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#ifndef TAGALIGNMENT_H
#define TAGALIGNMENT_H
class TagAlignment{
protected:
long trId;
// bool strand; // true = forward; false = reverse
long double prob;
public:
TagAlignment(long t=0,long double p = 0){
trId=t;
// strand=s;
prob=p;
}
long getTrId()const {return trId;}
double getProb()const {return prob;}
void setProb(double p){prob=p;}
};
class TagAlignment2: public TagAlignment {
private:
long double lowProb;
public:
//TagAlignment(long t=0,bool s=true,long double p = 0,long double lp = 0){
TagAlignment2(long t=0,long double p = 0,long double lp = 0){
trId=t;
// strand=s;
prob=p;
lowProb = lp;
}
double getLowProb()const {return lowProb;}
};
#endif
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