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#ifndef TRANSCRIPTEXPRESSION_H
#define TRANSCRIPTEXPRESSION_H
#include<vector>
#include<string>
#include<stdint.h>
using namespace std;
enum TE_FileType{ SAMPLER_MEANS, MEAN_VARIANCE , M_ALPHAS, GUESS };
struct trExpInfoT{
double exp,var;
int_least32_t id;
bool operator< (const trExpInfoT& d2) const{
return exp<d2.exp;
}
};
class TranscriptExpression{
private:
long M;
bool logged;
vector<trExpInfoT> trs;
TE_FileType guessFileType(const string &fileName);
public:
TranscriptExpression();
TranscriptExpression(const string &fileName, TE_FileType fileType = SAMPLER_MEANS);
bool readExpression(const string &fileName, TE_FileType fileType = SAMPLER_MEANS);
void doSort(bool reverse = false);
long getM(){return M;}
bool isLogged(){return logged;}
double exp(long tr){return trs[tr].exp;}
double var(long tr){return trs[tr].var;}
long id(long tr){return trs[tr].id;}
};
#endif
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