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#!/usr/bin/make -f
include /usr/share/dpkg/default.mk
export VERBOSE=1 # for cmake
export SH_LIB_EXT=.so
export HDF5_INC=/usr/include/hdf5/serial
export HDF5_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial
export BOOST_INC=/usr/include/boost
export HTSLIB_INC=/usr/include/htslib
export HTSLIB_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)
export PBBAM_INC=/usr/include
export PBBAM_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)
export PBDATA_ROOT_DIR=/usr/include/pbseq
export LIBBLASR_INC=$(PBDATA_ROOT_DIR)/alignment
export LIBBLASR_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)
export LIBPBDATA_INC=$(PBDATA_ROOT_DIR)/pbdata
export LIBPBDATA_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)
export LIBPBIHDF_INC=$(PBDATA_ROOT_DIR)/hdf
export LIBPBIHDF_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)
# CPPFLAGS apparently aren't exported for bam2bax/bax2bam
export DEB_CXXFLAGS_MAINT_PREPEND = $(CPPFLAGS) -I$(PBDATA_ROOT_DIR)
%:
dh $@ --parallel
override_dh_auto_configure:
./configure.py --shared
override_dh_auto_build: main bax2bam bam2bax;
.PHONY: main
main:
dh_auto_build
.PHONY: bax2bam
bax2bam: utils/bax2bax/bin/bax2bam
utils/bax2bax/bin/bax2bam:
$(MAKE) -C utils/bax2bam
.PHONY: bam2bax
bam2bax: utils/bam2bax/bin/bam2bax
utils/bam2bax/bin/bam2bax:
$(MAKE) -C utils/bam2bax
# Tests require data not available in the source distribution
override_dh_auto_test: ;
override_dh_auto_clean: override_dh_auto_configure
$(MAKE) clean
$(MAKE) -C utils/bam2bax clean
$(MAKE) -C utils/bax2bam clean
# This is created by configure.py
$(RM) defines.mk
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