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Source: bitseq
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tim Booth <tbooth@ceh.ac.uk>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
zlib1g-dev,
libbam-dev,
libboost-dev,
help2man,
python3,
python3-numpy
Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/med-team/bitseq
Vcs-Git: https://salsa.debian.org/med-team/bitseq.git
Homepage: https://github.com/BitSeq/BitSeq
Package: bitseq
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
python3,
python3-numpy
Suggests: samtools
Description: Bayesian Inference of Transcripts from Sequencing Data
BitSeq is an application for inferring expression levels of individual
transcripts from sequencing (RNA-Seq) data and estimating differential
expression (DE) between conditions. An advantage of this approach is the
ability to account for both technical uncertainty and intrinsic biological
variance in order to avoid false DE calls. The technical contribution to the
uncertainty comes both from finite read-depth and the possibly ambiguous
mapping of reads to multiple transcripts.
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