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|
INCDIRS := \
${LIBBLASR_INC} \
${LIBPBIHDF_INC} \
${LIBPBDATA_INC}
SYSINCDIRS := \
${PBBAM_INC} \
${HDF5_INC} \
${HTSLIB_INC} \
${BOOST_INC}
LIBDIRS := \
${LIBBLASR_LIB} \
${LIBPBIHDF_LIB} \
${LIBPBDATA_LIB} \
${PBBAM_LIB} \
${HDF5_LIB} \
${HTSLIB_LIB} \
${GCC_LIB} \
${SZLIB_LIB} \
${ZLIB_LIB}
LDLIBS+= \
${LIBPBIHDF_LIBFLAGS} \
${LIBBLASR_LIBFLAGS} \
${LIBPBIHDF_LIBFLAGS} \
${LIBPBDATA_LIBFLAGS} \
${PBBAM_LIBFLAGS} \
${HDF5_LIBFLAGS} \
${HTSLIB_LIBFLAGS} \
${SZLIB_LIBFLAGS} \
${ZLIB_LIBFLAGS} \
${RT_LIBFLAGS} \
${PTHREAD_LIBFLAGS} \
${DL_LIBFLAGS}
# We repeat LIBPBIHDF_LIBFLAGS because of a circular dependency. See #77.
CPPFLAGS+=$(patsubst %,-I%,${INCDIRS})
CPPFLAGS+=$(patsubst %,-I%,${SYSINCDIRS})
LDFLAGS+=$(patsubst %,-L%,${LIBDIRS})
|
