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Debian Tests Data
=================
The autopkgtest for bitseq was updated to use pregenerated test
data instead of dynamically running bowtie.
This is necessary because bowtie is not available on 32-bit
architectures (such as i386, armel, armhf). With this change,
the test is skipped on those architectures and runs normally
elsewhere.
The dataset is shipped via the 'debian-tests-data' component
tarball. It contains Bowtie index files and a SAM alignment file
required to test bitseq.
To regenerate the dataset manually on a 64-bit machine:
bowtie-build -f Ref.fasta index
bowtie -q -v 3 --all -m 100 --sam index Reads.fastq -S out.sam
Make sure bowtie is installed and available in your PATH.
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