0,146,9376,861,9897,12481 0/0:139,0,0:139:99:0,418,5178,400,5394,6541 0/0:105,7,0:112:83:0,83,3682,350,3907,5094 0/0:35,3,0:38:31:0,31,1316,124,1377,1794 0/0:983,2,2:987:99:0,2890,36326,3060,38157,46657 0/2:11,0,2:13:51:51,84,501,0,431,456 0/0:59,0,2:61:99:0,177,2205,100,2227,2655 0/0:1544,94,5:1643:99:0,1583,55132,4947,58029,74679 0/0:68,0,0:68:99:0,204,2327,211,2469,3130 0/0:70,0,2:72:99:0,213,2784,139,2821,3219 0/1:30,4,2:36:69:69,0,1042,82,1027,1383 0/2:21,0,4:25:99:99,162,959,0,825,954 0/1:154,68,1:223:99:1990,0,5793,2529,6107,9717 0/0:135,0,1:136:99:0,407,5529,379,5629,6255 0/1:171,78,0:249:99:2106,0,6331,2825,6823,11723 0/0:1089,37,1:1127:99:0,2085,42031,3526,43868,52477 0/0:47,0,1:48:99:0,141,1858,115,1903,2295 0/0:171,0,1:172:99:0,518,6882,476,7033,8235 0/0:212,0,0:212:99:0,641,7232,668,7697,9956 0/2:14,1,1:16:36:36,53,553,0,496,638 0/1:16,4,1:21:94:94,0,614,107,599,795 0/1:205,57,0:262:99:1112,0,6598,1880,7188,11588 0/0:65,0,1:66:99:0,199,2596,169,2671,3105 0/1:96,38,0:134:99:837,0,3397,1261,3703,6362 0/0:30,0,1:31:9:0,90,1140,9,1115,1305 0/0:57,0,1:58:99:0,172,2294,136,2342,2610 0/0:215,0,0:215:99:0,644,7500,689,7944,10305 0/1:37,16,0:53:99:417,0,1313,571,1423,2371 0/1:58,21,0:79:99:539,0,2094,784,2269,3850 0/0:91,0,0:91:99:0,274,3681,289,3813,4320 0/0:105,0,2:107:99:0,314,4087,259,4178,5030 0/0:227,0,0:227:99:0,681,7787,722,8273,10755 0/0:90,0,2:92:99:0,274,3443,199,3512,4118 0/1:35,26,1:62:99:702,0,1225,833,1324,2774 0/1:54,22,0:76:99:564,0,1889,781,2040,3364 0/0:86,0,0:86:99:0,257,3173,265,3328,3956 0/1:107,49,1:157:99:1057,0,3161,1469,3499,6728 0/0:122,0,0:122:99:0,368,4623,382,4837,5704 0/1:91,16,0:107:99:143,0,3199,480,3420,4810 0/1:227,33,2:262:99:333,0,7545,1054,8004,11531 0/0:190,1,1:192:99:0,538,7412,544,7652,8657 0/1:49,11,0:60:99:193,0,1552,380,1686,2734 0/0:1174,1,2:1177:99:0,3495,43731,3662,45895,55655 0/0:254,20,0:274:87:0,87,7559,855,8216,12345 0/0:67,0,0:67:99:0,204,2632,220,2747,3280 0/1:86,10,0:96:38:38,0,3148,339,3318,4326 0/0:39,0,0:39:99:0,116,1430,126,1504,1882 0/0:32,0,0:32:96:0,96,1240,102,1293,1530 0/1:83,8,0:91:40:40,0,2873,318,3036,3989 0/0:69,0,0:69:99:0,208,2619,229,2748,3415 0/0:51,0,2:53:73:0,153,1914,73,1920,2250 0/1:100,11,0:111:85:85,0,3563,430,3768,4965 0/0:203,0,1:204:99:0,611,7809,617,8125,9712 0/1:113,28,0:141:99:591,0,4092,1014,4337,6544 0/0:397,0,1:398:99:0,1210,16686,1243,17024,19137 0/0:233,0,0:233:99:0,697,8555,656,8926,10880 0/1:302,31,1:334:75:75,0,10588,1065,11161,14662 0/0:935,1,1:937:99:0,2788,36130,2896,37669,43591 0/0:1327,0,1:1328:99:0,3996,51990,4219,54174,63298 0/0:783,1,4:788:99:0,2354,30114,2308,31322,36597 0/0:158,0,0:158:99:0,479,5997,511,6297,7585 0/0:321,9,2:332:99:0,713,12071,966,12569,15322 0/1:83,20,0:103:99:408,0,2915,714,3113,4514 0/2:5,2,5:12:99:188,130,307,0,113,244 0/0:515,0,5:520:99:0,1548,20415,1419,21064,24045 0/0:19,0,1:20:18:0,57,723,18,714,855 0/1:161,48,0:209:99:944,0,5665,1569,6105,9334 0/1:194,87,1:282:99:2033,0,6375,2757,6947,12133 0/0:197,13,0:210:99:0,149,7229,643,7585,9367 0/1:132,26,0:158:99:351,0,4021,845,4410,7263 0/0:145,7,0:152:99:0,239,4925,482,5270,7044 0/1:260,30,0:290:51:51,0,8357,973,9016,13083 0/1:166,54,0:220:99:1028,0,5197,1694,5714,9748 0/0:159,0,0:159:99:0,477,5402,503,5751,7482 0/1:142,21,0:163:99:231,0,4902,726,5232,7227 0/1:234,118,0:352:99:2966,0,7605,3973,8409,15549 0/1:220,65,0:285:99:1486,0,7644,2335,8222,12868 0/0:280,0,3:283:99:0,844,10753,795,11154,13499 0/0:271,1,5:277:99:0,779,10470,637,10749,12865 0/0:40,0,2:42:39:0,118,1471,39,1450,1755 0/1:32,4,0:36:41:41,0,1138,107,1170,1512 0/0:16,1,0:17:7:0,7,597,49,621,721 0/1:392,64,0:456:99:980,0,13441,2354,14391,20277 0/1:715,252,2:969:99:5956,0,24195,8605,26265,43125 0/1:307,55,3:365:99:719,0,10222,1709,10893,16255 0/0:338,14,0:352:99:0,584,12434,1124,13118,16374 0/0:199,0,0:199:99:0,596,6884,632,7292,9409 0/0:197,4,1:202:99:0,509,6833,585,7212,9264 0/0:54,0,2:56:88:0,162,2068,88,2082,2475 0/0:73,0,1:74:99:0,219,2857,202,2953,3600 0/0:2,0,0:2:6:0,6,82,6,85,90 0/1:1042,126,1:1169:99:1023,0,37411,4556,39457,52121
chr13 11291 . A ACCAAGAGCACAGTG 388.14 . AC=7;AF=0.033;AN=214;BaseQRankSum=-0.598;ClippingRankSum=-0.001;DP=27101;ExcessHet=3.4499;FS=0.000;InbreedingCoeff=-0.0341;MLEAC=6;MLEAF=0.028;MQ=43.50;MQRankSum=-18.847;QD=2.64;ReadPosRankSum=-3.990;SOR=1.410 GT:AD:DP:GQ:PL 0/0:99,2:101:99:0,220,4455 0/0:401,0:401:99:0,1225,18881 0/1:26,4:30:99:132,0,1077 0/0:321,0:321:99:0,1005,15030 0/0:231,2:233:99:0,614,10350 0/0:246,1:247:99:0,684,11385 0/0:40,1:41:90:0,90,1935 0/0:509,2:511:99:0,1502,23625 0/0:175,1:176:99:0,488,7866 0/0:149,2:151:99:0,377,6795 0/0:111,3:114:99:0,211,4905 0/0:198,1:199:99:0,572,9135 0/0:111,0:111:99:0,280,5355 0/0:170,2:172:99:0,428,8093 0/0:225,1:226:99:0,617,10395 0/0:302,0:302:99:0,930,13896 0/0:157,1:158:99:0,350,6975 0/0:119,0:119:99:0,334,5575 0/0:45,0:45:93:0,93,1980 0/0:1016,2:1018:99:0,3050,47333 0/1:11,2:13:48:48,0,498 0/0:71,3:74:91:0,91,3105 0/0:1743,5:1748:99:0,5172,80226 0/0:70,0:70:99:0,217,3240 0/0:76,2:78:99:0,151,3420 0/1:39,3:42:9:9,0,1629 0/1:24,4:28:93:93,0,1038 0/0:237,1:238:99:0,689,10881 0/0:144,1:145:99:0,416,6752 0/0:266,0:266:99:0,834,12465 0/0:1165,1:1166:99:0,3606,54437 0/0:57,1:58:99:0,133,2565 0/0:172,2:174:99:0,458,7992 0/0:215,0:215:99:0,674,10080 0/1:18,2:20:30:30,0,750 0/1:20,1:21:24:24,0,834 0/0:273,0:273:99:0,840,12555 0/0:73,1:74:99:0,142,3285 0/0:148,0:148:99:0,464,6930 0/0:32,2:34:12:0,12,1350 0/0:64,1:65:99:0,151,2835 0/0:222,0:222:99:0,698,10440 0/0:62,0:62:99:0,148,2755 0/0:90,0:90:99:0,274,4088 0/0:96,0:96:99:0,298,4455 0/0:110,2:112:99:0,262,5085 0/0:226,0:226:99:0,722,10800 0/0:93,2:95:99:0,220,4404 0/0:71,1:72:99:0,175,3195 0/0:77,0:77:99:0,247,3690 0/0:85,0:85:99:0,271,4017 0/0:156,1:157:99:0,443,7200 0/0:127,0:127:99:0,391,5841 0/0:110,0:110:99:0,346,5175 0/0:280,2:282:99:0,774,12735 0/0:193,1:194:99:0,560,8955 0/0:61,0:61:99:0,196,2916 0/0:1246,2:1248:99:0,3739,57635 0/0:274,0:274:99:0,852,12725 0/0:70,0:70:99:0,229,3406 0/0:101,0:101:99:0,316,4722 0/0:45,0:45:99:0,150,2212 0/0:34,0:34:99:0,102,1530 0/0:92,0:92:99:0,292,4356 0/0:72,0:72:99:0,220,3276 0/0:54,2:56:82:0,82,2366 0/0:113,0:113:99:0,367,5485 0/0:204,1:205:99:0,551,9400 0/0:153,0:153:99:0,470,7020 0/0:421,1:422:99:0,1273,19620 0/0:244,2:246:99:0,666,11107 0/0:345,1:346:99:0,1030,15975 0/0:942,1:943:99:0,2902,43965 0/0:1381,1:1382:99:0,3927,63906 0/0:788,4:792:99:0,2306,36791 0/0:177,0:177:99:0,548,8181 0/0:337,2:339:99:0,913,15381 0/0:110,0:110:99:0,307,5175 0/1:9,5:14:99:183,0,363 0/0:533,5:538:99:0,1470,24885 0/0:21,1:22:21:0,21,900 0/0:218,0:218:99:0,590,9990 0/0:288,1:289:99:0,840,13140 0/0:220,0:220:99:0,596,10080 0/0:167,1:168:99:0,491,7920 0/0:160,0:160:99:0,506,7558 0/0:314,0:314:99:0,978,14625 0/0:230,0:230:99:0,716,10710 0/0:168,0:168:99:0,533,7965 0/0:178,0:178:99:0,548,8181 0/0:375,0:375:99:0,1147,17124 0/0:308,0:308:99:0,912,14184 0/0:316,3:319:99:0,744,14589 0/0:306,5:311:99:0,732,13841 0/0:48,2:50:76:0,76,2295 0/0:43,1:44:90:0,90,1935 0/0:18,0:18:54:0,54,810 0/0:481,1:482:99:0,1448,22230 0/0:1011,2:1013:99:0,3065,46980 0/0:388,3:391:99:0,1090,18045 0/0:375,1:376:99:0,1123,17370 0/0:209,0:209:99:0,605,9607 0/0:213,1:214:99:0,581,9855 0/0:61,2:63:64:0,64,2700 0/0:86,1:87:99:0,226,3960 0/0:3,0:3:9:0,9,135 0/0:1201,2:1203:99:0,3657,55773
chr13 11295 . C T 380.66 . AC=6;AF=0.028;AN=214;BaseQRankSum=1.596;ClippingRankSum=-0.001;DP=27517;ExcessHet=3.3228;FS=0.000;InbreedingCoeff=-0.0298;MLEAC=6;MLEAF=0.028;MQ=43.48;MQRankSum=-21.546;QD=2.88;ReadPosRankSum=-7.455;SOR=0.815 GT:AD:DP:GQ:PL 0/0:102,1:103:99:0,271,4635 0/0:402,1:403:99:0,1225,18900 0/1:27,5:32:99:129,0,1119 0/0:328,0:328:99:0,1032,15435 0/0:238,2:240:99:0,657,10980 0/0:258,2:260:99:0,726,12015 0/0:44,1:45:93:0,93,1980 0/0:517,2:519:99:0,1526,23985 0/0:177,1:178:99:0,509,8190 0/0:155,2:157:99:0,395,7065 0/0:110,3:113:99:0,223,5085 0/0:190,1:191:99:0,557,8910 0/0:118,2:120:99:0,286,5445 0/0:177,3:180:99:0,425,8100 0/0:233,2:235:99:0,641,10755 0/0:307,0:307:99:0,957,14310 0/0:157,3:160:99:0,377,7380 0/0:123,1:124:99:0,331,5530 0/0:47,1:48:99:0,99,2070 0/0:1037,3:1040:99:0,3032,47653 0/1:13,2:15:45:45,0,540 0/0:72,3:75:99:0,100,3240 0/0:1740,5:1745:99:0,5187,80460 0/0:75,0:75:99:0,226,3375 0/0:78,2:80:99:0,157,3510 0/0:41,3:44:16:0,16,1980 0/1:25,4:29:93:93,0,1038 0/0:236,1:237:99:0,677,10710 0/0:146,1:147:99:0,413,6750 0/0:271,0:271:99:0,846,12645 0/0:1193,1:1194:99:0,3688,55710 0/0:58,1:59:99:0,133,2565 0/0:182,2:184:99:0,491,8505 0/0:214,0:214:99:0,692,10350 0/1:18,2:20:27:27,0,792 0/1:20,2:22:21:21,0,876 0/0:277,0:277:99:0,852,12735 0/0:75,2:77:99:0,151,3420 0/0:148,0:148:99:0,464,6930 0/0:32,2:34:12:0,12,1350 0/0:64,1:65:99:0,154,2880 0/0:224,0:224:99:0,698,10440 0/0:63,1:64:99:0,154,2854 0/0:90,0:90:99:0,280,4185 0/0:102,0:102:99:0,319,4770 0/0:113,2:115:99:0,265,5130 0/0:223,0:223:99:0,704,10530 0/0:99,2:101:99:0,223,4500 0/0:68,1:69:99:0,175,3195 0/0:82,0:82:99:0,250,3735 0/0:83,0:83:99:0,262,3915 0/0:156,1:157:99:0,455,7380 0/0:129,0:129:99:0,406,6075 0/0:114,0:114:99:0,352,5265 0/0:277,2:279:99:0,771,12690 0/0:197,1:198:99:0,581,9270 0/0:64,0:64:99:0,199,2970 0/0:1262,3:1265:99:0,3826,58915 0/0:275,0:275:99:0,882,13185 0/0:79,0:79:99:0,256,3825 0/0:99,0:99:99:0,316,4725 0/0:48,0:48:99:0,157,2340 0/0:34,0:34:99:0,114,1710 0/0:94,0:94:99:0,295,4410 0/0:72,0:72:99:0,220,3285 0/0:57,2:59:94:0,94,2565 0/0:119,0:119:99:0,367,5485 0/0:201,2:203:99:0,557,9495 0/0:152,0:152:99:0,482,7200 0/0:429,1:430:99:0,1298,19980 0/0:242,2:244:99:0,678,11287 0/0:349,1:350:99:0,1051,16290 0/0:960,1:961:99:0,2923,44280 0/0:1407,9:1416:99:0,3969,64575 0/0:799,4:803:99:0,2330,37170 0/0:182,0:182:99:0,557,8313 0/0:338,3:341:99:0,886,15570 0/0:109,1:110:99:0,304,5130 0/1:9,5:14:99:180,0,405 0/0:540,5:545:99:0,1497,25290 0/0:23,1:24:36:0,36,1125 0/0:218,2:220:99:0,593,10035 0/0:290,1:291:99:0,861,13455 0/0:219,2:221:99:0,599,10125 0/0:172,1:173:99:0,500,8055 0/0:159,0:159:99:0,500,7470 0/0:314,0:314:99:0,1002,14985 0/0:237,0:237:99:0,756,11295 0/0:174,0:174:99:0,536,8010 0/0:178,0:178:99:0,557,8325 0/0:373,0:373:99:0,1171,17505 0/0:311,1:312:99:0,936,14553 0/0:327,6:333:99:0,772,15019 0/0:316,5:321:99:0,762,14310 0/0:53,2:55:82:0,82,2385 0/0:44,1:45:93:0,93,1980 0/0:18,0:18:57:0,57,855 0/0:480,1:481:99:0,1490,22860 0/0:1035,2:1037:99:0,3149,48240 0/0:395,3:398:99:0,1108,18315 0/0:384,1:385:99:0,1171,18090 0/0:206,1:207:99:0,599,9540 0/0:221,2:223:99:0,608,10260 0/0:64,3:67:79:0,79,2925 0/0:92,1:93:99:0,235,4095 0/0:3,0:3:9:0,9,135 0/0:1195,2:1197:99:0,3670,56025
chr13 11299 . C A 363.57 . AC=6;AF=0.028;AN=214;BaseQRankSum=6.249;ClippingRankSum=-0.001;DP=27908;ExcessHet=3.3228;FS=0.000;InbreedingCoeff=-0.0294;MLEAC=6;MLEAF=0.028;MQ=43.47;MQRankSum=-21.610;QD=2.62;ReadPosRankSum=-6.299;SOR=0.768 GT:AD:DP:GQ:PL 0/0:108,1:109:99:0,283,4815 0/0:416,1:417:99:0,1258,19395 0/1:27,5:32:99:126,0,1161 0/0:341,0:341:99:0,1057,15795 0/0:246,2:248:99:0,693,11520 0/0:271,2:273:99:0,741,12240 0/0:47,1:48:99:0,99,2070 0/0:533,2:535:99:0,1568,24580 0/0:183,1:184:99:0,524,8415 0/0:160,2:162:99:0,404,7200 0/0:120,3:123:99:0,244,5400 0/0:191,1:192:99:0,539,8640 0/0:126,2:128:99:0,316,5895 0/0:185,3:188:99:0,452,8505 0/0:243,2:245:99:0,669,11160 0/0:314,0:314:99:0,966,14445 0/0:165,3:168:99:0,386,7515 0/0:123,1:124:99:0,346,5742 0/0:47,1:48:99:0,99,2070 0/0:1042,4:1046:99:0,3059,48058 0/1:13,2:15:45:45,0,540 0/0:75,3:78:99:0,109,3375 0/0:1746,5:1751:99:0,5181,80370 0/0:74,0:74:99:0,235,3510 0/0:82,2:84:99:0,169,3690 0/0:49,3:52:28:0,28,2160 0/1:25,4:29:93:93,0,1038 0/0:232,1:233:99:0,632,10620 0/0:145,1:146:99:0,407,6660 0/0:272,0:272:99:0,843,12600 0/0:1192,1:1193:99:0,3654,55215 0/0:60,1:61:99:0,145,2745 0/0:184,2:186:99:0,491,8505 0/0:218,0:218:99:0,674,10080 0/1:21,2:23:18:18,0,918 0/1:21,2:23:21:21,0,876 0/0:274,0:274:99:0,837,12510 0/0:79,2:81:99:0,154,3465 0/0:149,0:149:99:0,464,6930 0/0:34,2:36:18:0,18,1440 0/0:65,1:66:99:0,157,2925 0/0:227,0:227:99:0,695,10395 0/0:62,1:63:99:0,151,2809 0/0:91,0:91:99:0,283,4230 0/0:101,0:101:99:0,307,4590 0/0:114,2:116:99:0,262,5085 0/0:218,0:218:99:0,674,10080 0/0:101,2:103:99:0,226,4545 0/0:66,1:67:99:0,163,3015 0/0:80,0:80:99:0,241,3600 0/0:82,0:82:99:0,256,3825 0/0:157,1:158:99:0,437,7110 0/0:135,0:135:99:0,418,6255 0/0:116,0:116:99:0,358,5355 0/0:269,2:271:99:0,744,12285 0/0:204,1:205:99:0,599,9540 0/0:63,0:63:99:0,193,2880 0/0:1272,3:1275:99:0,3816,58742 0/0:283,0:283:99:0,867,12960 0/0:82,0:82:99:0,265,3960 0/0:98,0:98:99:0,313,4680 0/0:52,0:52:99:0,157,2340 0/0:36,0:36:99:0,111,1665 0/0:95,0:95:99:0,304,4545 0/0:69,0:69:99:0,214,3195 0/0:57,2:59:97:0,97,2610 0/0:122,0:122:99:0,376,5620 0/0:210,2:212:99:0,569,9675 0/0:155,0:155:99:0,497,7425 0/0:424,1:425:99:0,1316,20250 0/0:248,2:250:99:0,690,11475 0/0:353,1:354:99:0,1042,16155 0/0:966,1:967:99:0,2956,44775 0/0:1409,9:1418:99:0,3996,64980 0/0:807,4:811:99:0,2361,37620 0/0:186,0:186:99:0,578,8628 0/0:343,4:347:99:0,904,15840 0/0:113,1:114:99:0,304,5130 0/1:12,5:17:99:174,0,489 0/0:550,5:555:99:0,1494,25245 0/0:27,1:28:45:0,45,1260 0/0:217,2:219:99:0,584,9900 0/0:292,1:293:99:0,879,13725 0/0:222,2:224:99:0,590,9990 0/0:172,1:173:99:0,494,7965 0/0:159,0:159:99:0,494,7380 0/0:321,0:321:99:0,972,14535 0/0:246,0:246:99:0,756,11295 0/0:177,0:177:99:0,554,8280 0/0:181,0:181:99:0,555,8322 0/0:380,0:380:99:0,1198,17910 0/0:318,1:319:99:0,942,14670 0/0:341,5:346:99:0,811,15604 0/0:329,5:334:99:0,823,15210 0/0:56,2:58:91:0,91,2520 0/0:48,1:49:99:0,109,2205 0/0:19,0:19:57:0,57,855 0/0:490,1:491:99:0,1493,22905 0/0:1052,2:1054:99:0,3215,49230 0/0:396,3:399:99:0,1096,18135 0/0:391,1:392:99:0,1168,18045 0/0:205,1:206:99:0,590,9405 0/0:222,2:224:99:0,602,10170 0/0:70,3:73:91:0,91,3105 0/0:93,1:94:99:0,238,4140 0/0:3,0:3:9:0,9,135 0/0:1204,2:1206:99:0,3685,56250
chr13 11309 . G T 320.60 . AC=6;AF=0.028;AN=214;BaseQRankSum=2.539;ClippingRankSum=-0.001;DP=28792;ExcessHet=3.3228;FS=0.000;InbreedingCoeff=-0.0288;MLEAC=5;MLEAF=0.023;MQ=43.47;MQRankSum=-21.050;QD=2.10;ReadPosRankSum=-2.158;SOR=0.866 GT:AD:DP:GQ:PL 0/0:115,1:116:99:0,304,5130 0/0:439,1:440:99:0,1325,20385 0/1:30,5:35:99:120,0,1245 0/0:361,0:361:99:0,1120,16740 0/0:300,2:302:99:0,837,13680 0/0:285,2:287:99:0,795,13043 0/0:48,1:49:99:0,102,2115 0/0:543,2:545:99:0,1598,25030 0/0:200,1:201:99:0,578,9225 0/0:175,2:177:99:0,473,8235 0/0:123,2:125:99:0,292,5535 0/0:187,1:188:99:0,554,8865 0/0:133,2:135:99:0,349,6390 0/0:189,3:192:99:0,473,8813 0/0:269,2:271:99:0,750,12375 0/0:328,0:328:99:0,1014,15165 0/0:170,3:173:99:0,398,7695 0/0:127,0:127:99:0,379,6238 0/0:48,1:49:99:0,109,2205 0/0:1049,4:1053:99:0,3107,48780 0/1:14,2:16:42:42,0,582 0/0:80,3:83:99:0,124,3600 0/0:1746,5:1751:99:0,5220,80947 0/0:73,0:73:99:0,238,3555 0/0:89,2:91:99:0,199,4140 0/0:57,3:60:55:0,55,2565 0/1:29,4:33:72:72,0,1332 0/0:245,1:246:99:0,708,11160 0/0:154,1:155:99:0,434,7065 0/0:292,0:292:99:0,891,13320 0/0:1196,1:1197:99:0,3691,55755 0/0:62,1:63:99:0,148,2790 0/0:179,2:181:99:0,476,8280 0/0:217,0:217:99:0,692,10350 0/1:24,2:26:12:12,0,1002 0/1:24,2:26:12:12,0,1002 0/0:269,0:269:99:0,843,12600 0/0:87,2:89:99:0,181,3870 0/0:155,0:155:99:0,482,7200 0/0:37,2:39:27:0,27,1575 0/0:70,1:71:99:0,169,3105 0/0:236,0:236:99:0,722,10800 0/0:66,1:67:99:0,166,3060 0/0:91,0:91:99:0,274,4095 0/0:113,0:113:99:0,343,5130 0/0:121,2:123:99:0,283,5400 0/0:202,0:202:99:0,638,9540 0/0:107,2:109:99:0,250,4905 0/0:68,1:69:99:0,163,3015 0/0:79,0:79:99:0,250,3735 0/0:87,0:87:99:0,268,4005 0/0:148,1:149:99:0,431,7020 0/0:140,0:140:99:0,430,6435 0/0:131,0:131:99:0,412,6165 0/0:277,2:279:99:0,780,12825 0/0:208,1:209:99:0,611,9720 0/0:72,0:72:99:0,223,3330 0/0:1292,3:1295:99:0,3855,59301 0/0:280,0:280:99:0,876,13095 0/0:90,0:90:99:0,274,4095 0/0:107,0:107:99:0,337,5040 0/0:57,0:57:99:0,172,2565 0/0:39,0:39:99:0,117,1755 0/0:104,0:104:99:0,316,4725 0/0:74,0:74:99:0,229,3420 0/0:62,2:64:99:0,106,2745 0/0:130,0:130:99:0,403,6030 0/0:227,1:228:99:0,656,10395 0/0:165,0:165:99:0,506,7560 0/0:452,1:453:99:0,1352,20790 0/0:257,2:259:99:0,723,11970 0/0:366,1:367:99:0,1084,16785 0/0:1012,1:1013:99:0,3092,46800 0/0:1473,8:1481:99:0,4185,67230 0/0:829,4:833:99:0,2430,38655 0/0:195,0:195:99:0,611,9109 0/0:352,4:356:99:0,925,16155 0/0:113,1:114:99:0,325,5445 0/1:12,5:17:99:171,0,531 0/0:552,5:557:99:0,1512,25515 0/0:30,1:31:51:0,51,1350 0/0:230,2:232:99:0,644,10774 0/0:300,1:301:99:0,891,13905 0/0:236,2:238:99:0,654,10935 0/0:171,1:172:99:0,497,8010 0/0:157,0:157:99:0,503,7515 0/0:339,0:339:99:0,1057,15795 0/0:264,0:264:99:0,822,12285 0/0:185,0:185:99:0,566,8460 0/0:182,1:183:99:0,567,8486 0/0:383,0:383:99:0,1186,17730 0/0:322,1:323:99:0,960,14940 0/0:353,5:358:99:0,892,16237 0/0:349,5:354:99:0,895,16266 0/0:66,1:67:99:0,166,3060 0/0:63,1:64:99:0,148,2790 0/0:19,0:19:60:0,60,900 0/0:498,1:499:99:0,1514,23185 0/0:1078,1:1079:99:0,3254,49789 0/0:406,2:408:99:0,1183,18855 0/0:393,1:394:99:0,1177,18180 0/0:202,1:203:99:0,593,9450 0/0:217,2:219:99:0,596,10080 0/0:78,2:80:99:0,157,3510 0/0:99,0:99:99:0,307,4590 0/0:3,0:3:9:0,9,135 0/0:1228,2:1230:99:0,3748,57195
chr13 11313 . G C 1584.61 . AC=9;AF=0.042;AN=214;BaseQRankSum=-1.662;ClippingRankSum=-0.001;DP=28898;ExcessHet=3.7713;FS=0.000;InbreedingCoeff=-0.0454;MLEAC=9;MLEAF=0.042;MQ=43.46;MQRankSum=0.871;QD=1.02;ReadPosRankSum=1.293;SOR=0.631 GT:AD:DP:GQ:PL 0/0:112,6:118:99:0,114,4066 0/1:405,38:443:99:101,0,14371 0/0:32,2:34:22:0,22,1118 0/0:364,0:364:99:0,1095,13965 0/0:286,11:297:99:0,501,10554 0/0:286,3:289:99:0,759,10791 0/0:47,0:47:99:0,141,1843 0/0:530,12:542:99:0,1224,20485 0/0:202,0:202:99:0,611,7978 0/0:181,4:185:99:0,404,6842 0/0:124,2:126:99:0,297,4731 0/0:176,6:182:99:0,354,6492 0/0:134,0:134:99:0,403,4921 0/0:185,0:185:99:0,554,6786 0/0:275,0:275:99:0,828,10604 0/0:312,15:327:99:0,375,11743 0/0:173,0:173:99:0,520,6726 0/0:126,0:126:99:0,378,4713 0/0:50,1:51:99:0,111,1731 0/0:996,48:1044:99:0,1366,36162 0/1:14,2:16:38:38,0,536 0/0:87,0:87:99:0,261,3393 0/0:1658,72:1730:99:0,2582,62877 0/0:70,6:76:52:0,52,2122 0/0:95,0:95:99:0,285,3668 0/0:61,0:61:99:0,184,2371 0/0:36,0:36:99:0,108,1471 0/0:243,0:243:99:0,733,10293 0/0:153,3:156:99:0,341,6128 0/0:297,1:298:99:0,885,12373 0/0:1133,58:1191:99:0,1234,43911 0/1:54,10:64:99:209,0,1910 0/0:176,7:183:99:0,352,7060 0/1:195,22:217:99:125,0,6317 0/0:26,0:26:78:0,78,1054 0/0:26,0:26:78:0,78,1022 0/1:231,38:269:99:513,0,8432 0/0:87,2:89:99:0,186,3297 0/0:155,0:155:99:0,465,6109 0/0:36,3:39:8:0,8,1210 0/1:55,16:71:99:386,0,1965 0/0:222,7:229:99:0,459,7579 0/0:68,0:68:99:0,205,2816 0/0:90,0:90:99:0,276,3805 0/0:113,0:113:99:0,340,4607 0/0:117,7:124:99:0,182,4546 0/0:185,12:197:99:0,114,6195 0/0:111,0:111:99:0,333,4460 0/0:70,0:70:99:0,213,2841 0/0:82,0:82:99:0,246,3148 0/0:89,0:89:99:0,268,3572 0/0:148,0:148:99:0,444,5434 0/0:138,1:139:99:0,416,5664 0/0:139,0:139:99:0,420,5371 0/0:277,0:277:99:0,835,10576 0/0:209,0:209:99:0,629,8476 0/0:77,0:77:99:0,231,3054 0/0:1199,84:1283:99:0,761,42445 0/0:271,9:280:99:0,520,8797 0/0:92,0:92:99:0,276,3659 0/0:105,6:111:99:0,129,3959 0/1:48,6:54:81:81,0,1804 0/0:39,1:40:78:0,78,1588 0/0:95,9:104:14:0,14,3592 0/0:73,3:76:99:0,122,2865 0/0:63,1:64:99:0,151,2530 0/0:127,4:131:99:0,253,5094 0/0:203,15:218:74:0,74,7276 0/0:165,0:165:99:0,504,6890 0/0:441,14:455:99:0,868,18278 0/0:261,0:261:99:0,785,10178 0/0:348,10:358:99:0,677,13389 0/0:980,49:1029:99:0,1395,37770 0/0:1433,66:1499:99:0,2104,55963 0/0:820,27:847:99:0,1514,32023 0/0:203,0:203:99:0,606,7480 0/0:343,5:348:99:0,896,13377 0/0:118,0:118:99:0,354,4513 0/0:18,0:18:54:0,54,756 0/0:525,39:564:99:0,167,19605 0/0:33,0:33:99:0,99,1302 0/0:241,0:241:99:0,723,9348 0/0:297,0:297:99:0,900,12049 0/0:241,4:245:99:0,582,9447 0/0:169,0:169:99:0,508,5933 0/0:158,0:158:99:0,473,5729 0/1:306,37:343:99:147,0,9892 0/0:270,0:270:99:0,810,9738 0/0:183,0:183:99:0,549,6254 0/0:191,0:191:99:0,573,7618 0/0:382,1:383:99:0,1141,14912 0/0:313,0:313:99:0,944,12713 0/0:360,0:360:99:0,1072,13178 0/0:360,7:367:99:0,809,13303 0/0:72,1:73:99:0,174,2768 0/0:64,0:64:99:0,192,2497 0/0:19,0:19:60:0,60,730 0/0:502,0:502:99:0,1516,19904 0/0:1072,6:1078:99:0,3053,42930 0/0:409,0:409:99:0,1230,15948 0/0:392,0:392:99:0,1177,15380 0/0:189,12:201:99:0,168,6174 0/0:204,11:215:99:0,263,7015 0/1:72,10:82:99:133,0,2666 0/0:97,4:101:99:0,149,3819 0/0:3,0:3:9:0,9,124 0/0:1204,13:1217:99:0,3189,48695
chr13 11324 . GGC G 239 . AC=4;AF=0.019;AN=214;BaseQRankSum=4.529;ClippingRankSum=-0.001;DP=30375;ExcessHet=3.1341;FS=0.000;InbreedingCoeff=-0.0211;MLEAC=3;MLEAF=0.014;MQ=43.43;MQRankSum=-20.135;QD=2.13;ReadPosRankSum=2.848;SOR=0.764 GT:AD:DP:GQ:PL 0/0:129,1:130:99:0,370,6074 0/0:511,1:512:99:0,1563,23806 0/1:28,5:33:99:126,0,1161 0/0:391,0:391:99:0,1205,17931 0/0:328,2:330:99:0,928,15002 0/0:322,1:323:99:0,966,14911 0/0:55,0:55:99:0,169,2520 0/0:569,2:571:99:0,1695,26418 0/0:214,1:215:99:0,629,9905 0/0:204,2:206:99:0,560,9521 0/0:142,2:144:99:0,368,6609 0/0:184,1:185:99:0,539,8586 0/0:145,2:147:99:0,377,6778 0/0:197,1:198:99:0,563,8947 0/0:298,2:300:99:0,843,13656 0/0:341,0:341:99:0,1069,15880 0/0:180,3:183:99:0,442,8270 0/0:143,0:143:99:0,455,6758 0/0:64,1:65:99:0,151,2802 0/0:1073,4:1077:99:0,3159,49405 0/1:18,2:20:30:30,0,750 0/0:105,3:108:99:0,194,4537 0/0:1705,3:1708:99:0,5183,79500 0/0:75,0:75:99:0,250,3689 0/0:109,2:111:99:0,248,4861 0/0:70,3:73:94:0,94,3125 0/1:37,3:40:12:12,0,1576 0/0:251,1:252:99:0,746,11679 0/0:172,1:173:99:0,494,7944 0/0:308,0:308:99:0,963,14292 0/0:1235,1:1236:99:0,3813,57214 0/0:67,1:68:99:0,163,3007 0/0:182,2:184:99:0,492,8334 0/0:218,0:218:99:0,689,10242 0/0:27,2:29:3:0,3,1205 0/0:31,2:33:15:0,15,1359 0/0:289,0:289:99:0,879,13129 0/0:110,2:112:99:0,256,4987 0/0:163,0:163:99:0,509,7552 0/0:37,2:39:34:0,34,1657 0/0:75,1:76:99:0,187,3375 0/0:236,0:236:99:0,735,10972 0/0:73,1:74:99:0,181,3269 0/0:96,0:96:99:0,307,4574 0/0:120,0:120:99:0,371,5519 0/0:133,1:134:99:0,392,6378 0/0:198,0:198:99:0,614,9169 0/0:117,2:119:99:0,280,5311 0/0:68,1:69:99:0,171,3098 0/0:82,0:82:99:0,259,3868 0/0:95,0:95:99:0,289,4285 0/0:150,1:151:99:0,437,7080 0/0:150,0:150:99:0,467,6928 0/0:147,0:147:99:0,457,6763 0/0:271,0:271:99:0,876,12984 0/0:215,1:216:99:0,632,10008 0/0:81,0:81:99:0,253,3729 0/0:1328,3:1331:99:0,4038,61855 0/0:288,0:288:99:0,894,13327 0/0:102,0:102:99:0,316,4716 0/0:125,0:125:99:0,379,5661 0/0:56,0:56:99:0,175,2610 0/0:44,0:44:99:0,132,1972 0/0:105,0:105:99:0,328,4870 0/0:85,0:85:99:0,262,3897 0/0:67,2:69:99:0,128,2987 0/0:141,0:141:99:0,440,6528 0/0:222,1:223:99:0,659,10397 0/0:192,0:192:99:0,602,8930 0/0:489,1:490:99:0,1464,22402 0/0:266,2:268:99:0,768,12535 0/0:373,1:374:99:0,1138,17514 0/0:1063,1:1064:99:0,3284,49474 0/0:1542,8:1550:99:0,4480,71249 0/0:896,4:900:99:0,2608,41136 0/0:231,0:231:99:0,728,10584 0/0:345,4:349:99:0,897,15679 0/0:116,1:117:99:0,323,5390 0/1:14,5:19:99:165,0,615 0/0:604,5:609:99:0,1663,27659 0/0:37,1:38:69:0,69,1620 0/0:246,2:248:99:0,675,11201 0/0:317,1:318:99:0,957,14781 0/0:267,2:269:99:0,750,12313 0/0:177,1:178:99:0,506,8122 0/0:165,0:165:99:0,509,7570 0/0:358,0:358:99:0,1105,16467 0/0:271,0:271:99:0,837,12459 0/0:190,0:190:99:0,608,9080 0/0:202,0:202:99:0,626,9297 0/0:369,0:369:99:0,1162,17317 0/0:340,1:341:99:0,1015,15740 0/0:395,4:399:99:0,1065,18058 0/0:414,5:419:99:0,1057,18507 0/0:83,1:84:99:0,211,3735 0/0:80,1:81:99:0,208,3671 0/0:21,0:21:66:0,66,976 0/0:518,1:519:99:0,1598,24378 0/0:1091,1:1092:99:0,3381,50900 0/0:423,2:425:99:0,1241,19613 0/0:414,1:415:99:0,1276,19451 0/0:216,1:217:99:0,614,9766 0/0:222,2:224:99:0,603,10171 0/0:101,1:102:99:0,226,4526 0/0:112,0:112:99:0,358,5310 0/0:3,0:3:9:0,9,135 0/0:1286,2:1288:99:0,3899,59217
chr13 11325 . G C 187.48 . AC=1;AF=4.673e-03;AN=214;BaseQRankSum=-0.455;ClippingRankSum=-0.000;DP=29760;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0052;MLEAC=1;MLEAF=4.673e-03;MQ=43.43;MQRankSum=1.089;QD=0.88;ReadPosRankSum=0.036;SOR=0.794 GT:AD:DP:GQ:PL 0/0:129,0:129:99:0,390,5027 0/0:497,0:497:99:0,1510,19455 0/0:33,0:33:99:0,99,1230 0/0:385,0:385:99:0,1153,14465 0/0:327,0:327:99:0,986,12462 0/0:312,2:314:99:0,921,12112 0/0:55,0:55:99:0,165,2171 0/0:561,0:561:99:0,1698,21772 0/1:189,23:212:99:230,0,6790 0/0:198,7:205:99:0,380,7548 0/0:139,0:139:99:0,424,5543 0/0:171,6:177:99:0,367,6444 0/0:144,0:144:99:0,442,5773 0/0:195,0:195:99:0,584,7496 0/0:291,5:296:99:0,721,11200 0/0:326,3:329:99:0,907,12685 0/0:177,0:177:99:0,534,6839 0/0:137,0:137:99:0,410,5208 0/0:64,0:64:99:0,191,2433 0/0:1048,0:1048:99:0,3162,40008 0/0:20,0:20:60:0,60,795 0/0:106,0:106:99:0,321,4192 0/0:1676,0:1676:99:0,5087,66449 0/0:72,0:72:99:0,216,2544 0/0:111,0:111:99:0,333,4219 0/0:69,0:69:99:0,208,2714 0/0:40,0:40:99:0,120,1595 0/0:235,13:248:99:0,250,9378 0/0:172,0:172:99:0,518,7265 0/0:296,5:301:99:0,724,12126 0/0:1203,0:1203:99:0,3654,49241 0/0:67,0:67:99:0,202,2728 0/0:182,1:183:99:0,543,7428 0/0:210,0:210:99:0,637,7753 0/0:29,0:29:87:0,87,1170 0/0:32,0:32:99:0,101,1257 0/0:282,0:282:99:0,862,11640 0/0:111,0:111:99:0,337,4499 0/0:159,1:160:99:0,483,6601 0/0:38,0:38:99:0,117,1487 0/0:75,0:75:99:0,231,3050 0/0:230,0:230:99:0,695,8291 0/0:73,0:73:99:0,219,2972 0/0:94,0:94:99:0,291,4012 0/0:120,0:120:99:0,364,5054 0/0:131,0:131:99:0,402,5487 0/0:195,0:195:99:0,589,7307 0/0:114,0:114:99:0,345,4523 0/0:66,0:66:99:0,205,2826 0/0:80,0:80:99:0,244,3311 0/0:93,0:93:99:0,280,3636 0/0:145,0:145:99:0,448,5840 0/0:146,0:146:99:0,440,5679 0/0:144,0:144:99:0,438,5662 0/0:259,0:259:99:0,786,10056 0/0:213,0:213:99:0,645,8357 0/0:76,1:77:99:0,234,3081 0/0:1307,0:1307:99:0,3941,49389 0/0:282,0:282:99:0,850,9797 0/0:99,0:99:99:0,299,3797 0/0:122,2:124:99:0,287,4847 0/0:56,0:56:99:0,174,2310 0/0:44,0:44:99:0,132,1655 0/0:100,1:101:99:0,265,3972 0/0:84,0:84:99:0,255,3348 0/0:69,0:69:99:0,207,2808 0/0:139,2:141:99:0,354,5497 0/0:221,0:221:99:0,669,8758 0/0:185,2:187:99:0,542,7295 0/0:481,0:481:99:0,1453,20173 0/0:259,0:259:99:0,785,10115 0/0:365,1:366:99:0,1080,14759 0/0:1045,0:1045:99:0,3156,41829 0/0:1525,0:1525:99:0,4611,61834 0/0:887,0:887:99:0,2674,35392 0/0:228,0:228:99:0,704,9358 0/0:336,6:342:99:0,873,12861 0/0:113,2:115:99:0,268,4407 0/0:19,0:19:57:0,57,779 0/0:597,0:597:99:0,1799,23897 0/0:37,0:37:99:0,111,1481 0/0:232,11:243:99:0,312,8789 0/0:309,2:311:99:0,935,12733 0/0:252,7:259:99:0,495,9725 0/0:171,0:171:99:0,512,6268 0/0:164,0:164:99:0,491,5799 0/0:345,0:345:99:0,1051,12926 0/0:265,0:265:99:0,806,9997 0/0:187,0:187:99:0,569,6995 0/0:197,0:197:99:0,596,7803 0/0:360,0:360:99:0,1098,14704 0/0:334,0:334:99:0,1023,13262 0/0:387,1:388:99:0,1178,15608 0/0:413,0:413:99:0,1240,15814 0/0:83,0:83:99:0,250,3251 0/0:78,0:78:99:0,235,3189 0/0:21,0:21:63:0,63,783 0/0:508,0:508:99:0,1567,21341 0/0:1071,1:1072:99:0,3264,43628 0/0:407,4:411:99:0,1108,15682 0/0:401,0:401:99:0,1210,15713 0/0:210,0:210:99:0,635,7567 0/0:221,0:221:99:0,665,7959 0/0:99,0:99:99:0,303,4063 0/0:110,0:110:99:0,333,4489 0/0:3,0:3:9:0,9,125 0/0:1258,1:1259:99:0,3770,51022
chr13 11327 . A AAT 238.98 . AC=4;AF=0.019;AN=214;BaseQRankSum=7.130;ClippingRankSum=-0.001;DP=29952;ExcessHet=3.1341;FS=0.000;InbreedingCoeff=-0.0212;MLEAC=3;MLEAF=0.014;MQ=43.42;MQRankSum=-20.057;QD=2.13;ReadPosRankSum=2.475;SOR=0.723 GT:AD:DP:GQ:PL 0/0:133,1:134:99:0,361,5939 0/0:502,1:503:99:0,1515,23055 0/1:28,5:33:99:123,0,1168 0/0:387,0:387:99:0,1178,17537 0/0:326,2:328:99:0,907,14653 0/0:315,1:316:99:0,943,14552 0/0:55,0:55:99:0,168,2485 0/0:560,2:562:99:0,1644,25619 0/0:210,1:211:99:0,611,9636 0/0:202,2:204:99:0,536,9161 0/0:146,1:147:99:0,398,6474 0/0:178,1:179:99:0,515,8226 0/0:146,2:148:99:0,368,6643 0/0:190,1:191:99:0,558,8858 0/0:297,2:299:99:0,822,13341 0/0:337,0:337:99:0,1038,15360 0/0:177,3:180:99:0,415,7865 0/0:139,0:139:99:0,431,6402 0/0:64,1:65:99:0,151,2802 0/0:1034,4:1038:99:0,3047,47670 0/1:17,2:19:30:30,0,750 0/0:105,3:108:99:0,205,4795 0/0:1658,3:1661:99:0,5014,76282 0/0:78,0:78:99:0,238,3509 0/0:106,2:108:99:0,245,4816 0/0:72,3:75:94:0,94,3125 0/1:38,3:41:12:12,0,1576 0/0:249,1:250:99:0,720,11274 0/0:174,1:175:99:0,488,7843 0/0:303,0:303:99:0,948,14068 0/0:1210,1:1211:99:0,3691,55410 0/0:68,1:69:99:0,163,3007 0/0:182,2:184:99:0,487,8366 0/0:216,0:216:99:0,663,9832 0/0:28,2:30:3:0,3,1199 0/0:31,2:33:12:0,12,1314 0/0:281,0:281:99:0,867,12949 0/0:110,2:112:99:0,253,4942 0/0:161,0:161:99:0,500,7383 0/0:37,2:39:33:0,33,1613 0/0:75,1:76:99:0,184,3330 0/0:227,0:227:99:0,720,10738 0/0:70,1:71:99:0,178,3224 0/0:96,0:96:99:0,295,4394 0/0:119,0:119:99:0,371,5511 0/0:133,1:134:99:0,374,6107 0/0:193,0:193:99:0,596,8899 0/0:116,2:118:99:0,268,5131 0/0:67,1:68:99:0,165,3001 0/0:80,0:80:99:0,247,3688 0/0:93,0:93:99:0,289,4285 0/0:149,1:150:99:0,416,6766 0/0:147,0:147:99:0,452,6704 0/0:146,0:146:99:0,445,6583 0/0:269,0:269:99:0,827,12264 0/0:215,1:216:99:0,617,9783 0/0:80,0:80:99:0,243,3559 0/0:1308,3:1311:99:0,3888,59593 0/0:281,0:281:99:0,864,12877 0/0:100,0:100:99:0,307,4581 0/0:126,0:126:99:0,383,5687 0/0:57,0:57:99:0,172,2565 0/0:42,0:42:99:0,132,1972 0/0:102,0:102:99:0,310,4610 0/0:83,0:83:99:0,259,3852 0/0:70,2:72:99:0,129,3027 0/0:140,0:140:99:0,431,6393 0/0:221,1:222:99:0,632,9992 0/0:191,0:191:99:0,581,8625 0/0:478,1:479:99:0,1433,21905 0/0:262,2:264:99:0,714,11736 0/0:375,1:376:99:0,1099,16922 0/0:1055,1:1056:99:0,3165,47676 0/0:1538,8:1546:99:0,4357,69409 0/0:892,4:896:99:0,2563,40392 0/0:233,0:233:99:0,722,10703 0/0:342,4:346:99:0,870,15284 0/0:114,1:115:99:0,305,5120 0/1:14,5:19:99:168,0,573 0/0:596,5:601:99:0,1634,27209 0/0:37,1:38:70:0,70,1620 0/0:238,2:240:99:0,648,10797 0/0:314,1:315:99:0,936,14432 0/0:256,2:258:99:0,720,11863 0/0:172,1:173:99:0,494,7940 0/0:166,0:166:99:0,500,7435 0/0:352,0:352:99:0,1075,16026 0/0:269,0:269:99:0,822,12235 0/0:187,0:187:99:0,581,8657 0/0:194,0:194:99:0,606,9020 0/0:358,0:358:99:0,1123,16717 0/0:333,1:334:99:0,979,15200 0/0:394,4:398:99:0,1045,17769 0/0:412,5:417:99:0,1046,18325 0/0:83,1:84:99:0,208,3690 0/0:82,1:83:99:0,209,3673 0/0:22,0:22:66:0,66,976 0/0:511,1:512:99:0,1544,23550 0/0:1073,1:1074:99:0,3276,49313 0/0:422,2:424:99:0,1208,19083 0/0:411,1:412:99:0,1231,18776 0/0:209,1:210:99:0,599,9541 0/0:215,2:217:99:0,585,9901 0/0:101,1:102:99:0,268,4566 0/0:114,0:114:99:0,347,5130 0/0:3,0:3:9:0,9,135 0/0:1257,2:1259:99:0,3777,57388
chr13 11347 . T C 54.49 . AC=1;AF=4.673e-03;AN=214;BaseQRankSum=-1.419;ClippingRankSum=-0.001;DP=30725;ExcessHet=3.0103;FS=3.776;InbreedingCoeff=-0.0054;MLEAC=1;MLEAF=4.673e-03;MQ=43.41;MQRankSum=-0.087;QD=0.51;ReadPosRankSum=-1.118;SOR=1.060 GT:AD:DP:GQ:PL 0/0:129,0:129:99:0,394,5253 0/0:552,1:553:99:0,1667,21025 0/0:35,1:36:99:0,100,1303 0/0:399,1:400:99:0,1183,14004 0/0:306,2:308:99:0,899,10953 0/0:341,1:342:99:0,1007,12707 0/0:58,0:58:99:0,173,2121 0/0:548,2:550:99:0,1629,19844 0/0:236,0:236:99:0,713,9044 0/0:230,0:230:99:0,686,8778 0/0:158,1:159:99:0,466,6037 0/0:196,0:196:99:0,591,7264 0/0:145,10:155:99:0,124,4977 0/0:191,0:191:99:0,573,6929 0/0:337,1:338:99:0,994,12941 0/0:332,0:332:99:0,1001,12675 0/0:199,0:199:99:0,598,7471 0/0:149,0:149:99:0,450,5473 0/0:78,0:78:99:0,233,2780 0/0:992,7:999:99:0,2926,36466 0/0:21,0:21:66:0,66,872 0/0:121,0:121:99:0,372,5067 0/0:1556,20:1576:99:0,4126,57380 0/0:83,0:83:99:0,249,2907 0/0:128,0:128:99:0,393,5074 0/0:79,0:79:99:0,237,3176 0/0:42,0:42:99:0,126,1650 0/0:285,1:286:99:0,851,11547 0/0:187,0:187:99:0,571,7703 0/0:312,0:312:99:0,934,12166 0/0:1231,2:1233:99:0,3707,48317 0/0:78,0:78:99:0,236,3063 0/0:196,1:197:99:0,584,7849 0/0:220,1:221:99:0,652,7898 0/0:31,0:31:93:0,93,1209 0/0:40,0:40:99:0,119,1476 0/0:250,19:269:99:0,236,9050 0/0:111,0:111:99:0,339,4632 0/0:160,7:167:99:0,236,5802 0/0:38,0:38:99:0,119,1348 0/0:83,0:83:99:0,249,3116 0/0:216,0:216:99:0,653,7761 0/0:70,0:70:99:0,211,2734 0/1:94,12:106:97:97,0,3395 0/0:130,0:130:99:0,392,5330 0/0:150,1:151:99:0,443,6006 0/0:198,0:198:99:0,606,7243 0/0:120,0:120:99:0,357,4364 0/0:69,6:75:14:0,14,2599 0/0:89,8:97:59:0,59,3207 0/0:105,0:105:99:0,314,3918 0/0:148,5:153:99:0,263,5309 0/0:171,3:174:99:0,497,6412 0/0:147,6:153:99:0,270,5189 0/0:263,1:264:99:0,749,9551 0/0:216,1:217:99:0,648,8185 0/0:85,1:86:99:0,253,3248 0/0:1280,1:1281:99:0,3833,47027 0/0:283,0:283:99:0,859,9784 0/0:114,0:114:99:0,341,4352 0/0:128,2:130:99:0,367,4980 0/0:66,0:66:99:0,200,2531 0/0:47,0:47:99:0,140,1794 0/0:106,1:107:99:0,302,4214 0/0:79,0:79:99:0,239,3029 0/0:79,2:81:99:0,224,2936 0/0:153,0:153:99:0,458,5674 0/0:225,0:225:99:0,681,8728 0/0:193,3:196:99:0,563,7523 0/0:496,2:498:99:0,1464,19623 0/0:269,0:269:99:0,806,10000 0/0:367,0:367:99:0,1111,14270 0/0:1054,2:1056:99:0,3168,40034 0/0:1560,4:1564:99:0,4652,59668 0/0:924,1:925:99:0,2771,35303 0/0:267,4:271:99:0,769,10085 0/0:313,2:315:99:0,926,11774 0/0:107,1:108:99:0,284,4087 0/0:19,0:19:60:0,60,803 0/0:615,1:616:99:0,1861,24011 0/0:41,0:41:99:0,126,1641 0/0:236,0:236:99:0,709,8781 0/0:298,24:322:99:0,164,11031 0/0:273,2:275:99:0,813,10453 0/0:173,6:179:99:0,389,5887 0/0:149,0:149:99:0,450,5169 0/0:338,0:338:99:0,1016,12092 0/0:273,0:273:99:0,822,9613 0/0:174,0:174:99:0,528,6753 0/0:190,11:201:99:0,202,6650 0/0:342,7:349:99:0,905,13138 0/0:336,1:337:99:0,1001,12543 0/0:471,0:471:99:0,1434,18204 0/0:482,5:487:99:0,1389,17085 0/0:96,1:97:99:0,283,3667 0/0:100,0:100:99:0,300,4135 0/0:24,0:24:71:0,71,848 0/0:472,32:504:99:0,562,17629 0/0:1004,70:1074:99:0,946,36419 0/0:420,1:421:99:0,1257,15400 0/0:397,1:398:99:0,1165,14546 0/0:207,0:207:99:0,620,7480 0/0:213,0:213:99:0,646,7578 0/0:133,0:133:99:0,402,5432 0/0:139,1:140:99:0,414,5633 0/0:3,0:3:9:0,9,101 0/0:1246,6:1252:99:0,3681,47554
chr13 11373 . A G 29032.58 . AC=16;AF=0.075;AN=214;BaseQRankSum=1.988;ClippingRankSum=-0.001;DP=31075;ExcessHet=5.9743;FS=1.477;InbreedingCoeff=-0.0842;MLEAC=16;MLEAF=0.075;MQ=43.47;MQRankSum=-4.666;QD=9.99;ReadPosRankSum=1.606;SOR=1.188 GT:AD:DP:GQ:PL 0/0:133,0:133:99:0,401,5226 0/0:602,1:603:99:0,1797,23076 0/0:36,0:36:99:0,107,1347 0/0:396,0:396:99:0,1182,14522 0/0:312,0:312:99:0,933,11426 0/0:366,0:366:99:0,1101,13895 0/1:52,7:59:29:29,0,1649 0/0:550,0:550:99:0,1647,19924 0/0:239,0:239:99:0,722,9013 0/0:228,0:228:99:0,688,9002 0/0:179,1:180:99:0,504,6954 0/0:219,0:219:99:0,656,7910 0/0:165,0:165:99:0,499,6337 0/0:217,0:217:99:0,654,8230 0/0:331,0:331:99:0,995,12421 0/0:335,0:335:99:0,1008,12878 0/0:218,0:218:99:0,657,8553 0/0:173,0:173:99:0,519,6495 0/0:77,0:77:99:0,234,2720 0/0:1115,1:1116:99:0,3284,39555 0/0:18,0:18:57:0,57,778 0/1:24,104:128:99:3506,0,600 0/0:1398,5:1403:99:0,4056,50463 0/0:86,0:86:99:0,257,3067 0/0:148,0:148:99:0,444,5856 0/0:85,0:85:99:0,255,3371 0/0:43,0:43:99:0,129,1635 0/0:271,0:271:99:0,814,11278 0/1:120,70:190:99:1816,0,4149 0/0:319,0:319:99:0,959,13001 0/0:1193,3:1196:99:0,3534,43891 0/0:85,0:85:99:0,254,3313 0/1:164,63:227:99:1680,0,5829 0/0:216,0:216:99:0,645,7623 0/0:35,0:35:99:0,107,1299 0/0:41,0:41:99:0,122,1506 0/0:253,1:254:99:0,761,9588 0/1:98,39:137:99:1132,0,3501 0/0:153,1:154:99:0,458,5846 0/1:23,14:37:99:295,0,692 0/1:53,24:77:99:577,0,1658 0/0:223,0:223:99:0,666,7907 0/0:74,0:74:99:0,228,3075 0/0:112,0:112:99:0,340,4755 0/1:50,71:121:99:2375,0,1624 0/1:105,48:153:99:1214,0,3800 0/0:217,0:217:99:0,659,7673 0/0:122,0:122:99:0,367,4625 0/0:76,0:76:99:0,237,3290 0/0:104,1:105:99:0,283,4255 ./. 0/0:172,0:172:99:0,515,5949 0/0:196,0:196:99:0,596,7630 0/0:160,0:160:99:0,486,6358 0/0:269,1:270:99:0,773,9940 0/0:212,0:212:99:0,633,7664 0/0:94,0:94:99:0,287,3772 0/0:1217,1:1218:99:0,3635,43111 0/0:280,0:280:99:0,837,9441 0/1:117,16:133:99:200,0,4318 0/0:156,0:156:99:0,474,6235 0/0:76,0:76:99:0,234,3033 0/0:44,0:44:99:0,138,1864 0/0:106,0:106:99:0,321,4268 0/0:84,0:84:99:0,252,3243 0/1:60,25:85:99:628,0,2121 0/0:162,0:162:99:0,490,6680 0/0:234,0:234:99:0,703,8955 0/0:197,0:197:99:0,586,7581 0/0:516,0:516:99:0,1549,21066 0/0:238,20:258:86:0,86,8158 0/0:354,0:354:99:0,1070,13440 0/0:990,0:990:99:0,2973,36592 0/0:1520,1:1521:99:0,4557,56342 0/0:933,0:933:99:0,2785,34091 0/1:169,108:277:99:3126,0,5325 0/0:312,0:312:99:0,935,11514 0/0:109,0:109:99:0,327,3803 0/0:23,0:23:69:0,69,891 0/0:593,0:593:99:0,1785,22008 0/0:57,0:57:99:0,171,2123 0/0:242,0:242:99:0,726,9018 0/0:340,0:340:99:0,1019,13192 0/0:301,0:301:99:0,907,11479 0/0:202,5:207:99:0,482,6833 0/0:161,0:161:99:0,481,5711 0/0:357,0:357:99:0,1074,12142 0/0:282,0:282:99:0,840,9435 0/1:80,95:175:99:2538,0,2197 0/0:190,6:196:99:0,447,6770 0/0:337,0:337:99:0,1019,13118 0/0:365,0:365:99:0,1098,13599 0/1:325,165:490:99:4735,0,11006 0/0:474,2:476:99:0,1391,18015 0/0:118,5:123:99:0,154,4315 0/1:83,46:129:99:1398,0,2960 0/0:19,0:19:56:0,56,642 0/1:322,166:488:99:3994,0,10888 0/0:1029,24:1053:99:0,2619,39705 0/0:386,0:386:99:0,1156,14115 0/0:371,25:396:99:0,364,12924 0/0:201,15:216:99:0,145,6576 0/0:223,0:223:99:0,666,7843 0/0:165,0:165:99:0,502,6895 0/0:165,0:165:99:0,499,6696 0/0:3,0:3:9:0,9,135 0/0:1280,2:1282:99:0,3830,47031
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