File: holeNumbers.t

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blasr 5.3.5%2Bdfsg-6
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Set up
  $ mkdir -p $OUTDIR

Test --holeNumbers
  $ rm -f $OUTDIR/holeNumbers.m4
  $ $BLASR_EXE $DATDIR/lambda_bax.fofn $DATDIR/lambda_ref.fasta -m 4 --out $OUTDIR/holeNumbers.m4 --holeNumbers 14798,55000--55100 --nproc 8
  [INFO]* (glob)
  [INFO]* (glob)
  $ sort $OUTDIR/holeNumbers.m4 > $TMP1
  $ sort $STDDIR/holeNumbers_2014_05_29.m4 > $TMP2
  $ diff $TMP1 $TMP2
  $ rm $TMP1 $TMP2