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|
project(
'blasr',
'cpp',
version : '5.3.5',
default_options : [
'buildtype=release',
'warning_level=3',
'cpp_std=c++17',
'b_ndebug=false'],
license : 'BSD-3',
meson_version : '>= 0.52.0')
# TODO:
# try to reenable 'b_ndebug=true'
# this will require replacing a number of asserts
# with proper throw statements
############
# CXXFLAGS #
############
blasr_warning_flags = []
cpp = meson.get_compiler('cpp')
foreach cflag: [
'-Wno-delete-non-virtual-dtor',
'-Wno-non-virtual-dtor',
'-Wno-unused-but-set-variable',
'-Wno-unused-variable']
if cpp.has_argument(cflag)
blasr_warning_flags += cflag
endif
endforeach
if cpp.get_id() == 'clang'
foreach cflag: [
'-Wno-overloaded-virtual']
if cpp.has_argument(cflag)
blasr_warning_flags += cflag
endif
endforeach
endif
################
# dependencies #
################
# threads
blasr_thread_dep = dependency('threads', required : true)
# boost
blasr_boost_dep = dependency('boost', include_type : 'system', required : true)
# pbbam
blasr_pbbam_dep = cpp.find_library('pbbam')
# libblasr
blasr_libblasr_dep = dependency('libblasr', required : true)
# zlib
blasr_zlib_dep = dependency('zlib', required : true, fallback : ['zlib', 'zlib_dep'])
# htslib
blasr_htslib_dep = dependency('htslib', required : true, version : '>=1.4', fallback : ['htslib', 'htslib_dep'])
# missing libs for linker
blasr_pbcopper_deps = cpp.find_library('pbcopper')
blasr_deps = [
blasr_thread_dep,
blasr_boost_dep,
blasr_pbbam_dep,
blasr_libblasr_dep,
blasr_pbcopper_deps,
blasr_zlib_dep,
blasr_htslib_dep]
########################
# sources + executable #
########################
# replace version strings
blasr_ver_arr = meson.project_version().split('.')
blasr_major_version = blasr_ver_arr[0]
blasr_minor_version = blasr_ver_arr[1]
blasr_patch_version = blasr_ver_arr[2]
blasr_config = configuration_data()
blasr_config.set('BLASR_VERSION', meson.project_version())
blasr_config.set('BLASR_VERSION_MAJOR', blasr_major_version)
blasr_config.set('BLASR_VERSION_MINOR', blasr_minor_version)
blasr_config.set('BLASR_VERSION_PATCH', blasr_patch_version)
blasr_BlasrVersion_h = configure_file(
input : 'BlasrVersion.h.in',
output : 'BlasrVersion.h',
configuration : blasr_config)
# replace git commit id
blasr_BlasrGitHash_h = vcs_tag(
input : 'BlasrGitHash.h.in',
output : 'BlasrGitHash.h',
command : ['git', 'describe', '--always', '--dirty=*'],
fallback : '',
replace_string : '@BLASR_GIT_SHA1@')
blasr_sources = []
blasr_include_directories = [include_directories('.')]
subdir('extrautils')
subdir('utils')
blasr_static_impl = static_library(
'blasr_impl',
blasr_sources,
install : false,
dependencies : blasr_deps,
cpp_args : [blasr_warning_flags])
blasr_main = executable(
'blasr', [
blasr_BlasrGitHash_h,
blasr_BlasrVersion_h,
files('Blasr.cpp')],
install : true,
dependencies : blasr_deps,
link_with : blasr_static_impl,
cpp_args : [blasr_warning_flags, '-DCMAKE_BUILD=1'])
blasr_utils_sawriter = executable(
'sawriter', files([
'utils/SAWriter.cpp']),
install : true,
dependencies : blasr_deps,
link_with : blasr_static_impl,
cpp_args : [blasr_warning_flags, '-DCMAKE_BUILD=1'])
blasr_utils_toAfg = executable(
'toAfg', files([
'utils/ToAfg.cpp']),
install : false,
dependencies : blasr_deps,
link_with : blasr_static_impl,
cpp_args : [blasr_warning_flags, '-DCMAKE_BUILD=1'])
#########
# tests #
#########
if get_option('tests')
blasr_clang_formatter = find_program('tools/check-formatting')
test(
'blasr formatting check',
blasr_clang_formatter,
args : [
'--all'],
workdir : meson.source_root())
subdir('ctest')
endif
|
