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Description: Fix passage of boost header paths to cmake
Author: Afif Elghraoui <afif@debian.org>
Forwarded: no
--- blasr.orig/utils/bax2bam/makefile
+++ blasr/utils/bax2bam/makefile
@@ -10,7 +10,7 @@
all: ${CURDIR}/src/* ${CURDIR}/tests/src/*
@mkdir -p ${CURDIR}/build && \
cd ${CURDIR}/build && \
- cmake -DBOOST_ROOT=${BOOST_ROOT} \
+ cmake -DBoost_INCLUDE_DIRS=${BOOST_INC} \
-DPacBioBAM_INCLUDE_DIRS=${PBBAM_INC} \
-DHTSLIB_INCLUDE_DIRS=${HTSLIB_INC} \
-DPacBioBAM_LIBRARIES=${PBBAM_LIB}/libpbbam${SH_LIB_EXT} \
--- blasr.orig/utils/bam2bax/makefile
+++ blasr/utils/bam2bax/makefile
@@ -10,7 +10,7 @@
all: ${CURDIR}/src/*.cpp ${CURDIR}/src/*.h ${CURDIR}/tests/src/*.cpp ${CURDIR}/tests/src/*.h
@mkdir -p ${CURDIR}/build && \
cd ${CURDIR}/build && \
- cmake -DBOOST_ROOT=${BOOST_ROOT} \
+ cmake -DBoost_INCLUDE_DIRS=${BOOST_INC} \
-DPacBioBAM_INCLUDE_DIRS=${PBBAM_INC} \
-DHTSLIB_INCLUDE_DIRS=${HTSLIB_INC} \
-DPacBioBAM_LIBRARIES=${PBBAM_LIB}/libpbbam${SH_LIB_EXT} \
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